RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 VPS8Q8N3P4 1428 aa22.19■■□□□ 1.14
GPNMB-203ENST00000409458 SYNJ2O15056 1496 aa22.13■■□□□ 1.13
GPNMB-203ENST00000409458 GRIN2AQ12879 1464 aa22.13■■□□□ 1.13
GPNMB-203ENST00000409458 EFCAB5A4FU69 1503 aa22.1■■□□□ 1.13
GPNMB-203ENST00000409458 IQGAP2Q13576 1575 aa22.07■■□□□ 1.12
GPNMB-203ENST00000409458 SAMD9Q5K651 1589 aa22.06■■□□□ 1.12
GPNMB-203ENST00000409458 CEP170Q5SW79 1584 aa22.03■■□□□ 1.12
GPNMB-203ENST00000409458 PPARGC1BQ86YN6 1023 aaKnown RBP22.03■■□□□ 1.12
GPNMB-203ENST00000409458 CHMP7Q8WUX9 453 aaPredicted RBP22.01■■□□□ 1.11
GPNMB-203ENST00000409458 FHOD3Q2V2M9 1422 aa22.01■■□□□ 1.11
GPNMB-203ENST00000409458 KIAA0586Q9BVV6 1533 aa21.99■■□□□ 1.11
GPNMB-203ENST00000409458 P3H3Q8IVL6 736 aa21.98■■□□□ 1.11
GPNMB-203ENST00000409458 NUP160Q12769 1436 aa21.97■■□□□ 1.11
GPNMB-203ENST00000409458 FBLN2P98095 1184 aa21.97■■□□□ 1.11
GPNMB-203ENST00000409458 CHD1O14646 1710 aa21.96■■□□□ 1.11
GPNMB-203ENST00000409458 UGGT2Q9NYU1 1516 aa21.96■■□□□ 1.11
GPNMB-203ENST00000409458 TRIM26Q12899 539 aaPredicted RBP21.94■■□□□ 1.1
GPNMB-203ENST00000409458 PCGF6Q9BYE7 350 aa21.94■■□□□ 1.1
GPNMB-203ENST00000409458 PCF11O94913 1555 aaKnown RBP21.94■■□□□ 1.1
GPNMB-203ENST00000409458 TTBK1Q5TCY1 1321 aaPredicted RBP21.88■■□□□ 1.09
GPNMB-203ENST00000409458 KIAA0556O60303 1618 aa21.87■■□□□ 1.09
GPNMB-203ENST00000409458 FMN1Q68DA7 1419 aa21.86■■□□□ 1.09
GPNMB-203ENST00000409458 APLP2Q06481 763 aa21.86■■□□□ 1.09
GPNMB-203ENST00000409458 DISP1Q96F81 1524 aa21.85■■□□□ 1.09
GPNMB-203ENST00000409458 FYCO1Q9BQS8 1478 aa21.85■■□□□ 1.09
GPNMB-203ENST00000409458 CASKIN1Q8WXD9 1431 aa21.83■■□□□ 1.08
GPNMB-203ENST00000409458 TIAM1Q13009 1591 aa21.82■■□□□ 1.08
GPNMB-203ENST00000409458 CFAP43Q8NDM7 1665 aa21.82■■□□□ 1.08
GPNMB-203ENST00000409458 MAP3K1Q13233 1512 aa21.8■■□□□ 1.08
GPNMB-203ENST00000409458 LRRIQ1Q96JM4 1722 aa21.76■■□□□ 1.07
GPNMB-203ENST00000409458 KANK4Q5T7N3 995 aaPredicted RBP21.75■■□□□ 1.07
GPNMB-203ENST00000409458 JPH4Q96JJ6 628 aa21.73■■□□□ 1.07
GPNMB-203ENST00000409458 SHROOM2Q13796 1616 aa21.7■■□□□ 1.06
GPNMB-203ENST00000409458 ATP1B4Q9UN42 357 aaPredicted RBP21.7■■□□□ 1.06
GPNMB-203ENST00000409458 HECW1Q76N89 1606 aa21.7■■□□□ 1.06
GPNMB-203ENST00000409458 CARMIL2Q6F5E8 1435 aa21.69■■□□□ 1.06
GPNMB-203ENST00000409458 CLASP1Q7Z460 1538 aa21.69■■□□□ 1.06
GPNMB-203ENST00000409458 LRRC9Q6ZRR7 1453 aa21.69■■□□□ 1.06
GPNMB-203ENST00000409458 PRG4Q92954 1404 aaPredicted RBP21.64■■□□□ 1.06
GPNMB-203ENST00000409458 RAPGEF6Q8TEU7 1601 aa21.64■■□□□ 1.05
GPNMB-203ENST00000409458 CCDC18Q5T9S5 1454 aa21.62■■□□□ 1.05
GPNMB-203ENST00000409458 EPRSP07814 1512 aaKnown RBP21.59■■□□□ 1.05
GPNMB-203ENST00000409458 ERCC6L2Q5T890 1561 aa21.57■■□□□ 1.04
GPNMB-203ENST00000409458 NUP153P49790 1475 aaKnown RBP21.57■■□□□ 1.04
GPNMB-203ENST00000409458 PLB1Q6P1J6 1458 aa21.57■■□□□ 1.04
GPNMB-203ENST00000409458 CDK13Q14004 1512 aaKnown RBP21.57■■□□□ 1.04
GPNMB-203ENST00000409458 MAGI3Q5TCQ9 1506 aa21.55■■□□□ 1.04
GPNMB-203ENST00000409458 EHBP1L1Q8N3D4 1523 aa21.54■■□□□ 1.04
GPNMB-203ENST00000409458 ABCA8O94911 1581 aa21.54■■□□□ 1.04
GPNMB-203ENST00000409458 RRBP1Q9P2E9 1410 aaKnown RBP21.51■■□□□ 1.03
GPNMB-203ENST00000409458 MTUS2Q5JR59 1369 aa21.51■■□□□ 1.03
GPNMB-203ENST00000409458 PHLDB1Q86UU1 1377 aa21.49■■□□□ 1.03
GPNMB-203ENST00000409458 ARID3CA6NKF2 412 aa21.49■■□□□ 1.03
GPNMB-203ENST00000409458 PTPRGP23470 1445 aa21.48■■□□□ 1.03
GPNMB-203ENST00000409458 SUPT6HQ7KZ85 1726 aaKnown RBP21.48■■□□□ 1.03
GPNMB-203ENST00000409458 NCOA2Q15596 1464 aa21.43■■□□□ 1.02
GPNMB-203ENST00000409458 CCNB3Q8WWL7 1395 aa21.43■■□□□ 1.02
GPNMB-203ENST00000409458 ARHGEF11O15085 1522 aa21.42■■□□□ 1.02
GPNMB-203ENST00000409458 OSCARQ8IYS5 282 aa21.39■■□□□ 1.01
GPNMB-203ENST00000409458 UACAQ9BZF9 1416 aa21.38■■□□□ 1.01
GPNMB-203ENST00000409458 ATP10BO94823 1461 aa21.36■■□□□ 1.01
GPNMB-203ENST00000409458 HNRNPUL2Q1KMD3 747 aaKnown RBP21.35■■□□□ 1.01
GPNMB-203ENST00000409458 ABCC2Q92887 1545 aa21.35■■□□□ 1.01
GPNMB-203ENST00000409458 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
GPNMB-203ENST00000409458 MYOM3Q5VTT5 1437 aa21.34■■□□□ 1.01
GPNMB-203ENST00000409458 FGD6Q6ZV73 1430 aa21.34■■□□□ 1.01
GPNMB-203ENST00000409458 TROQ12816 1431 aaPredicted RBP21.33■■□□□ 1.01
GPNMB-203ENST00000409458 ADCY10Q96PN6 1610 aa21.32■■□□□ 1
GPNMB-203ENST00000409458 CDK11AQ9UQ88 783 aaPredicted RBP21.31■■□□□ 1
GPNMB-203ENST00000409458 KIF14Q15058 1648 aa21.29■■□□□ 1
GPNMB-203ENST00000409458 UHRF1BP1LA0JNW5 1464 aa21.28■■□□□ 1
GPNMB-203ENST00000409458 HRCP23327 699 aa21.27■■□□□ 1
GPNMB-203ENST00000409458 PTPN23Q9H3S7 1636 aa21.26■□□□□ 0.99
GPNMB-203ENST00000409458 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.26■□□□□ 0.99
GPNMB-203ENST00000409458 FAM50AQ14320 339 aaKnown RBP21.25■□□□□ 0.99
GPNMB-203ENST00000409458 ZCCHC11Q5TAX3 1644 aaKnown RBP21.24■□□□□ 0.99
GPNMB-203ENST00000409458 TCOF1Q13428 1488 aaKnown RBP21.21■□□□□ 0.99
GPNMB-203ENST00000409458 ITGAEP38570 1179 aa21.21■□□□□ 0.99
GPNMB-203ENST00000409458 MIA2Q96PC5 1412 aa21.2■□□□□ 0.98
GPNMB-203ENST00000409458 PLEKHD1A6NEE1 506 aa21.2■□□□□ 0.98
GPNMB-203ENST00000409458 KDM5BQ9UGL1 1544 aa21.2■□□□□ 0.98
GPNMB-203ENST00000409458 ITSN2Q9NZM3 1697 aa21.2■□□□□ 0.98
GPNMB-203ENST00000409458 AEBP2Q6ZN18 517 aaPredicted RBP21.18■□□□□ 0.98
GPNMB-203ENST00000409458 ABCC10Q5T3U5 1492 aa21.17■□□□□ 0.98
GPNMB-203ENST00000409458 CDC42BPAQ5VT25 1732 aa21.15■□□□□ 0.98
GPNMB-203ENST00000409458 GPATCH8Q9UKJ3 1502 aaKnown RBP21.15■□□□□ 0.98
GPNMB-203ENST00000409458 PTPRKQ15262 1439 aa21.11■□□□□ 0.97
GPNMB-203ENST00000409458 TTC37Q6PGP7 1564 aa21.09■□□□□ 0.97
GPNMB-203ENST00000409458 CCER1Q8TC90 406 aaPredicted RBP21.09■□□□□ 0.97
GPNMB-203ENST00000409458 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.07■□□□□ 0.96
GPNMB-203ENST00000409458 CAMSAP2Q08AD1 1489 aa21.07■□□□□ 0.96
GPNMB-203ENST00000409458 PREX2Q70Z35 1606 aa21.06■□□□□ 0.96
GPNMB-203ENST00000409458 DNMT1P26358 1616 aaKnown RBP21.05■□□□□ 0.96
GPNMB-203ENST00000409458 RIMBP3CA6NJZ7 1639 aa21.04■□□□□ 0.96
GPNMB-203ENST00000409458 RIMBP3BA6NNM3 1639 aa21.04■□□□□ 0.96
GPNMB-203ENST00000409458 RIMBP3Q9UFD9 1639 aa21.04■□□□□ 0.96
GPNMB-203ENST00000409458 CFDP1Q9UEE9 299 aaPredicted RBP21.04■□□□□ 0.96
GPNMB-203ENST00000409458 ZNF644Q9H582 1327 aaPredicted RBP21.04■□□□□ 0.96
GPNMB-203ENST00000409458 CDC42BPBQ9Y5S2 1711 aa21.04■□□□□ 0.96
GPNMB-203ENST00000409458 SETD5Q9C0A6 1442 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms