RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CEP170Q5SW79 1584 aa29.11■■■□□ 2.25
SDC1-203ENST00000403076 RANGAP1P46060 587 aaPredicted RBP29.1■■■□□ 2.25
SDC1-203ENST00000403076 OSCARQ8IYS5 282 aa29.08■■■□□ 2.25
SDC1-203ENST00000403076 CTTNBP2Q8WZ74 1663 aa29.08■■■□□ 2.25
SDC1-203ENST00000403076 KIAA0586Q9BVV6 1533 aa29.07■■■□□ 2.24
SDC1-203ENST00000403076 IQGAP2Q13576 1575 aa29■■■□□ 2.23
SDC1-203ENST00000403076 JPH4Q96JJ6 628 aa28.94■■■□□ 2.22
SDC1-203ENST00000403076 CEP162Q5TB80 1403 aa28.93■■■□□ 2.22
SDC1-203ENST00000403076 CLASP1Q7Z460 1538 aa28.91■■■□□ 2.22
SDC1-203ENST00000403076 CLIP1P30622 1438 aa28.91■■■□□ 2.22
SDC1-203ENST00000403076 UGGT2Q9NYU1 1516 aa28.85■■■□□ 2.21
SDC1-203ENST00000403076 P3H3Q8IVL6 736 aa28.84■■■□□ 2.21
SDC1-203ENST00000403076 PRG4Q92954 1404 aaPredicted RBP28.8■■■□□ 2.2
SDC1-203ENST00000403076 CARMIL2Q6F5E8 1435 aa28.79■■■□□ 2.2
SDC1-203ENST00000403076 ARHGAP35Q9NRY4 1499 aa28.78■■■□□ 2.2
SDC1-203ENST00000403076 SHROOM2Q13796 1616 aa28.77■■■□□ 2.2
SDC1-203ENST00000403076 EFCAB5A4FU69 1503 aa28.77■■■□□ 2.2
SDC1-203ENST00000403076 DNAJC5Q9H3Z4 198 aa28.74■■■□□ 2.19
SDC1-203ENST00000403076 SAMD9Q5K651 1589 aa28.73■■■□□ 2.19
SDC1-203ENST00000403076 DISP1Q96F81 1524 aa28.73■■■□□ 2.19
SDC1-203ENST00000403076 FHOD3Q2V2M9 1422 aa28.7■■■□□ 2.19
SDC1-203ENST00000403076 KIAA0556O60303 1618 aa28.7■■■□□ 2.18
SDC1-203ENST00000403076 TTBK1Q5TCY1 1321 aaPredicted RBP28.7■■■□□ 2.18
SDC1-203ENST00000403076 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
SDC1-203ENST00000403076 ERCC6L2Q5T890 1561 aa28.63■■■□□ 2.17
SDC1-203ENST00000403076 PTPRGP23470 1445 aa28.57■■■□□ 2.16
SDC1-203ENST00000403076 FMN1Q68DA7 1419 aa28.56■■■□□ 2.16
SDC1-203ENST00000403076 VPS8Q8N3P4 1428 aa28.52■■■□□ 2.16
SDC1-203ENST00000403076 ARHGEF11O15085 1522 aa28.52■■■□□ 2.16
SDC1-203ENST00000403076 ATP1B4Q9UN42 357 aaPredicted RBP28.5■■■□□ 2.15
SDC1-203ENST00000403076 RIMBP3CA6NJZ7 1639 aa28.42■■■□□ 2.14
SDC1-203ENST00000403076 RIMBP3BA6NNM3 1639 aa28.42■■■□□ 2.14
SDC1-203ENST00000403076 RIMBP3Q9UFD9 1639 aa28.42■■■□□ 2.14
SDC1-203ENST00000403076 CASKIN1Q8WXD9 1431 aa28.4■■■□□ 2.14
SDC1-203ENST00000403076 PLB1Q6P1J6 1458 aa28.39■■■□□ 2.14
SDC1-203ENST00000403076 PCF11O94913 1555 aaKnown RBP28.37■■■□□ 2.13
SDC1-203ENST00000403076 APLP2Q06481 763 aa28.37■■■□□ 2.13
SDC1-203ENST00000403076 UACAQ9BZF9 1416 aa28.36■■■□□ 2.13
SDC1-203ENST00000403076 RAPGEF6Q8TEU7 1601 aa28.35■■■□□ 2.13
SDC1-203ENST00000403076 FYCO1Q9BQS8 1478 aa28.35■■■□□ 2.13
SDC1-203ENST00000403076 CYB5RLQ6IPT4 315 aa28.34■■■□□ 2.13
SDC1-203ENST00000403076 ABCA8O94911 1581 aa28.33■■■□□ 2.13
SDC1-203ENST00000403076 ARID3CA6NKF2 412 aa28.32■■■□□ 2.12
SDC1-203ENST00000403076 HECW1Q76N89 1606 aa28.31■■■□□ 2.12
SDC1-203ENST00000403076 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.27■■■□□ 2.12
SDC1-203ENST00000403076 HNRNPUL2Q1KMD3 747 aaKnown RBP28.27■■■□□ 2.12
SDC1-203ENST00000403076 ABCC2Q92887 1545 aa28.26■■■□□ 2.11
SDC1-203ENST00000403076 NUP153P49790 1475 aaKnown RBP28.26■■■□□ 2.11
SDC1-203ENST00000403076 UHRF1BP1LA0JNW5 1464 aa28.24■■■□□ 2.11
SDC1-203ENST00000403076 EPRSP07814 1512 aaKnown RBP28.21■■■□□ 2.11
SDC1-203ENST00000403076 CCDC18Q5T9S5 1454 aa28.2■■■□□ 2.1
SDC1-203ENST00000403076 NPM1P06748 294 aaKnown RBP eCLIP28.18■■■□□ 2.1
SDC1-203ENST00000403076 ADCY10Q96PN6 1610 aa28.17■■■□□ 2.1
SDC1-203ENST00000403076 CDK13Q14004 1512 aaKnown RBP28.17■■■□□ 2.1
SDC1-203ENST00000403076 ATP10BO94823 1461 aa28.16■■■□□ 2.1
SDC1-203ENST00000403076 LRRIQ1Q96JM4 1722 aa28.14■■■□□ 2.1
SDC1-203ENST00000403076 TIAM1Q13009 1591 aa28.14■■■□□ 2.09
SDC1-203ENST00000403076 PPARGC1BQ86YN6 1023 aaKnown RBP28.13■■■□□ 2.09
SDC1-203ENST00000403076 CDK11AQ9UQ88 783 aaPredicted RBP28.13■■■□□ 2.09
SDC1-203ENST00000403076 MAP3K1Q13233 1512 aa28.11■■■□□ 2.09
SDC1-203ENST00000403076 KDM5BQ9UGL1 1544 aa28.11■■■□□ 2.09
SDC1-203ENST00000403076 CFAP43Q8NDM7 1665 aa28.08■■■□□ 2.09
SDC1-203ENST00000403076 KANK4Q5T7N3 995 aaPredicted RBP28.08■■■□□ 2.09
SDC1-203ENST00000403076 PLEKHD1A6NEE1 506 aa28.08■■■□□ 2.08
SDC1-203ENST00000403076 MTUS2Q5JR59 1369 aa28.06■■■□□ 2.08
SDC1-203ENST00000403076 ZCCHC11Q5TAX3 1644 aaKnown RBP28.06■■■□□ 2.08
SDC1-203ENST00000403076 LRRC9Q6ZRR7 1453 aa28.02■■■□□ 2.08
SDC1-203ENST00000403076 TROQ12816 1431 aaPredicted RBP27.96■■■□□ 2.07
SDC1-203ENST00000403076 MAGI3Q5TCQ9 1506 aa27.95■■■□□ 2.07
SDC1-203ENST00000403076 EHBP1L1Q8N3D4 1523 aa27.95■■■□□ 2.06
SDC1-203ENST00000403076 KCNH8Q96L42 1107 aa27.93■■■□□ 2.06
SDC1-203ENST00000403076 ASXL2Q76L83 1435 aa27.93■■■□□ 2.06
SDC1-203ENST00000403076 WDR7Q9Y4E6 1490 aa27.88■■■□□ 2.05
SDC1-203ENST00000403076 SUPT6HQ7KZ85 1726 aaKnown RBP27.85■■■□□ 2.05
SDC1-203ENST00000403076 MAPKBP1O60336 1514 aa27.83■■■□□ 2.05
SDC1-203ENST00000403076 KIF14Q15058 1648 aa27.82■■■□□ 2.04
SDC1-203ENST00000403076 NCOA2Q15596 1464 aa27.82■■■□□ 2.04
SDC1-203ENST00000403076 CCNB3Q8WWL7 1395 aa27.75■■■□□ 2.03
SDC1-203ENST00000403076 PHLDB1Q86UU1 1377 aa27.72■■■□□ 2.03
SDC1-203ENST00000403076 ABCC10Q5T3U5 1492 aa27.71■■■□□ 2.03
SDC1-203ENST00000403076 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.7■■■□□ 2.03
SDC1-203ENST00000403076 FAM69CQ0P6D2 419 aa27.68■■■□□ 2.02
SDC1-203ENST00000403076 MYOM3Q5VTT5 1437 aa27.67■■■□□ 2.02
SDC1-203ENST00000403076 TTC37Q6PGP7 1564 aa27.66■■■□□ 2.02
SDC1-203ENST00000403076 CFDP1Q9UEE9 299 aaPredicted RBP27.64■■■□□ 2.02
SDC1-203ENST00000403076 GPATCH8Q9UKJ3 1502 aaKnown RBP27.64■■■□□ 2.02
SDC1-203ENST00000403076 ABCA9Q8IUA7 1624 aa27.63■■■□□ 2.01
SDC1-203ENST00000403076 DIP2BQ9P265 1576 aa27.6■■■□□ 2.01
SDC1-203ENST00000403076 CD109Q6YHK3 1445 aa27.6■■■□□ 2.01
SDC1-203ENST00000403076 ITSN2Q9NZM3 1697 aa27.59■■■□□ 2.01
SDC1-203ENST00000403076 ZNF777Q9ULD5 760 aaPredicted RBP27.59■■■□□ 2.01
SDC1-203ENST00000403076 FGD6Q6ZV73 1430 aa27.59■■■□□ 2.01
SDC1-203ENST00000403076 GLI2P10070 1586 aa27.59■■■□□ 2.01
SDC1-203ENST00000403076 PLCH2O75038 1416 aa27.57■■■□□ 2
SDC1-203ENST00000403076 CDC42BPAQ5VT25 1732 aa27.57■■■□□ 2
SDC1-203ENST00000403076 MYO5CQ9NQX4 1742 aa27.57■■■□□ 2
SDC1-203ENST00000403076 MIA2Q96PC5 1412 aa27.57■■■□□ 2
SDC1-203ENST00000403076 TRHP20396 242 aaPredicted RBP27.57■■■□□ 2
SDC1-203ENST00000403076 FAM50AQ14320 339 aaKnown RBP27.57■■■□□ 2
SDC1-203ENST00000403076 TRIM26Q12899 539 aaPredicted RBP27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms