RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 SCAF1Q9H7N4 1312 aaKnown RBP10.2□□□□□ -0.78
SYNE1-210ENST00000409694 FTSJ3Q8IY81 847 aaKnown RBP10.2□□□□□ -0.78
SYNE1-210ENST00000409694 NOC3LQ8WTT2 800 aaKnown RBP10.19□□□□□ -0.78
SYNE1-210ENST00000409694 MRS2Q9HD23 443 aa10.18□□□□□ -0.78
SYNE1-210ENST00000409694 TULP1O00294 542 aaPredicted RBP10.18□□□□□ -0.78
SYNE1-210ENST00000409694 CFAP53Q96M91 514 aa10.18□□□□□ -0.78
SYNE1-210ENST00000409694 MS4A1P11836 297 aa10.17□□□□□ -0.78
SYNE1-210ENST00000409694 A0A0G2JS52 829 aa10.16□□□□□ -0.78
SYNE1-210ENST00000409694 GOLGA6L4A6NEF3 574 aa10.16□□□□□ -0.78
SYNE1-210ENST00000409694 PNNQ9H307 717 aaKnown RBP10.16□□□□□ -0.78
SYNE1-210ENST00000409694 NPM1P06748 294 aaKnown RBP eCLIP10.16□□□□□ -0.78
SYNE1-210ENST00000409694 GOLGA6L1Q8N7Z2 621 aa10.16□□□□□ -0.78
SYNE1-210ENST00000409694 HSP90AB1P08238 724 aaKnown RBP10.15□□□□□ -0.78
SYNE1-210ENST00000409694 CDCA8Q53HL2 280 aa10.15□□□□□ -0.78
SYNE1-210ENST00000409694 FGD1P98174 961 aa10.15□□□□□ -0.78
SYNE1-210ENST00000409694 CLSTN1O94985 981 aa10.15□□□□□ -0.79
SYNE1-210ENST00000409694 MCCP23508 829 aa10.14□□□□□ -0.79
SYNE1-210ENST00000409694 TNNT3P45378 269 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-210ENST00000409694 DRC7Q8IY82 874 aa10.14□□□□□ -0.79
SYNE1-210ENST00000409694 SETQ01105 290 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-210ENST00000409694 SALL2Q9Y467 1007 aaPredicted RBP10.14□□□□□ -0.79
SYNE1-210ENST00000409694 PLCB2Q00722 1185 aa10.13□□□□□ -0.79
SYNE1-210ENST00000409694 GOLGA2Q08379 1002 aa10.13□□□□□ -0.79
SYNE1-210ENST00000409694 DCAF1Q9Y4B6 1507 aa10.12□□□□□ -0.79
SYNE1-210ENST00000409694 CALRP27797 417 aaKnown RBP10.12□□□□□ -0.79
SYNE1-210ENST00000409694 EIF4G2P78344 907 aaKnown RBP eCLIP10.11□□□□□ -0.79
SYNE1-210ENST00000409694 HSCBQ8IWL3 235 aa10.11□□□□□ -0.79
SYNE1-210ENST00000409694 DDX10Q13206 875 aaKnown RBP10.11□□□□□ -0.79
SYNE1-210ENST00000409694 NPHP1O15259 732 aa10.1□□□□□ -0.79
SYNE1-210ENST00000409694 KCNJ4P48050 445 aa10.1□□□□□ -0.79
SYNE1-210ENST00000409694 TPM4P67936 248 aa10.09□□□□□ -0.79
SYNE1-210ENST00000409694 HTATSF1O43719 755 aaKnown RBP10.09□□□□□ -0.79
SYNE1-210ENST00000409694 NOP58Q9Y2X3 529 aaKnown RBP10.09□□□□□ -0.79
SYNE1-210ENST00000409694 A0A0U1RQG5 324 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-210ENST00000409694 CCDC34Q96HJ3 373 aa10.08□□□□□ -0.8
SYNE1-210ENST00000409694 GNL2Q13823 731 aaKnown RBP10.08□□□□□ -0.8
SYNE1-210ENST00000409694 SYAP1Q96A49 352 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-210ENST00000409694 OS9Q13438 667 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-210ENST00000409694 C14orf37Q86TY3 774 aa10.08□□□□□ -0.8
SYNE1-210ENST00000409694 HAP1P54257 671 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-210ENST00000409694 MAPK8IP3Q9UPT6 1336 aa10.07□□□□□ -0.8
SYNE1-210ENST00000409694 PPP1R15AO75807 674 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-210ENST00000409694 CCDC180Q9P1Z9 1646 aa10.06□□□□□ -0.8
SYNE1-210ENST00000409694 TPRNQ4KMQ1 711 aa10.05□□□□□ -0.8
SYNE1-210ENST00000409694 KNSTRNQ9Y448 316 aa10.05□□□□□ -0.8
SYNE1-210ENST00000409694 PRM3Q9NNZ6 103 aa10.05□□□□□ -0.8
SYNE1-210ENST00000409694 TSPY4P0CV99 314 aa10.04□□□□□ -0.8
SYNE1-210ENST00000409694 TSPY10P0CW01 314 aa10.04□□□□□ -0.8
SYNE1-210ENST00000409694 ZBTB7CA1YPR0 619 aa10.04□□□□□ -0.8
SYNE1-210ENST00000409694 NAP1L2Q9ULW6 460 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-210ENST00000409694 ARID3CA6NKF2 412 aa10.04□□□□□ -0.8
SYNE1-210ENST00000409694 ARID4BQ4LE39 1312 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-210ENST00000409694 NUDCQ9Y266 331 aa10.03□□□□□ -0.8
SYNE1-210ENST00000409694 P3H3Q8IVL6 736 aa10.03□□□□□ -0.8
SYNE1-210ENST00000409694 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.03□□□□□ -0.8
SYNE1-210ENST00000409694 NCBP3Q53F19 620 aaKnown RBP10.03□□□□□ -0.8
SYNE1-210ENST00000409694 PLPPR3Q6T4P5 718 aa10.02□□□□□ -0.8
SYNE1-210ENST00000409694 GBP4Q96PP9 640 aa10.02□□□□□ -0.8
SYNE1-210ENST00000409694 CSPP1Q1MSJ5 1256 aa10.02□□□□□ -0.81
SYNE1-210ENST00000409694 AMER1Q5JTC6 1135 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-210ENST00000409694 RSF1Q96T23 1441 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-210ENST00000409694 CSRNP3Q8WYN3 585 aa10□□□□□ -0.81
SYNE1-210ENST00000409694 MTUS2Q5JR59 1369 aa10□□□□□ -0.81
SYNE1-210ENST00000409694 PHF14O94880 888 aa9.99□□□□□ -0.81
SYNE1-210ENST00000409694 PPP4R2Q9NY27 417 aa9.98□□□□□ -0.81
SYNE1-210ENST00000409694 KDM2AQ9Y2K7 1162 aa9.98□□□□□ -0.81
SYNE1-210ENST00000409694 CEP89Q96ST8 783 aa9.98□□□□□ -0.81
SYNE1-210ENST00000409694 IRX6P78412 446 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-210ENST00000409694 KIAA1211Q6ZU35 1233 aa9.97□□□□□ -0.81
SYNE1-210ENST00000409694 LAS1LQ9Y4W2 734 aaKnown RBP9.97□□□□□ -0.81
SYNE1-210ENST00000409694 CCDC70Q6NSX1 233 aa9.96□□□□□ -0.82
SYNE1-210ENST00000409694 RTN4Q9NQC3 1192 aaKnown RBP9.95□□□□□ -0.82
SYNE1-210ENST00000409694 GPS2Q13227 327 aa9.95□□□□□ -0.82
SYNE1-210ENST00000409694 TPM3P06753 285 aa9.95□□□□□ -0.82
SYNE1-210ENST00000409694 TAOK2Q9UL54 1235 aa9.94□□□□□ -0.82
SYNE1-210ENST00000409694 CHMP4AQ9BY43 222 aa9.93□□□□□ -0.82
SYNE1-210ENST00000409694 GPATCH3Q96I76 525 aa9.93□□□□□ -0.82
SYNE1-210ENST00000409694 TMX4Q9H1E5 349 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-210ENST00000409694 ISY1Q9ULR0 285 aaKnown RBP9.92□□□□□ -0.82
SYNE1-210ENST00000409694 RGS3P49796 1198 aa9.92□□□□□ -0.82
SYNE1-210ENST00000409694 CALD1Q05682 793 aaKnown RBP9.9□□□□□ -0.82
SYNE1-210ENST00000409694 ABCC9O60706 1549 aa9.9□□□□□ -0.83
SYNE1-210ENST00000409694 SCRIBQ14160 1630 aa9.9□□□□□ -0.83
SYNE1-210ENST00000409694 RRP12Q5JTH9 1297 aaKnown RBP9.89□□□□□ -0.83
SYNE1-210ENST00000409694 CHIC2Q9UKJ5 165 aa9.89□□□□□ -0.83
SYNE1-210ENST00000409694 TPM2P07951 284 aa9.89□□□□□ -0.83
SYNE1-210ENST00000409694 TSR1Q2NL82 804 aaKnown RBP9.89□□□□□ -0.83
SYNE1-210ENST00000409694 CHMP4CQ96CF2 233 aa9.89□□□□□ -0.83
SYNE1-210ENST00000409694 KIF3AQ9Y496 699 aa9.89□□□□□ -0.83
SYNE1-210ENST00000409694 FRAT1Q92837 279 aaPredicted RBP9.89□□□□□ -0.83
SYNE1-210ENST00000409694 IPO8O15397 1037 aaKnown RBP9.88□□□□□ -0.83
SYNE1-210ENST00000409694 HDAC5Q9UQL6 1122 aa9.88□□□□□ -0.83
SYNE1-210ENST00000409694 GOLGA6L3A6NEY3 463 aa9.88□□□□□ -0.83
SYNE1-210ENST00000409694 DEKP35659 375 aaKnown RBP9.87□□□□□ -0.83
SYNE1-210ENST00000409694 PABPN1Q86U42 306 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE1-210ENST00000409694 NOM1Q5C9Z4 860 aaKnown RBP9.87□□□□□ -0.83
SYNE1-210ENST00000409694 TPM1P09493 284 aa9.87□□□□□ -0.83
SYNE1-210ENST00000409694 KRI1Q8N9T8 703 aaKnown RBP9.87□□□□□ -0.83
SYNE1-210ENST00000409694 TEX35Q5T0J7 233 aa9.86□□□□□ -0.83
SYNE1-210ENST00000409694 SUPT16HQ9Y5B9 1047 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms