RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 ZBTB47Q9UFB7 747 aaPredicted RBP21.42■■□□□ 1.02
PHRF1-203ENST00000416188 CADPSQ9ULU8 1353 aa21.42■■□□□ 1.02
PHRF1-203ENST00000416188 CARMIL1Q5VZK9 1371 aa21.41■■□□□ 1.02
PHRF1-203ENST00000416188 SOGA1O94964 1423 aa21.41■■□□□ 1.02
PHRF1-203ENST00000416188 TONSLQ96HA7 1378 aa21.4■■□□□ 1.02
PHRF1-203ENST00000416188 RRP7BPQ9NSQ0 103 aa21.39■■□□□ 1.02
PHRF1-203ENST00000416188 CANXP27824 592 aaKnown RBP21.38■■□□□ 1.01
PHRF1-203ENST00000416188 KDM2AQ9Y2K7 1162 aa21.37■■□□□ 1.01
PHRF1-203ENST00000416188 CCDC88BA6NC98 1476 aa21.36■■□□□ 1.01
PHRF1-203ENST00000416188 CEP164Q9UPV0 1460 aa21.34■■□□□ 1.01
PHRF1-203ENST00000416188 MLECQ14165 292 aa21.33■■□□□ 1
PHRF1-203ENST00000416188 ATAD2BQ9ULI0 1458 aa21.3■■□□□ 1
PHRF1-203ENST00000416188 CARMIL2Q6F5E8 1435 aa21.3■■□□□ 1
PHRF1-203ENST00000416188 PLEKHG5O94827 1062 aa21.3■■□□□ 1
PHRF1-203ENST00000416188 A0A0G2JS52 829 aa21.22■□□□□ 0.99
PHRF1-203ENST00000416188 CEP162Q5TB80 1403 aa21.22■□□□□ 0.99
PHRF1-203ENST00000416188 OSCARQ8IYS5 282 aa21.21■□□□□ 0.99
PHRF1-203ENST00000416188 CCNB3Q8WWL7 1395 aa21.19■□□□□ 0.98
PHRF1-203ENST00000416188 HAP1P54257 671 aaPredicted RBP21.19■□□□□ 0.98
PHRF1-203ENST00000416188 ZBTB7CA1YPR0 619 aa21.19■□□□□ 0.98
PHRF1-203ENST00000416188 RGL3Q3MIN7 710 aa21.19■□□□□ 0.98
PHRF1-203ENST00000416188 CYB5RLQ6IPT4 315 aa21.18■□□□□ 0.98
PHRF1-203ENST00000416188 DDX10Q13206 875 aaKnown RBP21.16■□□□□ 0.98
PHRF1-203ENST00000416188 TOP2AP11388 1531 aaKnown RBP21.13■□□□□ 0.97
PHRF1-203ENST00000416188 TNIKQ9UKE5 1360 aa21.12■□□□□ 0.97
PHRF1-203ENST00000416188 FANCD2Q9BXW9 1451 aa21.12■□□□□ 0.97
PHRF1-203ENST00000416188 NPM2Q86SE8 214 aaKnown RBP21.11■□□□□ 0.97
PHRF1-203ENST00000416188 FKBP8Q14318 412 aa21.11■□□□□ 0.97
PHRF1-203ENST00000416188 ANP32AP39687 249 aaKnown RBP21.11■□□□□ 0.97
PHRF1-203ENST00000416188 HNRNPUQ00839 825 aaKnown RBP eCLIP21.11■□□□□ 0.97
PHRF1-203ENST00000416188 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
PHRF1-203ENST00000416188 WIZO95785 1651 aa21.1■□□□□ 0.97
PHRF1-203ENST00000416188 FAM9BQ8IZU0 186 aa21.09■□□□□ 0.97
PHRF1-203ENST00000416188 JPH4Q96JJ6 628 aa21.07■□□□□ 0.96
PHRF1-203ENST00000416188 GGT6Q6P531 493 aa21.07■□□□□ 0.96
PHRF1-203ENST00000416188 SMARCA4P51532 1647 aa21.06■□□□□ 0.96
PHRF1-203ENST00000416188 SALL2Q9Y467 1007 aaPredicted RBP21.05■□□□□ 0.96
PHRF1-203ENST00000416188 ABCC8Q09428 1581 aa21.04■□□□□ 0.96
PHRF1-203ENST00000416188 EFCAB2Q5VUJ9 269 aa21.02■□□□□ 0.96
PHRF1-203ENST00000416188 TMC1Q8TDI8 760 aa21.01■□□□□ 0.95
PHRF1-203ENST00000416188 KANK1Q14678 1352 aa21.01■□□□□ 0.95
PHRF1-203ENST00000416188 LMOD2Q6P5Q4 547 aa21.01■□□□□ 0.95
PHRF1-203ENST00000416188 HDGFP51858 240 aaKnown RBP20.99■□□□□ 0.95
PHRF1-203ENST00000416188 POGKQ9P215 609 aa20.96■□□□□ 0.95
PHRF1-203ENST00000416188 HIRIP3Q9BW71 556 aaPredicted RBP20.89■□□□□ 0.93
PHRF1-203ENST00000416188 NCAPD3P42695 1498 aa20.87■□□□□ 0.93
PHRF1-203ENST00000416188 AEBP2Q6ZN18 517 aaPredicted RBP20.85■□□□□ 0.93
PHRF1-203ENST00000416188 MRS2Q9HD23 443 aa20.85■□□□□ 0.93
PHRF1-203ENST00000416188 FMN1Q68DA7 1419 aa20.85■□□□□ 0.93
PHRF1-203ENST00000416188 WDR43Q15061 677 aaKnown RBP eCLIP20.84■□□□□ 0.93
PHRF1-203ENST00000416188 HSP90AA1P07900 732 aaKnown RBP20.84■□□□□ 0.93
PHRF1-203ENST00000416188 RAPGEF2Q9Y4G8 1499 aa20.84■□□□□ 0.93
PHRF1-203ENST00000416188 PTPRGP23470 1445 aa20.84■□□□□ 0.93
PHRF1-203ENST00000416188 EIF4G2P78344 907 aaKnown RBP eCLIP20.83■□□□□ 0.933e-7■■■□□ 15.9
PHRF1-203ENST00000416188 CCDC136Q96JN2 1154 aa20.82■□□□□ 0.92
PHRF1-203ENST00000416188 MIER1Q8N108 512 aa20.81■□□□□ 0.92
PHRF1-203ENST00000416188 UPF2Q9HAU5 1272 aaKnown RBP20.8■□□□□ 0.92
PHRF1-203ENST00000416188 CDCA8Q53HL2 280 aa20.79■□□□□ 0.92
PHRF1-203ENST00000416188 CARD11Q9BXL7 1154 aa20.78■□□□□ 0.92
PHRF1-203ENST00000416188 PPM1GO15355 546 aaPredicted RBP20.78■□□□□ 0.92
PHRF1-203ENST00000416188 KIF3BO15066 747 aa20.77■□□□□ 0.92
PHRF1-203ENST00000416188 FAM69CQ0P6D2 419 aa20.75■□□□□ 0.91
PHRF1-203ENST00000416188 SPAG9O60271 1321 aaKnown RBP20.75■□□□□ 0.91
PHRF1-203ENST00000416188 DNAJC5BQ9UF47 199 aa20.74■□□□□ 0.91
PHRF1-203ENST00000416188 GAPVD1Q14C86 1478 aa20.73■□□□□ 0.91
PHRF1-203ENST00000416188 HNRNPMP52272 730 aaKnown RBP eCLIP20.73■□□□□ 0.911e-6■■■□□ 17.1
PHRF1-203ENST00000416188 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
PHRF1-203ENST00000416188 FHOD3Q2V2M9 1422 aa20.73■□□□□ 0.91
PHRF1-203ENST00000416188 IRX6P78412 446 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-203ENST00000416188 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.73■□□□□ 0.91
PHRF1-203ENST00000416188 ARHGAP35Q9NRY4 1499 aa20.71■□□□□ 0.91
PHRF1-203ENST00000416188 RAD54L2Q9Y4B4 1467 aa20.71■□□□□ 0.91
PHRF1-203ENST00000416188 FGD5Q6ZNL6 1462 aa20.7■□□□□ 0.9
PHRF1-203ENST00000416188 AQRO60306 1485 aaKnown RBP eCLIP20.7■□□□□ 0.92e-7■■■■■ 30.3
PHRF1-203ENST00000416188 DCAF11Q8TEB1 546 aa20.68■□□□□ 0.9
PHRF1-203ENST00000416188 WASHC2CQ9Y4E1 1318 aa20.68■□□□□ 0.9
PHRF1-203ENST00000416188 ANP32BQ92688 251 aaKnown RBP20.68■□□□□ 0.9
PHRF1-203ENST00000416188 SAFB2Q14151 953 aaKnown RBP eCLIP20.68■□□□□ 0.9
PHRF1-203ENST00000416188 KNSTRNQ9Y448 316 aa20.67■□□□□ 0.9
PHRF1-203ENST00000416188 EID1Q9Y6B2 187 aa20.67■□□□□ 0.9
PHRF1-203ENST00000416188 ARXQ96QS3 562 aa20.67■□□□□ 0.9
PHRF1-203ENST00000416188 CFAP53Q96M91 514 aa20.66■□□□□ 0.9
PHRF1-203ENST00000416188 STK26Q9P289 416 aa20.66■□□□□ 0.9
PHRF1-203ENST00000416188 NESP48681 1621 aa20.65■□□□□ 0.9
PHRF1-203ENST00000416188 VPS8Q8N3P4 1428 aa20.63■□□□□ 0.89
PHRF1-203ENST00000416188 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
PHRF1-203ENST00000416188 RSPH4AQ5TD94 716 aa20.63■□□□□ 0.89
PHRF1-203ENST00000416188 ANKRD30AQ9BXX3 1397 aa20.63■□□□□ 0.89
PHRF1-203ENST00000416188 PKD2Q13563 968 aa20.63■□□□□ 0.89
PHRF1-203ENST00000416188 SRPK2P78362 688 aaKnown RBP20.62■□□□□ 0.89
PHRF1-203ENST00000416188 NBR1Q14596 966 aa20.61■□□□□ 0.89
PHRF1-203ENST00000416188 CCDC18Q5T9S5 1454 aa20.6■□□□□ 0.89
PHRF1-203ENST00000416188 MRC2Q9UBG0 1479 aa20.6■□□□□ 0.89
PHRF1-203ENST00000416188 SOX12O15370 315 aa20.59■□□□□ 0.89
PHRF1-203ENST00000416188 EIF5BO60841 1220 aaKnown RBP20.59■□□□□ 0.89
PHRF1-203ENST00000416188 NUP155O75694 1391 aa20.58■□□□□ 0.89
PHRF1-203ENST00000416188 SIN3AQ96ST3 1273 aa20.58■□□□□ 0.89
PHRF1-203ENST00000416188 SENP3-EIF4A1A0A087X0R7 540 aa20.57■□□□□ 0.88
PHRF1-203ENST00000416188 TNNT2P45379 298 aaPredicted RBP20.53■□□□□ 0.88
PHRF1-203ENST00000416188 PAK3O75914 559 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms