RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 TARBP1Q13395 1621 aaKnown RBP25.21■■□□□ 1.63
NUP50-202ENST00000396096 GAPVD1Q14C86 1478 aa25.2■■□□□ 1.63
NUP50-202ENST00000396096 CFAP43Q8NDM7 1665 aa25.2■■□□□ 1.62
NUP50-202ENST00000396096 PCF11O94913 1555 aaKnown RBP25.17■■□□□ 1.62
NUP50-202ENST00000396096 AQRO60306 1485 aaKnown RBP eCLIP25.15■■□□□ 1.626e-6■□□□□ 8.5
NUP50-202ENST00000396096 TDRD9Q8NDG6 1382 aaKnown RBP25.15■■□□□ 1.62
NUP50-202ENST00000396096 LRRC9Q6ZRR7 1453 aa25.13■■□□□ 1.61
NUP50-202ENST00000396096 CCNB3Q8WWL7 1395 aa25.13■■□□□ 1.61
NUP50-202ENST00000396096 FYCO1Q9BQS8 1478 aa25.12■■□□□ 1.61
NUP50-202ENST00000396096 MRC2Q9UBG0 1479 aa25.09■■□□□ 1.61
NUP50-202ENST00000396096 CASKIN1Q8WXD9 1431 aa25.09■■□□□ 1.61
NUP50-202ENST00000396096 SAMD9Q5K651 1589 aa25.08■■□□□ 1.61
NUP50-202ENST00000396096 FHOD3Q2V2M9 1422 aa25.08■■□□□ 1.61
NUP50-202ENST00000396096 CLSPNQ9HAW4 1339 aa25.06■■□□□ 1.6
NUP50-202ENST00000396096 PBRM1Q86U86 1689 aa25.05■■□□□ 1.6
NUP50-202ENST00000396096 FMN1Q68DA7 1419 aa25.02■■□□□ 1.6
NUP50-202ENST00000396096 DHX57Q6P158 1386 aaKnown RBP24.99■■□□□ 1.59
NUP50-202ENST00000396096 P3H3Q8IVL6 736 aa24.99■■□□□ 1.59
NUP50-202ENST00000396096 SNAPC4Q5SXM2 1469 aa24.98■■□□□ 1.59
NUP50-202ENST00000396096 WDR62O43379 1518 aa24.96■■□□□ 1.59
NUP50-202ENST00000396096 ADAMTS12P58397 1594 aa24.95■■□□□ 1.58
NUP50-202ENST00000396096 PHLDB1Q86UU1 1377 aa24.94■■□□□ 1.58
NUP50-202ENST00000396096 THOC2Q8NI27 1593 aaKnown RBP24.92■■□□□ 1.58
NUP50-202ENST00000396096 IFT140Q96RY7 1462 aa24.91■■□□□ 1.58
NUP50-202ENST00000396096 ZNF316A6NFI3 1004 aaPredicted RBP24.91■■□□□ 1.58
NUP50-202ENST00000396096 GRIN2BQ13224 1484 aa24.89■■□□□ 1.57
NUP50-202ENST00000396096 DIEXFQ68CQ4 756 aaKnown RBP24.88■■□□□ 1.57
NUP50-202ENST00000396096 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.86■■□□□ 1.57
NUP50-202ENST00000396096 LRRIQ1Q96JM4 1722 aa24.85■■□□□ 1.57
NUP50-202ENST00000396096 IQGAP2Q13576 1575 aa24.83■■□□□ 1.56
NUP50-202ENST00000396096 ATP1B4Q9UN42 357 aaPredicted RBP24.8■■□□□ 1.56
NUP50-202ENST00000396096 RAB3GAP2Q9H2M9 1393 aa24.77■■□□□ 1.56
NUP50-202ENST00000396096 SETD5Q9C0A6 1442 aa24.77■■□□□ 1.56
NUP50-202ENST00000396096 ZNF608Q9ULD9 1512 aaPredicted RBP24.76■■□□□ 1.55
NUP50-202ENST00000396096 ITGAEP38570 1179 aa24.74■■□□□ 1.55
NUP50-202ENST00000396096 UGGT2Q9NYU1 1516 aa24.73■■□□□ 1.55
NUP50-202ENST00000396096 EHBP1L1Q8N3D4 1523 aa24.73■■□□□ 1.55
NUP50-202ENST00000396096 FGD6Q6ZV73 1430 aa24.72■■□□□ 1.55
NUP50-202ENST00000396096 CCDC18Q5T9S5 1454 aa24.72■■□□□ 1.55
NUP50-202ENST00000396096 MTUS2Q5JR59 1369 aa24.71■■□□□ 1.55
NUP50-202ENST00000396096 HECW1Q76N89 1606 aa24.71■■□□□ 1.55
NUP50-202ENST00000396096 EIF4G3O43432 1585 aaKnown RBP24.71■■□□□ 1.55
NUP50-202ENST00000396096 SUPT6HQ7KZ85 1726 aaKnown RBP24.7■■□□□ 1.55
NUP50-202ENST00000396096 FAM50AQ14320 339 aaKnown RBP24.7■■□□□ 1.54
NUP50-202ENST00000396096 MAPKBP1O60336 1514 aa24.67■■□□□ 1.54
NUP50-202ENST00000396096 ERCC6Q03468 1493 aa24.66■■□□□ 1.54
NUP50-202ENST00000396096 NCOA2Q15596 1464 aa24.66■■□□□ 1.54
NUP50-202ENST00000396096 ARHGEF11O15085 1522 aa24.66■■□□□ 1.54
NUP50-202ENST00000396096 KIAA0586Q9BVV6 1533 aa24.65■■□□□ 1.54
NUP50-202ENST00000396096 MYOM3Q5VTT5 1437 aa24.63■■□□□ 1.53
NUP50-202ENST00000396096 GRIN2AQ12879 1464 aa24.61■■□□□ 1.53
NUP50-202ENST00000396096 MAGI3Q5TCQ9 1506 aa24.61■■□□□ 1.53
NUP50-202ENST00000396096 MAGI1Q96QZ7 1491 aaPredicted RBP24.6■■□□□ 1.53
NUP50-202ENST00000396096 EPRSP07814 1512 aaKnown RBP24.58■■□□□ 1.53
NUP50-202ENST00000396096 KIAA0556O60303 1618 aa24.58■■□□□ 1.53
NUP50-202ENST00000396096 DISP1Q96F81 1524 aa24.55■■□□□ 1.52
NUP50-202ENST00000396096 PTPN23Q9H3S7 1636 aa24.53■■□□□ 1.52
NUP50-202ENST00000396096 TCOF1Q13428 1488 aaKnown RBP24.52■■□□□ 1.52
NUP50-202ENST00000396096 HFM1A2PYH4 1435 aa24.51■■□□□ 1.51
NUP50-202ENST00000396096 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
NUP50-202ENST00000396096 PTPRKQ15262 1439 aa24.48■■□□□ 1.51
NUP50-202ENST00000396096 CDK13Q14004 1512 aaKnown RBP24.47■■□□□ 1.51
NUP50-202ENST00000396096 CEP170Q5SW79 1584 aa24.45■■□□□ 1.5
NUP50-202ENST00000396096 RAPGEF6Q8TEU7 1601 aa24.44■■□□□ 1.5
NUP50-202ENST00000396096 MIA2Q96PC5 1412 aa24.43■■□□□ 1.5
NUP50-202ENST00000396096 TIMELESSQ9UNS1 1208 aa24.42■■□□□ 1.5
NUP50-202ENST00000396096 NAIPQ13075 1403 aa24.4■■□□□ 1.5
NUP50-202ENST00000396096 ACIN1Q9UKV3 1341 aaKnown RBP24.4■■□□□ 1.5
NUP50-202ENST00000396096 NUP160Q12769 1436 aa24.4■■□□□ 1.5
NUP50-202ENST00000396096 NUP153P49790 1475 aaKnown RBP24.39■■□□□ 1.5
NUP50-202ENST00000396096 UACAQ9BZF9 1416 aa24.39■■□□□ 1.49
NUP50-202ENST00000396096 CENPBP07199 599 aaPredicted RBP24.38■■□□□ 1.49
NUP50-202ENST00000396096 GCC2Q8IWJ2 1684 aa24.37■■□□□ 1.49
NUP50-202ENST00000396096 AKNAQ7Z591 1439 aa24.37■■□□□ 1.49
NUP50-202ENST00000396096 MIER1Q8N108 512 aa24.37■■□□□ 1.49
NUP50-202ENST00000396096 CHMP7Q8WUX9 453 aaPredicted RBP24.36■■□□□ 1.49
NUP50-202ENST00000396096 SCAF1Q9H7N4 1312 aaKnown RBP24.35■■□□□ 1.49
NUP50-202ENST00000396096 NEUROD1Q13562 356 aa24.32■■□□□ 1.48
NUP50-202ENST00000396096 SIN3AQ96ST3 1273 aa24.3■■□□□ 1.48
NUP50-202ENST00000396096 CARMIL2Q6F5E8 1435 aa24.28■■□□□ 1.48
NUP50-202ENST00000396096 CDK11AQ9UQ88 783 aaPredicted RBP24.24■■□□□ 1.47
NUP50-202ENST00000396096 ADCY10Q96PN6 1610 aa24.23■■□□□ 1.47
NUP50-202ENST00000396096 TROQ12816 1431 aaPredicted RBP24.22■■□□□ 1.47
NUP50-202ENST00000396096 DNMT1P26358 1616 aaKnown RBP24.22■■□□□ 1.47
NUP50-202ENST00000396096 JPH4Q96JJ6 628 aa24.21■■□□□ 1.47
NUP50-202ENST00000396096 PLB1Q6P1J6 1458 aa24.2■■□□□ 1.46
NUP50-202ENST00000396096 ARID3CA6NKF2 412 aa24.19■■□□□ 1.46
NUP50-202ENST00000396096 ITSN2Q9NZM3 1697 aa24.18■■□□□ 1.46
NUP50-202ENST00000396096 ROCK1Q13464 1354 aa24.18■■□□□ 1.46
NUP50-202ENST00000396096 PPP1R15AO75807 674 aaPredicted RBP24.18■■□□□ 1.46
NUP50-202ENST00000396096 FBLN2P98095 1184 aa24.17■■□□□ 1.46
NUP50-202ENST00000396096 DAPK1P53355 1430 aa24.17■■□□□ 1.46
NUP50-202ENST00000396096 ABCA8O94911 1581 aa24.17■■□□□ 1.46
NUP50-202ENST00000396096 KDM6BO15054 1643 aa24.15■■□□□ 1.46
NUP50-202ENST00000396096 RRP7BPQ9NSQ0 103 aa24.14■■□□□ 1.45
NUP50-202ENST00000396096 PRG4Q92954 1404 aaPredicted RBP24.13■■□□□ 1.45
NUP50-202ENST00000396096 ABCC5O15440 1437 aa24.12■■□□□ 1.45
NUP50-202ENST00000396096 CHIC2Q9UKJ5 165 aa24.11■■□□□ 1.45
NUP50-202ENST00000396096 TONSLQ96HA7 1378 aa24.11■■□□□ 1.45
NUP50-202ENST00000396096 DENND4BO75064 1496 aaPredicted RBP24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms