RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 CUX1P39880 1505 aa12.38□□□□□ -0.43
SYNE1-211ENST00000413186 GRIN2BQ13224 1484 aa12.37□□□□□ -0.43
SYNE1-211ENST00000413186 POLA1P09884 1462 aaPredicted RBP12.37□□□□□ -0.43
SYNE1-211ENST00000413186 RUSC2Q8N2Y8 1516 aa12.35□□□□□ -0.43
SYNE1-211ENST00000413186 FMN1Q68DA7 1419 aa12.35□□□□□ -0.43
SYNE1-211ENST00000413186 AQRO60306 1485 aaKnown RBP eCLIP12.34□□□□□ -0.43
SYNE1-211ENST00000413186 JPH4Q96JJ6 628 aa12.34□□□□□ -0.43
SYNE1-211ENST00000413186 OSCARQ8IYS5 282 aa12.32□□□□□ -0.44
SYNE1-211ENST00000413186 TSPY4P0CV99 314 aa12.32□□□□□ -0.44
SYNE1-211ENST00000413186 TSPY10P0CW01 314 aa12.32□□□□□ -0.44
SYNE1-211ENST00000413186 VPS8Q8N3P4 1428 aa12.31□□□□□ -0.44
SYNE1-211ENST00000413186 KCNH8Q96L42 1107 aa12.31□□□□□ -0.44
SYNE1-211ENST00000413186 ABCA10Q8WWZ4 1543 aa12.28□□□□□ -0.44
SYNE1-211ENST00000413186 URB2Q14146 1524 aaKnown RBP12.26□□□□□ -0.45
SYNE1-211ENST00000413186 CENPBP07199 599 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-211ENST00000413186 CFDP1Q9UEE9 299 aaPredicted RBP12.26□□□□□ -0.45
SYNE1-211ENST00000413186 ACIN1Q9UKV3 1341 aaKnown RBP12.25□□□□□ -0.45
SYNE1-211ENST00000413186 ERICH3Q5RHP9 1530 aa12.25□□□□□ -0.45
SYNE1-211ENST00000413186 ESF1Q9H501 851 aaKnown RBP12.23□□□□□ -0.45
SYNE1-211ENST00000413186 KIF21BO75037 1637 aa12.22□□□□□ -0.45
SYNE1-211ENST00000413186 CCNB3Q8WWL7 1395 aa12.21□□□□□ -0.45
SYNE1-211ENST00000413186 FHOD3Q2V2M9 1422 aa12.21□□□□□ -0.45
SYNE1-211ENST00000413186 PTPRGP23470 1445 aa12.21□□□□□ -0.46
SYNE1-211ENST00000413186 BIVM-ERCC5R4GMW8 1640 aa12.2□□□□□ -0.46
SYNE1-211ENST00000413186 PRXQ9BXM0 1461 aa12.2□□□□□ -0.46
SYNE1-211ENST00000413186 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
SYNE1-211ENST00000413186 CHIC2Q9UKJ5 165 aa12.19□□□□□ -0.46
SYNE1-211ENST00000413186 NEUROD1Q13562 356 aa12.16□□□□□ -0.46
SYNE1-211ENST00000413186 MAGI1Q96QZ7 1491 aaPredicted RBP12.16□□□□□ -0.46
SYNE1-211ENST00000413186 CUL7Q14999 1698 aa12.13□□□□□ -0.47
SYNE1-211ENST00000413186 ARHGAP35Q9NRY4 1499 aa12.13□□□□□ -0.47
SYNE1-211ENST00000413186 SYNJ2O15056 1496 aa12.13□□□□□ -0.47
SYNE1-211ENST00000413186 CCDC18Q5T9S5 1454 aa12.12□□□□□ -0.47
SYNE1-211ENST00000413186 EFCAB2Q5VUJ9 269 aa12.1□□□□□ -0.47
SYNE1-211ENST00000413186 KIAA0586Q9BVV6 1533 aa12.1□□□□□ -0.47
SYNE1-211ENST00000413186 EFCAB5A4FU69 1503 aa12.09□□□□□ -0.47
SYNE1-211ENST00000413186 PRDM2Q13029 1718 aa12.09□□□□□ -0.47
SYNE1-211ENST00000413186 YTHDC1Q96MU7 727 aaKnown RBP12.09□□□□□ -0.47
SYNE1-211ENST00000413186 RRP7BPQ9NSQ0 103 aa12.09□□□□□ -0.47
SYNE1-211ENST00000413186 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.08□□□□□ -0.48
SYNE1-211ENST00000413186 PRG4Q92954 1404 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-211ENST00000413186 ZNF608Q9ULD9 1512 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-211ENST00000413186 KANK4Q5T7N3 995 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-211ENST00000413186 KIF21AQ7Z4S6 1674 aa12.08□□□□□ -0.48
SYNE1-211ENST00000413186 TRHP20396 242 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-211ENST00000413186 CYB5RLQ6IPT4 315 aa12.07□□□□□ -0.48
SYNE1-211ENST00000413186 WDR62O43379 1518 aa12.07□□□□□ -0.48
SYNE1-211ENST00000413186 GRIN2AQ12879 1464 aa12.06□□□□□ -0.48
SYNE1-211ENST00000413186 POLR3GLQ9BT43 218 aa12.05□□□□□ -0.48
SYNE1-211ENST00000413186 RSPH4AQ5TD94 716 aa12.05□□□□□ -0.48
SYNE1-211ENST00000413186 ZNF326Q5BKZ1 582 aaKnown RBP12.04□□□□□ -0.48
SYNE1-211ENST00000413186 TONSLQ96HA7 1378 aa12.03□□□□□ -0.48
SYNE1-211ENST00000413186 STAG3Q9UJ98 1225 aa12.03□□□□□ -0.48
SYNE1-211ENST00000413186 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
SYNE1-211ENST00000413186 SLC4A1APQ9BWU0 796 aaKnown RBP12.02□□□□□ -0.48
SYNE1-211ENST00000413186 IQGAP2Q13576 1575 aa12.02□□□□□ -0.49
SYNE1-211ENST00000413186 CHGAP10645 457 aaKnown RBP11.99□□□□□ -0.49
SYNE1-211ENST00000413186 FYCO1Q9BQS8 1478 aa11.99□□□□□ -0.49
SYNE1-211ENST00000413186 BCANQ96GW7 911 aa11.99□□□□□ -0.49
SYNE1-211ENST00000413186 ARID4BQ4LE39 1312 aaPredicted RBP11.98□□□□□ -0.49
SYNE1-211ENST00000413186 ARAP1Q96P48 1450 aa11.97□□□□□ -0.49
SYNE1-211ENST00000413186 WDR97A6NE52 1622 aa11.96□□□□□ -0.49
SYNE1-211ENST00000413186 ANKRD30AQ9BXX3 1397 aa11.95□□□□□ -0.5
SYNE1-211ENST00000413186 KANK1Q14678 1352 aa11.95□□□□□ -0.5
SYNE1-211ENST00000413186 SPAG9O60271 1321 aaKnown RBP11.92□□□□□ -0.5
SYNE1-211ENST00000413186 CLSPNQ9HAW4 1339 aa11.92□□□□□ -0.5
SYNE1-211ENST00000413186 SETD5Q9C0A6 1442 aa11.92□□□□□ -0.5
SYNE1-211ENST00000413186 UACAQ9BZF9 1416 aa11.91□□□□□ -0.5
SYNE1-211ENST00000413186 EIF4G3O43432 1585 aaKnown RBP11.91□□□□□ -0.5
SYNE1-211ENST00000413186 HECW1Q76N89 1606 aa11.9□□□□□ -0.5
SYNE1-211ENST00000413186 LRRC9Q6ZRR7 1453 aa11.9□□□□□ -0.5
SYNE1-211ENST00000413186 PLPPR3Q6T4P5 718 aa11.9□□□□□ -0.5
SYNE1-211ENST00000413186 ADAMTS12P58397 1594 aa11.9□□□□□ -0.5
SYNE1-211ENST00000413186 HNRNPMP52272 730 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNE1-211ENST00000413186 DIEXFQ68CQ4 756 aaKnown RBP11.88□□□□□ -0.51
SYNE1-211ENST00000413186 FAM69CQ0P6D2 419 aa11.88□□□□□ -0.51
SYNE1-211ENST00000413186 MYOM3Q5VTT5 1437 aa11.88□□□□□ -0.51
SYNE1-211ENST00000413186 TROQ12816 1431 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-211ENST00000413186 ZNF316A6NFI3 1004 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-211ENST00000413186 ABCA5Q8WWZ7 1642 aa11.86□□□□□ -0.51
SYNE1-211ENST00000413186 EHBP1L1Q8N3D4 1523 aa11.85□□□□□ -0.51
SYNE1-211ENST00000413186 NCOA2Q15596 1464 aa11.84□□□□□ -0.51
SYNE1-211ENST00000413186 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
SYNE1-211ENST00000413186 TARBP1Q13395 1621 aaKnown RBP11.84□□□□□ -0.51
SYNE1-211ENST00000413186 GGT6Q6P531 493 aa11.83□□□□□ -0.52
SYNE1-211ENST00000413186 KDM2AQ9Y2K7 1162 aa11.83□□□□□ -0.52
SYNE1-211ENST00000413186 EPRSP07814 1512 aaKnown RBP11.83□□□□□ -0.52
SYNE1-211ENST00000413186 PPP1R15AO75807 674 aaPredicted RBP11.82□□□□□ -0.52
SYNE1-211ENST00000413186 NEFLP07196 543 aa11.82□□□□□ -0.52
SYNE1-211ENST00000413186 TIMELESSQ9UNS1 1208 aa11.82□□□□□ -0.52
SYNE1-211ENST00000413186 PBRM1Q86U86 1689 aa11.82□□□□□ -0.52
SYNE1-211ENST00000413186 NUP160Q12769 1436 aa11.82□□□□□ -0.52
SYNE1-211ENST00000413186 KIF3BO15066 747 aa11.81□□□□□ -0.52
SYNE1-211ENST00000413186 TIAM1Q13009 1591 aa11.81□□□□□ -0.52
SYNE1-211ENST00000413186 THOC2Q8NI27 1593 aaKnown RBP11.81□□□□□ -0.52
SYNE1-211ENST00000413186 NUP155O75694 1391 aa11.81□□□□□ -0.52
SYNE1-211ENST00000413186 RAB3GAP2Q9H2M9 1393 aa11.8□□□□□ -0.52
SYNE1-211ENST00000413186 UGGT2Q9NYU1 1516 aa11.8□□□□□ -0.52
SYNE1-211ENST00000413186 MLECQ14165 292 aa11.8□□□□□ -0.52
SYNE1-211ENST00000413186 PLEKHH2Q8IVE3 1493 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms