RNA–Protein interactions for RNA: ENST00000413731.1

UPF3AP1-201, Transcript of UPF3A pseudogene 1, humanhuman

BASIC

Gene UPF3AP1, Length 1,126 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP1-201ENST00000413731 ERCC6L2Q5T890 1561 aa15.05■□□□□ -0
UPF3AP1-201ENST00000413731 CEP170Q5SW79 1584 aa15.02□□□□□ -0.01
UPF3AP1-201ENST00000413731 GRIN2AQ12879 1464 aa15.01□□□□□ -0.01
UPF3AP1-201ENST00000413731 BIVM-ERCC5R4GMW8 1640 aa14.99□□□□□ -0.01
UPF3AP1-201ENST00000413731 SHROOM2Q13796 1616 aa14.98□□□□□ -0.01
UPF3AP1-201ENST00000413731 NUP160Q12769 1436 aa14.96□□□□□ -0.01
UPF3AP1-201ENST00000413731 TOP2BQ02880 1626 aa14.95□□□□□ -0.02
UPF3AP1-201ENST00000413731 WRNQ14191 1432 aaPredicted RBP eCLIP14.92□□□□□ -0.02
UPF3AP1-201ENST00000413731 KIF13AQ9H1H9 1805 aa14.92□□□□□ -0.02
UPF3AP1-201ENST00000413731 NPM3O75607 178 aaKnown RBP14.91□□□□□ -0.02
UPF3AP1-201ENST00000413731 FHAD1B1AJZ9 1412 aa14.89□□□□□ -0.03
UPF3AP1-201ENST00000413731 ERICH3Q5RHP9 1530 aa14.88□□□□□ -0.03
UPF3AP1-201ENST00000413731 SUPT5HO00267 1087 aaKnown RBP14.85□□□□□ -0.03
UPF3AP1-201ENST00000413731 RUSC2Q8N2Y8 1516 aa14.85□□□□□ -0.03
UPF3AP1-201ENST00000413731 PRG4Q92954 1404 aaPredicted RBP14.79□□□□□ -0.04
UPF3AP1-201ENST00000413731 ADCY10Q96PN6 1610 aa14.75□□□□□ -0.05
UPF3AP1-201ENST00000413731 DIP2BQ9P265 1576 aa14.73□□□□□ -0.05
UPF3AP1-201ENST00000413731 MAPKBP1O60336 1514 aa14.73□□□□□ -0.05
UPF3AP1-201ENST00000413731 ABCC10Q5T3U5 1492 aa14.7□□□□□ -0.06
UPF3AP1-201ENST00000413731 JPH4Q96JJ6 628 aa14.7□□□□□ -0.06
UPF3AP1-201ENST00000413731 TSPOAP1O95153 1857 aa14.69□□□□□ -0.06
UPF3AP1-201ENST00000413731 CUL7Q14999 1698 aa14.68□□□□□ -0.06
UPF3AP1-201ENST00000413731 CNKSR2Q8WXI2 1034 aa14.67□□□□□ -0.06
UPF3AP1-201ENST00000413731 KDM6BO15054 1643 aa14.65□□□□□ -0.06
UPF3AP1-201ENST00000413731 KIAA0586Q9BVV6 1533 aa14.63□□□□□ -0.07
UPF3AP1-201ENST00000413731 FAM69CQ0P6D2 419 aa14.63□□□□□ -0.07
UPF3AP1-201ENST00000413731 ZBTB22O15209 634 aa14.62□□□□□ -0.07
UPF3AP1-201ENST00000413731 SCAF1Q9H7N4 1312 aaKnown RBP14.62□□□□□ -0.07
UPF3AP1-201ENST00000413731 IGF1RP08069 1367 aa14.58□□□□□ -0.08
UPF3AP1-201ENST00000413731 KIF27Q86VH2 1401 aa14.58□□□□□ -0.08
UPF3AP1-201ENST00000413731 NPM1P06748 294 aaKnown RBP eCLIP14.57□□□□□ -0.08
UPF3AP1-201ENST00000413731 PPRC1Q5VV67 1664 aaKnown RBP14.57□□□□□ -0.08
UPF3AP1-201ENST00000413731 IQGAP2Q13576 1575 aa14.53□□□□□ -0.08
UPF3AP1-201ENST00000413731 ABCC2Q92887 1545 aa14.51□□□□□ -0.09
UPF3AP1-201ENST00000413731 PTPRGP23470 1445 aa14.5□□□□□ -0.09
UPF3AP1-201ENST00000413731 MSH5O43196 834 aa14.5□□□□□ -0.09
UPF3AP1-201ENST00000413731 KDM4FA0A1W2PPD8 638 aa14.49□□□□□ -0.09
UPF3AP1-201ENST00000413731 CARMIL1Q5VZK9 1371 aa14.48□□□□□ -0.09
UPF3AP1-201ENST00000413731 GLI2P10070 1586 aa14.48□□□□□ -0.09
UPF3AP1-201ENST00000413731 ASXL2Q76L83 1435 aa14.48□□□□□ -0.09
UPF3AP1-201ENST00000413731 TNIKQ9UKE5 1360 aa14.47□□□□□ -0.09
UPF3AP1-201ENST00000413731 TTBK1Q5TCY1 1321 aaPredicted RBP14.47□□□□□ -0.09
UPF3AP1-201ENST00000413731 CARMIL2Q6F5E8 1435 aa14.46□□□□□ -0.09
UPF3AP1-201ENST00000413731 DISP1Q96F81 1524 aa14.46□□□□□ -0.1
UPF3AP1-201ENST00000413731 UHRF1BP1LA0JNW5 1464 aa14.45□□□□□ -0.1
UPF3AP1-201ENST00000413731 MAP3K4Q9Y6R4 1608 aa14.45□□□□□ -0.1
UPF3AP1-201ENST00000413731 ZCCHC11Q5TAX3 1644 aaKnown RBP14.44□□□□□ -0.1
UPF3AP1-201ENST00000413731 PLB1Q6P1J6 1458 aa14.44□□□□□ -0.1
UPF3AP1-201ENST00000413731 KIAA0556O60303 1618 aa14.43□□□□□ -0.1
UPF3AP1-201ENST00000413731 UACAQ9BZF9 1416 aa14.41□□□□□ -0.1
UPF3AP1-201ENST00000413731 FOXD4L1Q9NU39 408 aa14.41□□□□□ -0.1
UPF3AP1-201ENST00000413731 ADGRL1O94910 1474 aa14.41□□□□□ -0.1
UPF3AP1-201ENST00000413731 UGGT2Q9NYU1 1516 aa14.41□□□□□ -0.1
UPF3AP1-201ENST00000413731 EPRSP07814 1512 aaKnown RBP14.4□□□□□ -0.1
UPF3AP1-201ENST00000413731 KDM5BQ9UGL1 1544 aa14.4□□□□□ -0.1
UPF3AP1-201ENST00000413731 CTTNBP2Q8WZ74 1663 aa14.39□□□□□ -0.11
UPF3AP1-201ENST00000413731 COL17A1Q9UMD9 1497 aaPredicted RBP14.38□□□□□ -0.11
UPF3AP1-201ENST00000413731 RAPGEF2Q9Y4G8 1499 aa14.36□□□□□ -0.11
UPF3AP1-201ENST00000413731 TEX14Q8IWB6 1497 aa14.34□□□□□ -0.11
UPF3AP1-201ENST00000413731 WDR7Q9Y4E6 1490 aa14.31□□□□□ -0.12
UPF3AP1-201ENST00000413731 HECW2Q9P2P5 1572 aa14.3□□□□□ -0.12
UPF3AP1-201ENST00000413731 CFAP43Q8NDM7 1665 aa14.3□□□□□ -0.12
UPF3AP1-201ENST00000413731 ABCA8O94911 1581 aa14.29□□□□□ -0.12
UPF3AP1-201ENST00000413731 KIF21BO75037 1637 aa14.26□□□□□ -0.13
UPF3AP1-201ENST00000413731 ILDR1Q86SU0 546 aaPredicted RBP14.25□□□□□ -0.13
UPF3AP1-201ENST00000413731 MAGI3Q5TCQ9 1506 aa14.23□□□□□ -0.13
UPF3AP1-201ENST00000413731 GOLGA3Q08378 1498 aa14.23□□□□□ -0.13
UPF3AP1-201ENST00000413731 MAPK8IP2Q13387 824 aaPredicted RBP14.22□□□□□ -0.13
UPF3AP1-201ENST00000413731 CD109Q6YHK3 1445 aa14.2□□□□□ -0.14
UPF3AP1-201ENST00000413731 PRXQ9BXM0 1461 aa14.18□□□□□ -0.14
UPF3AP1-201ENST00000413731 SLC24A1O60721 1099 aa14.15□□□□□ -0.14
UPF3AP1-201ENST00000413731 RNF216Q9NWF9 866 aaPredicted RBP14.15□□□□□ -0.14
UPF3AP1-201ENST00000413731 KCNH8Q96L42 1107 aa14.14□□□□□ -0.15
UPF3AP1-201ENST00000413731 ABCA9Q8IUA7 1624 aa14.14□□□□□ -0.15
UPF3AP1-201ENST00000413731 SAMD9Q5K651 1589 aa14.13□□□□□ -0.15
UPF3AP1-201ENST00000413731 ARAP3Q8WWN8 1544 aa14.12□□□□□ -0.15
UPF3AP1-201ENST00000413731 RAPGEF6Q8TEU7 1601 aa14.11□□□□□ -0.15
UPF3AP1-201ENST00000413731 ADAMTSL3P82987 1691 aa14.1□□□□□ -0.15
UPF3AP1-201ENST00000413731 FRMPD1Q5SYB0 1578 aa14.1□□□□□ -0.15
UPF3AP1-201ENST00000413731 ARID3CA6NKF2 412 aa14.1□□□□□ -0.15
UPF3AP1-201ENST00000413731 ATP10BO94823 1461 aa14.1□□□□□ -0.15
UPF3AP1-201ENST00000413731 AMER1Q5JTC6 1135 aaPredicted RBP14.09□□□□□ -0.15
UPF3AP1-201ENST00000413731 RTN4Q9NQC3 1192 aaKnown RBP14.08□□□□□ -0.16
UPF3AP1-201ENST00000413731 BCORL1Q5H9F3 1711 aa14.07□□□□□ -0.16
UPF3AP1-201ENST00000413731 MADDQ8WXG6 1647 aa14.05□□□□□ -0.16
UPF3AP1-201ENST00000413731 P3H3Q8IVL6 736 aa14.04□□□□□ -0.16
UPF3AP1-201ENST00000413731 PTPRMP28827 1452 aa14.04□□□□□ -0.16
UPF3AP1-201ENST00000413731 NEO1Q92859 1461 aa14.03□□□□□ -0.16
UPF3AP1-201ENST00000413731 ARHGEF40Q8TER5 1519 aa14.03□□□□□ -0.16
UPF3AP1-201ENST00000413731 RICTORQ6R327 1708 aa14.02□□□□□ -0.16
UPF3AP1-201ENST00000413731 NUP153P49790 1475 aaKnown RBP14.02□□□□□ -0.16
UPF3AP1-201ENST00000413731 RIMS1Q86UR5 1692 aaKnown RBP14.01□□□□□ -0.17
UPF3AP1-201ENST00000413731 POTEDQ86YR6 584 aa14□□□□□ -0.17
UPF3AP1-201ENST00000413731 PHLDB1Q86UU1 1377 aa13.99□□□□□ -0.17
UPF3AP1-201ENST00000413731 PCF11O94913 1555 aaKnown RBP13.99□□□□□ -0.17
UPF3AP1-201ENST00000413731 SIGLEC1Q9BZZ2 1709 aa13.98□□□□□ -0.17
UPF3AP1-201ENST00000413731 RAPGEF3O95398 923 aa13.98□□□□□ -0.17
UPF3AP1-201ENST00000413731 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
UPF3AP1-201ENST00000413731 TTC37Q6PGP7 1564 aa13.97□□□□□ -0.17
UPF3AP1-201ENST00000413731 CFAP74Q9C0B2 1584 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms