RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ARID4BQ4LE39 1312 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-203ENST00000409050 NRDCO43847 1150 aa7.99□□□□□ -1.13
SCN1A-203ENST00000409050 GOLGA6L6A8MZA4 724 aa7.98□□□□□ -1.13
SCN1A-203ENST00000409050 PNNQ9H307 717 aaKnown RBP7.98□□□□□ -1.13
SCN1A-203ENST00000409050 CLIP1P30622 1438 aa7.98□□□□□ -1.13
SCN1A-203ENST00000409050 FBLN2P98095 1184 aa7.98□□□□□ -1.13
SCN1A-203ENST00000409050 ZNF777Q9ULD5 760 aaPredicted RBP7.98□□□□□ -1.13
SCN1A-203ENST00000409050 HAP1P54257 671 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-203ENST00000409050 PABPN1Q86U42 306 aaKnown RBP eCLIP7.97□□□□□ -1.13
SCN1A-203ENST00000409050 DDX10Q13206 875 aaKnown RBP7.97□□□□□ -1.13
SCN1A-203ENST00000409050 ZRSR1Q15695 479 aaKnown RBP7.96□□□□□ -1.13
SCN1A-203ENST00000409050 FAM9BQ8IZU0 186 aa7.96□□□□□ -1.13
SCN1A-203ENST00000409050 L1TD1Q5T7N2 865 aaKnown RBP7.95□□□□□ -1.14
SCN1A-203ENST00000409050 SCRIBQ14160 1630 aa7.95□□□□□ -1.14
SCN1A-203ENST00000409050 TNIKQ9UKE5 1360 aa7.94□□□□□ -1.14
SCN1A-203ENST00000409050 PPP4R2Q9NY27 417 aa7.93□□□□□ -1.14
SCN1A-203ENST00000409050 CEP164Q9UPV0 1460 aa7.93□□□□□ -1.14
SCN1A-203ENST00000409050 CHMP4AQ9BY43 222 aa7.92□□□□□ -1.14
SCN1A-203ENST00000409050 NUDCQ9Y266 331 aa7.92□□□□□ -1.14
SCN1A-203ENST00000409050 CCER2I3L3R5 266 aa7.9□□□□□ -1.14
SCN1A-203ENST00000409050 P3H3Q8IVL6 736 aa7.9□□□□□ -1.14
SCN1A-203ENST00000409050 FHAD1B1AJZ9 1412 aa7.9□□□□□ -1.14
SCN1A-203ENST00000409050 CHGAP10645 457 aaKnown RBP7.9□□□□□ -1.15
SCN1A-203ENST00000409050 PTMAP06454 111 aaKnown RBP7.89□□□□□ -1.15
SCN1A-203ENST00000409050 RB1CC1Q8TDY2 1594 aa7.89□□□□□ -1.15
SCN1A-203ENST00000409050 KIF27Q86VH2 1401 aa7.89□□□□□ -1.15
SCN1A-203ENST00000409050 KNSTRNQ9Y448 316 aa7.88□□□□□ -1.15
SCN1A-203ENST00000409050 CHAF1AQ13111 956 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-203ENST00000409050 PLEKHD1A6NEE1 506 aa7.88□□□□□ -1.15
SCN1A-203ENST00000409050 USP35Q9P2H5 1018 aa7.88□□□□□ -1.15
SCN1A-203ENST00000409050 CEP162Q5TB80 1403 aa7.87□□□□□ -1.15
SCN1A-203ENST00000409050 NACADO15069 1562 aa7.87□□□□□ -1.15
SCN1A-203ENST00000409050 NBR1Q14596 966 aa7.85□□□□□ -1.15
SCN1A-203ENST00000409050 MAPK8IP3Q9UPT6 1336 aa7.85□□□□□ -1.15
SCN1A-203ENST00000409050 FTSJ3Q8IY81 847 aaKnown RBP7.85□□□□□ -1.15
SCN1A-203ENST00000409050 MCCP23508 829 aa7.85□□□□□ -1.15
SCN1A-203ENST00000409050 NOP58Q9Y2X3 529 aaKnown RBP7.84□□□□□ -1.15
SCN1A-203ENST00000409050 HDGFP51858 240 aaKnown RBP7.84□□□□□ -1.15
SCN1A-203ENST00000409050 WRNQ14191 1432 aaPredicted RBP eCLIP7.84□□□□□ -1.15
SCN1A-203ENST00000409050 HTATSF1O43719 755 aaKnown RBP7.83□□□□□ -1.16
SCN1A-203ENST00000409050 MIER1Q8N108 512 aa7.83□□□□□ -1.16
SCN1A-203ENST00000409050 CALD1Q05682 793 aaKnown RBP7.83□□□□□ -1.16
SCN1A-203ENST00000409050 HDAC5Q9UQL6 1122 aa7.83□□□□□ -1.16
SCN1A-203ENST00000409050 DNTTIP2Q5QJE6 756 aaKnown RBP7.83□□□□□ -1.16
SCN1A-203ENST00000409050 BCL11AQ9H165 835 aa7.83□□□□□ -1.16
SCN1A-203ENST00000409050 CHMP7Q8WUX9 453 aaPredicted RBP7.82□□□□□ -1.16
SCN1A-203ENST00000409050 HSCBQ8IWL3 235 aa7.81□□□□□ -1.16
SCN1A-203ENST00000409050 KANK1Q14678 1352 aa7.81□□□□□ -1.16
SCN1A-203ENST00000409050 PPP1R15AO75807 674 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-203ENST00000409050 CHMP4CQ96CF2 233 aa7.8□□□□□ -1.16
SCN1A-203ENST00000409050 PHLDB1Q86UU1 1377 aa7.8□□□□□ -1.16
SCN1A-203ENST00000409050 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.8□□□□□ -1.161e-6■■■□□ 16.7
SCN1A-203ENST00000409050 SCAF1Q9H7N4 1312 aaKnown RBP7.8□□□□□ -1.16
SCN1A-203ENST00000409050 TMF1P82094 1093 aa7.79□□□□□ -1.16
SCN1A-203ENST00000409050 SYAP1Q96A49 352 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-203ENST00000409050 CARD11Q9BXL7 1154 aa7.79□□□□□ -1.16
SCN1A-203ENST00000409050 IPO8O15397 1037 aaKnown RBP7.79□□□□□ -1.16
SCN1A-203ENST00000409050 HSP90AB1P08238 724 aaKnown RBP7.79□□□□□ -1.16
SCN1A-203ENST00000409050 CCDC34Q96HJ3 373 aa7.79□□□□□ -1.16
SCN1A-203ENST00000409050 GBP4Q96PP9 640 aa7.79□□□□□ -1.16
SCN1A-203ENST00000409050 CHIC2Q9UKJ5 165 aa7.79□□□□□ -1.16
SCN1A-203ENST00000409050 MSNP26038 577 aaKnown RBP7.79□□□□□ -1.16
SCN1A-203ENST00000409050 CFDP1Q9UEE9 299 aaPredicted RBP7.78□□□□□ -1.16
SCN1A-203ENST00000409050 TCERG1O14776 1098 aaKnown RBP7.78□□□□□ -1.16
SCN1A-203ENST00000409050 CSPP1Q1MSJ5 1256 aa7.78□□□□□ -1.16
SCN1A-203ENST00000409050 GOLGA6L4A6NEF3 574 aa7.77□□□□□ -1.16
SCN1A-203ENST00000409050 KDM2AQ9Y2K7 1162 aa7.77□□□□□ -1.16
SCN1A-203ENST00000409050 BAZ1AQ9NRL2 1556 aaPredicted RBP7.77□□□□□ -1.16
SCN1A-203ENST00000409050 ROCK2O75116 1388 aaKnown RBP7.77□□□□□ -1.16
SCN1A-203ENST00000409050 PDE3BQ13370 1112 aa7.77□□□□□ -1.17
SCN1A-203ENST00000409050 NAP1L5Q96NT1 182 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-203ENST00000409050 RALBP1Q15311 655 aa7.77□□□□□ -1.17
SCN1A-203ENST00000409050 CCNB3Q8WWL7 1395 aa7.77□□□□□ -1.17
SCN1A-203ENST00000409050 BAZ1BQ9UIG0 1483 aaKnown RBP7.76□□□□□ -1.17
SCN1A-203ENST00000409050 ARID3CA6NKF2 412 aa7.75□□□□□ -1.17
SCN1A-203ENST00000409050 SALL2Q9Y467 1007 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-203ENST00000409050 NGEFQ8N5V2 710 aa7.75□□□□□ -1.17
SCN1A-203ENST00000409050 KIAA2012Q0VF49 1180 aa7.75□□□□□ -1.17
SCN1A-203ENST00000409050 TPM4P67936 248 aa7.74□□□□□ -1.17
SCN1A-203ENST00000409050 EIF3AQ14152 1382 aaKnown RBP7.74□□□□□ -1.17
SCN1A-203ENST00000409050 PMFBP1Q8TBY8 1022 aa7.73□□□□□ -1.17
SCN1A-203ENST00000409050 KTN1Q86UP2 1357 aaKnown RBP7.73□□□□□ -1.17
SCN1A-203ENST00000409050 SUPT16HQ9Y5B9 1047 aaKnown RBP7.73□□□□□ -1.17
SCN1A-203ENST00000409050 SETD5Q9C0A6 1442 aa7.73□□□□□ -1.17
SCN1A-203ENST00000409050 RWDD1Q9H446 243 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-203ENST00000409050 FGD1P98174 961 aa7.73□□□□□ -1.17
SCN1A-203ENST00000409050 RRP7BPQ9NSQ0 103 aa7.72□□□□□ -1.17
SCN1A-203ENST00000409050 RSPH4AQ5TD94 716 aa7.72□□□□□ -1.17
SCN1A-203ENST00000409050 PHF14O94880 888 aa7.71□□□□□ -1.17
SCN1A-203ENST00000409050 KCNJ4P48050 445 aa7.71□□□□□ -1.18
SCN1A-203ENST00000409050 KIF3AQ9Y496 699 aa7.71□□□□□ -1.18
SCN1A-203ENST00000409050 VPS8Q8N3P4 1428 aa7.71□□□□□ -1.18
SCN1A-203ENST00000409050 ARHGAP35Q9NRY4 1499 aa7.7□□□□□ -1.18
SCN1A-203ENST00000409050 POGKQ9P215 609 aa7.7□□□□□ -1.18
SCN1A-203ENST00000409050 FMN1Q68DA7 1419 aa7.7□□□□□ -1.18
SCN1A-203ENST00000409050 OS9Q13438 667 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-203ENST00000409050 KIAA1211Q6ZU35 1233 aa7.69□□□□□ -1.18
SCN1A-203ENST00000409050 LMOD3Q0VAK6 560 aa7.69□□□□□ -1.18
SCN1A-203ENST00000409050 AAMPQ13685 434 aa7.69□□□□□ -1.18
SCN1A-203ENST00000409050 ARXQ96QS3 562 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms