RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 PIP4P2Q8N4L2 257 aa7.97□□□□□ -1.13
SF3B1-202ENST00000409915 SMARCA2P51531 1590 aa7.96□□□□□ -1.14
SF3B1-202ENST00000409915 NCAPD3P42695 1498 aa7.95□□□□□ -1.14
SF3B1-202ENST00000409915 HOMEZQ8IX15 550 aa7.95□□□□□ -1.14
SF3B1-202ENST00000409915 BAZ1BQ9UIG0 1483 aaKnown RBP7.94□□□□□ -1.14
SF3B1-202ENST00000409915 HMGXB3Q12766 1538 aa7.93□□□□□ -1.14
SF3B1-202ENST00000409915 PEG3Q9GZU2 1588 aa7.93□□□□□ -1.14
SF3B1-202ENST00000409915 SPDYE4A6NLX3 237 aa7.93□□□□□ -1.14
SF3B1-202ENST00000409915 WIZO95785 1651 aa7.92□□□□□ -1.14
SF3B1-202ENST00000409915 SPDYE1Q8NFV5 336 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-202ENST00000409915 RSF1Q96T23 1441 aaPredicted RBP7.92□□□□□ -1.14
SF3B1-202ENST00000409915 HAX1O00165 279 aa7.91□□□□□ -1.14
SF3B1-202ENST00000409915 FXR2P51116 673 aaKnown RBP eCLIP7.91□□□□□ -1.149e-8■■■□□ 15.1
SF3B1-202ENST00000409915 GTF3C3Q9Y5Q9 886 aa7.91□□□□□ -1.14
SF3B1-202ENST00000409915 ERICH6Q7L0X2 663 aa7.87□□□□□ -1.15
SF3B1-202ENST00000409915 CHADLQ6NUI6 762 aa7.85□□□□□ -1.15
SF3B1-202ENST00000409915 PRKAR2AP13861 404 aaKnown RBP7.84□□□□□ -1.15
SF3B1-202ENST00000409915 KDM2AQ9Y2K7 1162 aa7.84□□□□□ -1.15
SF3B1-202ENST00000409915 TOP2AP11388 1531 aaKnown RBP7.83□□□□□ -1.16
SF3B1-202ENST00000409915 NESP48681 1621 aa7.82□□□□□ -1.16
SF3B1-202ENST00000409915 PRR29P0C7W0 189 aa7.82□□□□□ -1.16
SF3B1-202ENST00000409915 SP7Q8TDD2 431 aaPredicted RBP7.82□□□□□ -1.16
SF3B1-202ENST00000409915 RANGAP1P46060 587 aaPredicted RBP7.81□□□□□ -1.16
SF3B1-202ENST00000409915 EVX2Q03828 476 aa7.79□□□□□ -1.16
SF3B1-202ENST00000409915 PROM2Q8N271 834 aa7.78□□□□□ -1.16
SF3B1-202ENST00000409915 SUPT5HO00267 1087 aaKnown RBP7.77□□□□□ -1.17
SF3B1-202ENST00000409915 ERCC6Q03468 1493 aa7.75□□□□□ -1.17
SF3B1-202ENST00000409915 CCDC88BA6NC98 1476 aa7.75□□□□□ -1.17
SF3B1-202ENST00000409915 TMEM132AQ24JP5 1023 aa7.74□□□□□ -1.17
SF3B1-202ENST00000409915 LAMC3Q9Y6N6 1575 aa7.74□□□□□ -1.17
SF3B1-202ENST00000409915 CADPSQ9ULU8 1353 aa7.73□□□□□ -1.17
SF3B1-202ENST00000409915 CREBZFQ9NS37 354 aa7.72□□□□□ -1.17
SF3B1-202ENST00000409915 KIF21AQ7Z4S6 1674 aa7.7□□□□□ -1.18
SF3B1-202ENST00000409915 C14orf37Q86TY3 774 aa7.7□□□□□ -1.18
SF3B1-202ENST00000409915 CFTRP13569 1480 aa7.69□□□□□ -1.18
SF3B1-202ENST00000409915 PELP1Q8IZL8 1130 aaKnown RBP7.69□□□□□ -1.18
SF3B1-202ENST00000409915 PDS5BQ9NTI5 1447 aa7.69□□□□□ -1.18
SF3B1-202ENST00000409915 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.68□□□□□ -1.18
SF3B1-202ENST00000409915 THOC2Q8NI27 1593 aaKnown RBP7.67□□□□□ -1.18
SF3B1-202ENST00000409915 PODXL2Q9NZ53 605 aa7.67□□□□□ -1.18
SF3B1-202ENST00000409915 FANCD2Q9BXW9 1451 aa7.67□□□□□ -1.18
SF3B1-202ENST00000409915 PAXIP1Q6ZW49 1069 aaPredicted RBP7.66□□□□□ -1.18
SF3B1-202ENST00000409915 STAG3Q9UJ98 1225 aa7.66□□□□□ -1.18
SF3B1-202ENST00000409915 FARP1Q9Y4F1 1045 aaPredicted RBP7.66□□□□□ -1.18
SF3B1-202ENST00000409915 C19orf67A6NJJ6 358 aa7.65□□□□□ -1.18
SF3B1-202ENST00000409915 CEP164Q9UPV0 1460 aa7.65□□□□□ -1.18
SF3B1-202ENST00000409915 MNX1P50219 401 aaPredicted RBP7.64□□□□□ -1.19
SF3B1-202ENST00000409915 CFAP44Q96MT7 982 aa7.64□□□□□ -1.19
SF3B1-202ENST00000409915 FBXO3Q9UK99 471 aa7.64□□□□□ -1.19
SF3B1-202ENST00000409915 MRC2Q9UBG0 1479 aa7.63□□□□□ -1.19
SF3B1-202ENST00000409915 MYT1Q01538 1121 aa7.63□□□□□ -1.19
SF3B1-202ENST00000409915 NBR1Q14596 966 aa7.63□□□□□ -1.19
SF3B1-202ENST00000409915 BBXQ8WY36 941 aaPredicted RBP7.63□□□□□ -1.19
SF3B1-202ENST00000409915 CUX2O14529 1486 aa7.62□□□□□ -1.19
SF3B1-202ENST00000409915 PRDM2Q13029 1718 aa7.62□□□□□ -1.19
SF3B1-202ENST00000409915 WDR62O43379 1518 aa7.61□□□□□ -1.19
SF3B1-202ENST00000409915 URB2Q14146 1524 aaKnown RBP7.6□□□□□ -1.19
SF3B1-202ENST00000409915 CD44P16070 742 aaKnown RBP7.59□□□□□ -1.19
SF3B1-202ENST00000409915 PKD2Q13563 968 aa7.59□□□□□ -1.19
SF3B1-202ENST00000409915 GABBR2O75899 941 aa7.56□□□□□ -1.2
SF3B1-202ENST00000409915 TSHZ2Q9NRE2 1034 aa7.56□□□□□ -1.2
SF3B1-202ENST00000409915 TOPBP1Q92547 1522 aa7.55□□□□□ -1.2
SF3B1-202ENST00000409915 VASPP50552 380 aaPredicted RBP7.54□□□□□ -1.2
SF3B1-202ENST00000409915 DNMBPQ6XZF7 1577 aa7.54□□□□□ -1.2
SF3B1-202ENST00000409915 NPM1P06748 294 aaKnown RBP eCLIP7.52□□□□□ -1.21
SF3B1-202ENST00000409915 ZRANB1Q9UGI0 708 aa7.52□□□□□ -1.21
SF3B1-202ENST00000409915 CUX1P39880 1505 aa7.52□□□□□ -1.21
SF3B1-202ENST00000409915 IFNLR1Q8IU57 520 aaPredicted RBP7.51□□□□□ -1.21
SF3B1-202ENST00000409915 MIER1Q8N108 512 aa7.51□□□□□ -1.21
SF3B1-202ENST00000409915 ABCC8Q09428 1581 aa7.5□□□□□ -1.21
SF3B1-202ENST00000409915 POLA1P09884 1462 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-202ENST00000409915 PAK3O75914 559 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-202ENST00000409915 SPRYD3Q8NCJ5 442 aa7.49□□□□□ -1.21
SF3B1-202ENST00000409915 FGD5Q6ZNL6 1462 aa7.49□□□□□ -1.21
SF3B1-202ENST00000409915 ZNF608Q9ULD9 1512 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-202ENST00000409915 KLHL34Q8N239 644 aa7.48□□□□□ -1.21
SF3B1-202ENST00000409915 PHF12Q96QT6 1004 aa7.48□□□□□ -1.21
SF3B1-202ENST00000409915 IFT140Q96RY7 1462 aa7.48□□□□□ -1.21
SF3B1-202ENST00000409915 RAD54L2Q9Y4B4 1467 aa7.48□□□□□ -1.21
SF3B1-202ENST00000409915 SYNJ1O43426 1573 aa7.47□□□□□ -1.21
SF3B1-202ENST00000409915 NPM2Q86SE8 214 aaKnown RBP7.47□□□□□ -1.21
SF3B1-202ENST00000409915 RASEFQ8IZ41 740 aa7.47□□□□□ -1.21
SF3B1-202ENST00000409915 WRNQ14191 1432 aaPredicted RBP eCLIP7.46□□□□□ -1.21
SF3B1-202ENST00000409915 PLCD3Q8N3E9 789 aa7.46□□□□□ -1.22
SF3B1-202ENST00000409915 TARBP1Q13395 1621 aaKnown RBP7.45□□□□□ -1.22
SF3B1-202ENST00000409915 ZNF579Q8NAF0 562 aaKnown RBP7.45□□□□□ -1.22
SF3B1-202ENST00000409915 DCBLD2Q96PD2 775 aa7.45□□□□□ -1.22
SF3B1-202ENST00000409915 EIF4G3O43432 1585 aaKnown RBP7.45□□□□□ -1.22
SF3B1-202ENST00000409915 SOGA1O94964 1423 aa7.44□□□□□ -1.22
SF3B1-202ENST00000409915 PLEKHG5O94827 1062 aa7.44□□□□□ -1.22
SF3B1-202ENST00000409915 TSPYL2Q9H2G4 693 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-202ENST00000409915 DNAJC5Q9H3Z4 198 aa7.44□□□□□ -1.22
SF3B1-202ENST00000409915 TOP2BQ02880 1626 aa7.44□□□□□ -1.22
SF3B1-202ENST00000409915 AQRO60306 1485 aaKnown RBP eCLIP7.43□□□□□ -1.223e-9■■□□□ 14.5
SF3B1-202ENST00000409915 BIVM-ERCC5R4GMW8 1640 aa7.43□□□□□ -1.22
SF3B1-202ENST00000409915 GALR2O43603 387 aaPredicted RBP7.43□□□□□ -1.22
SF3B1-202ENST00000409915 POTEIP0CG38 1075 aa7.43□□□□□ -1.22
SF3B1-202ENST00000409915 TDRD9Q8NDG6 1382 aaKnown RBP7.43□□□□□ -1.22
SF3B1-202ENST00000409915 TTBK1Q5TCY1 1321 aaPredicted RBP7.42□□□□□ -1.22
SF3B1-202ENST00000409915 ECM2O94769 699 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms