RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 FAM69CQ0P6D2 419 aa14.3□□□□□ -0.12
VIM-202ENST00000421459 RUSC2Q8N2Y8 1516 aa14.3□□□□□ -0.12
VIM-202ENST00000421459 TTBK1Q5TCY1 1321 aaPredicted RBP14.28□□□□□ -0.12
VIM-202ENST00000421459 NPM1P06748 294 aaKnown RBP eCLIP14.27□□□□□ -0.13
VIM-202ENST00000421459 KIF13AQ9H1H9 1805 aa14.25□□□□□ -0.13
VIM-202ENST00000421459 KIAA0586Q9BVV6 1533 aa14.24□□□□□ -0.13
VIM-202ENST00000421459 KIF27Q86VH2 1401 aa14.24□□□□□ -0.13
VIM-202ENST00000421459 ABCC10Q5T3U5 1492 aa14.23□□□□□ -0.13
VIM-202ENST00000421459 ADCY10Q96PN6 1610 aa14.23□□□□□ -0.13
VIM-202ENST00000421459 CARMIL1Q5VZK9 1371 aa14.2□□□□□ -0.14
VIM-202ENST00000421459 MAPKBP1O60336 1514 aa14.18□□□□□ -0.14
VIM-202ENST00000421459 PTPRGP23470 1445 aa14.17□□□□□ -0.14
VIM-202ENST00000421459 DIP2BQ9P265 1576 aa14.17□□□□□ -0.14
VIM-202ENST00000421459 CUL7Q14999 1698 aa14.15□□□□□ -0.14
VIM-202ENST00000421459 TNIKQ9UKE5 1360 aa14.11□□□□□ -0.15
VIM-202ENST00000421459 KDM4FA0A1W2PPD8 638 aa14.11□□□□□ -0.15
VIM-202ENST00000421459 CARMIL2Q6F5E8 1435 aa14.08□□□□□ -0.15
VIM-202ENST00000421459 TSPOAP1O95153 1857 aa14.08□□□□□ -0.16
VIM-202ENST00000421459 ABCC2Q92887 1545 aa14.07□□□□□ -0.16
VIM-202ENST00000421459 KDM6BO15054 1643 aa14.07□□□□□ -0.16
VIM-202ENST00000421459 ASXL2Q76L83 1435 aa14.07□□□□□ -0.16
VIM-202ENST00000421459 DISP1Q96F81 1524 aa14.06□□□□□ -0.16
VIM-202ENST00000421459 IQGAP2Q13576 1575 aa14.06□□□□□ -0.16
VIM-202ENST00000421459 UACAQ9BZF9 1416 aa14.04□□□□□ -0.16
VIM-202ENST00000421459 RAPGEF2Q9Y4G8 1499 aa14.02□□□□□ -0.16
VIM-202ENST00000421459 UHRF1BP1LA0JNW5 1464 aa14□□□□□ -0.17
VIM-202ENST00000421459 PLB1Q6P1J6 1458 aa14□□□□□ -0.17
VIM-202ENST00000421459 COL17A1Q9UMD9 1497 aaPredicted RBP13.99□□□□□ -0.17
VIM-202ENST00000421459 UGGT2Q9NYU1 1516 aa13.98□□□□□ -0.17
VIM-202ENST00000421459 EPRSP07814 1512 aaKnown RBP13.97□□□□□ -0.17
VIM-202ENST00000421459 PPRC1Q5VV67 1664 aaKnown RBP13.97□□□□□ -0.17
VIM-202ENST00000421459 GLI2P10070 1586 aa13.96□□□□□ -0.17
VIM-202ENST00000421459 KDM5BQ9UGL1 1544 aa13.96□□□□□ -0.17
VIM-202ENST00000421459 KIAA0556O60303 1618 aa13.94□□□□□ -0.18
VIM-202ENST00000421459 ZCCHC11Q5TAX3 1644 aaKnown RBP13.93□□□□□ -0.18
VIM-202ENST00000421459 KCNH8Q96L42 1107 aa13.92□□□□□ -0.18
VIM-202ENST00000421459 ARID3CA6NKF2 412 aa13.91□□□□□ -0.18
VIM-202ENST00000421459 P3H3Q8IVL6 736 aa13.9□□□□□ -0.18
VIM-202ENST00000421459 ADGRL1O94910 1474 aa13.89□□□□□ -0.19
VIM-202ENST00000421459 MAP3K4Q9Y6R4 1608 aa13.89□□□□□ -0.19
VIM-202ENST00000421459 WDR7Q9Y4E6 1490 aa13.87□□□□□ -0.19
VIM-202ENST00000421459 PRXQ9BXM0 1461 aa13.86□□□□□ -0.19
VIM-202ENST00000421459 TEX14Q8IWB6 1497 aa13.85□□□□□ -0.19
VIM-202ENST00000421459 CD109Q6YHK3 1445 aa13.84□□□□□ -0.19
VIM-202ENST00000421459 ABCA8O94911 1581 aa13.83□□□□□ -0.19
VIM-202ENST00000421459 CTTNBP2Q8WZ74 1663 aa13.82□□□□□ -0.2
VIM-202ENST00000421459 GOLGA3Q08378 1498 aa13.82□□□□□ -0.2
VIM-202ENST00000421459 RANGAP1P46060 587 aaPredicted RBP13.8□□□□□ -0.2
VIM-202ENST00000421459 ILDR1Q86SU0 546 aaPredicted RBP13.8□□□□□ -0.2
VIM-202ENST00000421459 MAGI3Q5TCQ9 1506 aa13.78□□□□□ -0.2
VIM-202ENST00000421459 ATP10BO94823 1461 aa13.77□□□□□ -0.21
VIM-202ENST00000421459 CSRNP3Q8WYN3 585 aa13.77□□□□□ -0.21
VIM-202ENST00000421459 FAM9AQ8IZU1 332 aaPredicted RBP13.74□□□□□ -0.21
VIM-202ENST00000421459 CFAP43Q8NDM7 1665 aa13.73□□□□□ -0.21
VIM-202ENST00000421459 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.73□□□□□ -0.21
VIM-202ENST00000421459 HNRNPUL2Q1KMD3 747 aaKnown RBP13.73□□□□□ -0.21
VIM-202ENST00000421459 HECW2Q9P2P5 1572 aa13.72□□□□□ -0.21
VIM-202ENST00000421459 RAPGEF3O95398 923 aa13.72□□□□□ -0.21
VIM-202ENST00000421459 EHMT2Q96KQ7 1210 aa13.68□□□□□ -0.22
VIM-202ENST00000421459 ARAP3Q8WWN8 1544 aa13.68□□□□□ -0.22
VIM-202ENST00000421459 KIF21BO75037 1637 aa13.68□□□□□ -0.22
VIM-202ENST00000421459 SAMD9Q5K651 1589 aa13.67□□□□□ -0.22
VIM-202ENST00000421459 FHOD3Q2V2M9 1422 aa13.67□□□□□ -0.22
VIM-202ENST00000421459 RAPGEF6Q8TEU7 1601 aa13.65□□□□□ -0.22
VIM-202ENST00000421459 NUP153P49790 1475 aaKnown RBP13.65□□□□□ -0.22
VIM-202ENST00000421459 ABCA9Q8IUA7 1624 aa13.64□□□□□ -0.23
VIM-202ENST00000421459 ARID4BQ4LE39 1312 aaPredicted RBP13.61□□□□□ -0.23
VIM-202ENST00000421459 PLEKHD1A6NEE1 506 aa13.6□□□□□ -0.23
VIM-202ENST00000421459 PHLDB1Q86UU1 1377 aa13.59□□□□□ -0.23
VIM-202ENST00000421459 NEO1Q92859 1461 aa13.59□□□□□ -0.23
VIM-202ENST00000421459 FRMPD1Q5SYB0 1578 aa13.58□□□□□ -0.23
VIM-202ENST00000421459 PTPRMP28827 1452 aa13.58□□□□□ -0.24
VIM-202ENST00000421459 PLPPR3Q6T4P5 718 aa13.57□□□□□ -0.24
VIM-202ENST00000421459 EEA1Q15075 1411 aa13.56□□□□□ -0.24
VIM-202ENST00000421459 AKNAQ7Z591 1439 aa13.56□□□□□ -0.24
VIM-202ENST00000421459 ATP1B4Q9UN42 357 aaPredicted RBP13.55□□□□□ -0.24
VIM-202ENST00000421459 ADAMTSL3P82987 1691 aa13.55□□□□□ -0.24
VIM-202ENST00000421459 DENND4BO75064 1496 aaPredicted RBP13.54□□□□□ -0.24
VIM-202ENST00000421459 CDK13Q14004 1512 aaKnown RBP13.54□□□□□ -0.24
VIM-202ENST00000421459 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.54□□□□□ -0.241e-6■□□□□ 10.3
VIM-202ENST00000421459 FANCAO15360 1455 aa13.53□□□□□ -0.24
VIM-202ENST00000421459 UBTFP17480 764 aaKnown RBP13.52□□□□□ -0.25
VIM-202ENST00000421459 MADDQ8WXG6 1647 aa13.51□□□□□ -0.25
VIM-202ENST00000421459 TTC37Q6PGP7 1564 aa13.51□□□□□ -0.25
VIM-202ENST00000421459 YEATS2Q9ULM3 1422 aa13.51□□□□□ -0.25
VIM-202ENST00000421459 MLECQ14165 292 aa13.51□□□□□ -0.25
VIM-202ENST00000421459 BCORL1Q5H9F3 1711 aa13.5□□□□□ -0.25
VIM-202ENST00000421459 HSPA2P54652 639 aa13.49□□□□□ -0.25
VIM-202ENST00000421459 EFCAB5A4FU69 1503 aa13.48□□□□□ -0.25
VIM-202ENST00000421459 CHIC1Q5VXU3 224 aa13.47□□□□□ -0.25
VIM-202ENST00000421459 ARHGEF40Q8TER5 1519 aa13.47□□□□□ -0.25
VIM-202ENST00000421459 RICTORQ6R327 1708 aa13.47□□□□□ -0.25
VIM-202ENST00000421459 SIGLEC1Q9BZZ2 1709 aa13.47□□□□□ -0.25
VIM-202ENST00000421459 SCAPERQ9BY12 1400 aa13.47□□□□□ -0.25
VIM-202ENST00000421459 LMTK3Q96Q04 1460 aa13.46□□□□□ -0.25
VIM-202ENST00000421459 ARHGAP35Q9NRY4 1499 aa13.45□□□□□ -0.26
VIM-202ENST00000421459 FBXO41Q8TF61 875 aa13.45□□□□□ -0.26
VIM-202ENST00000421459 PLCH2O75038 1416 aa13.45□□□□□ -0.26
VIM-202ENST00000421459 PCF11O94913 1555 aaKnown RBP13.45□□□□□ -0.26
VIM-202ENST00000421459 RIMS1Q86UR5 1692 aaKnown RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms