RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 GOLGA3Q08378 1498 aa19.52■□□□□ 0.72
PCDHA11-201ENST00000398640 CLIP1P30622 1438 aa19.52■□□□□ 0.72
PCDHA11-201ENST00000398640 CCDC88BA6NC98 1476 aa19.52■□□□□ 0.72
PCDHA11-201ENST00000398640 ATAD2BQ9ULI0 1458 aa19.49■□□□□ 0.71
PCDHA11-201ENST00000398640 PPP1R15AO75807 674 aaPredicted RBP19.49■□□□□ 0.71
PCDHA11-201ENST00000398640 ZBTB7CA1YPR0 619 aa19.48■□□□□ 0.71
PCDHA11-201ENST00000398640 CARMIL1Q5VZK9 1371 aa19.46■□□□□ 0.71
PCDHA11-201ENST00000398640 TOP2AP11388 1531 aaKnown RBP19.44■□□□□ 0.7
PCDHA11-201ENST00000398640 CARMIL2Q6F5E8 1435 aa19.44■□□□□ 0.7
PCDHA11-201ENST00000398640 NPM2Q86SE8 214 aaKnown RBP19.44■□□□□ 0.7
PCDHA11-201ENST00000398640 TDRD9Q8NDG6 1382 aaKnown RBP19.43■□□□□ 0.7
PCDHA11-201ENST00000398640 CFDP1Q9UEE9 299 aaPredicted RBP19.43■□□□□ 0.7
PCDHA11-201ENST00000398640 SMARCA4P51532 1647 aa19.42■□□□□ 0.7
PCDHA11-201ENST00000398640 C14orf37Q86TY3 774 aa19.42■□□□□ 0.7
PCDHA11-201ENST00000398640 WIZO95785 1651 aa19.39■□□□□ 0.7
PCDHA11-201ENST00000398640 FANCD2Q9BXW9 1451 aa19.34■□□□□ 0.69
PCDHA11-201ENST00000398640 OSCARQ8IYS5 282 aa19.33■□□□□ 0.69
PCDHA11-201ENST00000398640 SALL2Q9Y467 1007 aaPredicted RBP19.33■□□□□ 0.68
PCDHA11-201ENST00000398640 TONSLQ96HA7 1378 aa19.3■□□□□ 0.68
PCDHA11-201ENST00000398640 MLECQ14165 292 aa19.29■□□□□ 0.68
PCDHA11-201ENST00000398640 RRP7BPQ9NSQ0 103 aa19.29■□□□□ 0.68
PCDHA11-201ENST00000398640 ANP32AP39687 249 aaKnown RBP19.29■□□□□ 0.68
PCDHA11-201ENST00000398640 KDM2AQ9Y2K7 1162 aa19.28■□□□□ 0.68
PCDHA11-201ENST00000398640 ABCC8Q09428 1581 aa19.27■□□□□ 0.68
PCDHA11-201ENST00000398640 HAP1P54257 671 aaPredicted RBP19.24■□□□□ 0.67
PCDHA11-201ENST00000398640 CCNB3Q8WWL7 1395 aa19.24■□□□□ 0.67
PCDHA11-201ENST00000398640 HSP90AA1P07900 732 aaKnown RBP19.24■□□□□ 0.67
PCDHA11-201ENST00000398640 FAM9BQ8IZU0 186 aa19.23■□□□□ 0.67
PCDHA11-201ENST00000398640 CEP162Q5TB80 1403 aa19.23■□□□□ 0.67
PCDHA11-201ENST00000398640 CYB5RLQ6IPT4 315 aa19.21■□□□□ 0.67
PCDHA11-201ENST00000398640 FHAD1B1AJZ9 1412 aa19.2■□□□□ 0.66
PCDHA11-201ENST00000398640 FKBP8Q14318 412 aa19.2■□□□□ 0.66
PCDHA11-201ENST00000398640 ACIN1Q9UKV3 1341 aaKnown RBP19.19■□□□□ 0.66
PCDHA11-201ENST00000398640 CC2D2AQ9P2K1 1620 aa19.17■□□□□ 0.66
PCDHA11-201ENST00000398640 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
PCDHA11-201ENST00000398640 HNRNPUQ00839 825 aaKnown RBP eCLIP19.15■□□□□ 0.66
PCDHA11-201ENST00000398640 DDX10Q13206 875 aaKnown RBP19.15■□□□□ 0.66
PCDHA11-201ENST00000398640 KANK1Q14678 1352 aa19.14■□□□□ 0.65
PCDHA11-201ENST00000398640 NCAPD3P42695 1498 aa19.13■□□□□ 0.65
PCDHA11-201ENST00000398640 JPH4Q96JJ6 628 aa19.12■□□□□ 0.65
PCDHA11-201ENST00000398640 ARXQ96QS3 562 aa19.11■□□□□ 0.65
PCDHA11-201ENST00000398640 HDGFP51858 240 aaKnown RBP19.09■□□□□ 0.65
PCDHA11-201ENST00000398640 AEBP2Q6ZN18 517 aaPredicted RBP19.09■□□□□ 0.65
PCDHA11-201ENST00000398640 ANP32BQ92688 251 aaKnown RBP19.08■□□□□ 0.65
PCDHA11-201ENST00000398640 UPF2Q9HAU5 1272 aaKnown RBP19.08■□□□□ 0.64
PCDHA11-201ENST00000398640 HIRIP3Q9BW71 556 aaPredicted RBP19.08■□□□□ 0.64
PCDHA11-201ENST00000398640 WDR43Q15061 677 aaKnown RBP eCLIP19.06■□□□□ 0.64
PCDHA11-201ENST00000398640 RGL3Q3MIN7 710 aa19.06■□□□□ 0.64
PCDHA11-201ENST00000398640 EFCAB2Q5VUJ9 269 aa19.06■□□□□ 0.64
PCDHA11-201ENST00000398640 TMC1Q8TDI8 760 aa19.05■□□□□ 0.64
PCDHA11-201ENST00000398640 GGT6Q6P531 493 aa19.03■□□□□ 0.64
PCDHA11-201ENST00000398640 LMOD2Q6P5Q4 547 aa19.03■□□□□ 0.64
PCDHA11-201ENST00000398640 RAPGEF2Q9Y4G8 1499 aa19.02■□□□□ 0.64
PCDHA11-201ENST00000398640 IRX6P78412 446 aaPredicted RBP19.01■□□□□ 0.63
PCDHA11-201ENST00000398640 FMN1Q68DA7 1419 aa18.98■□□□□ 0.63
PCDHA11-201ENST00000398640 SENP3-EIF4A1A0A087X0R7 540 aa18.97■□□□□ 0.63
PCDHA11-201ENST00000398640 MRC2Q9UBG0 1479 aa18.97■□□□□ 0.63
PCDHA11-201ENST00000398640 PTPRGP23470 1445 aa18.96■□□□□ 0.63
PCDHA11-201ENST00000398640 POGKQ9P215 609 aa18.96■□□□□ 0.63
PCDHA11-201ENST00000398640 GAPVD1Q14C86 1478 aa18.95■□□□□ 0.62
PCDHA11-201ENST00000398640 EIF5BO60841 1220 aaKnown RBP18.95■□□□□ 0.62
PCDHA11-201ENST00000398640 NBR1Q14596 966 aa18.95■□□□□ 0.62
PCDHA11-201ENST00000398640 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.94■□□□□ 0.62
PCDHA11-201ENST00000398640 PPM1GO15355 546 aaPredicted RBP18.93■□□□□ 0.62
PCDHA11-201ENST00000398640 CCDC136Q96JN2 1154 aa18.93■□□□□ 0.62
PCDHA11-201ENST00000398640 FGD5Q6ZNL6 1462 aa18.93■□□□□ 0.62
PCDHA11-201ENST00000398640 MRS2Q9HD23 443 aa18.91■□□□□ 0.62
PCDHA11-201ENST00000398640 NPHP1O15259 732 aa18.9■□□□□ 0.62
PCDHA11-201ENST00000398640 RAD54L2Q9Y4B4 1467 aa18.89■□□□□ 0.61
PCDHA11-201ENST00000398640 DNAJC5BQ9UF47 199 aa18.88■□□□□ 0.61
PCDHA11-201ENST00000398640 NESP48681 1621 aa18.88■□□□□ 0.61
PCDHA11-201ENST00000398640 MYH16Q9H6N6 1097 aa18.87■□□□□ 0.61
PCDHA11-201ENST00000398640 FAM69CQ0P6D2 419 aa18.87■□□□□ 0.61
PCDHA11-201ENST00000398640 AQRO60306 1485 aaKnown RBP eCLIP18.87■□□□□ 0.61
PCDHA11-201ENST00000398640 ARHGAP35Q9NRY4 1499 aa18.86■□□□□ 0.61
PCDHA11-201ENST00000398640 TULP1O00294 542 aaPredicted RBP18.84■□□□□ 0.61
PCDHA11-201ENST00000398640 FHOD3Q2V2M9 1422 aa18.83■□□□□ 0.6
PCDHA11-201ENST00000398640 HMGXB3Q12766 1538 aa18.82■□□□□ 0.6
PCDHA11-201ENST00000398640 SPAG9O60271 1321 aaKnown RBP18.82■□□□□ 0.6
PCDHA11-201ENST00000398640 CDCA8Q53HL2 280 aa18.81■□□□□ 0.6
PCDHA11-201ENST00000398640 IFT140Q96RY7 1462 aa18.81■□□□□ 0.6
PCDHA11-201ENST00000398640 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
PCDHA11-201ENST00000398640 CCDC18Q5T9S5 1454 aa18.79■□□□□ 0.6
PCDHA11-201ENST00000398640 KIF3BO15066 747 aa18.78■□□□□ 0.6
PCDHA11-201ENST00000398640 CDK11BP21127 795 aaKnown RBP18.78■□□□□ 0.6
PCDHA11-201ENST00000398640 MIER1Q8N108 512 aa18.78■□□□□ 0.6
PCDHA11-201ENST00000398640 EID1Q9Y6B2 187 aa18.78■□□□□ 0.6
PCDHA11-201ENST00000398640 HNRNPMP52272 730 aaKnown RBP eCLIP18.77■□□□□ 0.6
PCDHA11-201ENST00000398640 EIF4G2P78344 907 aaKnown RBP eCLIP18.76■□□□□ 0.59
PCDHA11-201ENST00000398640 LAS1LQ9Y4W2 734 aaKnown RBP18.75■□□□□ 0.59
PCDHA11-201ENST00000398640 WASHC2CQ9Y4E1 1318 aa18.74■□□□□ 0.59
PCDHA11-201ENST00000398640 CARD11Q9BXL7 1154 aa18.74■□□□□ 0.59
PCDHA11-201ENST00000398640 RSPH4AQ5TD94 716 aa18.73■□□□□ 0.59
PCDHA11-201ENST00000398640 ANKRD30AQ9BXX3 1397 aa18.73■□□□□ 0.59
PCDHA11-201ENST00000398640 CFTRP13569 1480 aa18.72■□□□□ 0.59
PCDHA11-201ENST00000398640 VPS8Q8N3P4 1428 aa18.71■□□□□ 0.59
PCDHA11-201ENST00000398640 TAOK2Q9UL54 1235 aa18.7■□□□□ 0.58
PCDHA11-201ENST00000398640 SOX12O15370 315 aa18.7■□□□□ 0.58
PCDHA11-201ENST00000398640 TNNT2P45379 298 aaPredicted RBP18.69■□□□□ 0.58
PCDHA11-201ENST00000398640 TPRNQ4KMQ1 711 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms