RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 JPH4Q96JJ6 628 aa23.53■■□□□ 1.36
CXCL12-205ENST00000395794 CUL7Q14999 1698 aa23.51■■□□□ 1.35
CXCL12-205ENST00000395794 SHROOM2Q13796 1616 aa23.5■■□□□ 1.35
CXCL12-205ENST00000395794 ERCC6L2Q5T890 1561 aa23.49■■□□□ 1.35
CXCL12-205ENST00000395794 PRG4Q92954 1404 aaPredicted RBP23.48■■□□□ 1.35
CXCL12-205ENST00000395794 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
CXCL12-205ENST00000395794 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
CXCL12-205ENST00000395794 KIAA0586Q9BVV6 1533 aa23.42■■□□□ 1.34
CXCL12-205ENST00000395794 NPM1P06748 294 aaKnown RBP eCLIP23.28■■□□□ 1.32
CXCL12-205ENST00000395794 RAPGEF2Q9Y4G8 1499 aa23.28■■□□□ 1.32
CXCL12-205ENST00000395794 CARMIL2Q6F5E8 1435 aa23.25■■□□□ 1.31
CXCL12-205ENST00000395794 IQGAP2Q13576 1575 aa23.21■■□□□ 1.31
CXCL12-205ENST00000395794 PTPRGP23470 1445 aa23.19■■□□□ 1.3
CXCL12-205ENST00000395794 TTBK1Q5TCY1 1321 aaPredicted RBP23.18■■□□□ 1.3
CXCL12-205ENST00000395794 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
CXCL12-205ENST00000395794 ADCY10Q96PN6 1610 aa23.09■■□□□ 1.29
CXCL12-205ENST00000395794 FOXD1Q16676 465 aa23.08■■□□□ 1.29
CXCL12-205ENST00000395794 PRXQ9BXM0 1461 aa23.07■■□□□ 1.28
CXCL12-205ENST00000395794 UGGT2Q9NYU1 1516 aa23.07■■□□□ 1.28
CXCL12-205ENST00000395794 CSRNP3Q8WYN3 585 aa23.06■■□□□ 1.28
CXCL12-205ENST00000395794 MAPKBP1O60336 1514 aa23.05■■□□□ 1.28
CXCL12-205ENST00000395794 DISP1Q96F81 1524 aa23.05■■□□□ 1.28
CXCL12-205ENST00000395794 FAM69CQ0P6D2 419 aa23.05■■□□□ 1.28
CXCL12-205ENST00000395794 EEA1Q15075 1411 aa23■■□□□ 1.27
CXCL12-205ENST00000395794 ABCC10Q5T3U5 1492 aa23■■□□□ 1.27
CXCL12-205ENST00000395794 UACAQ9BZF9 1416 aa22.99■■□□□ 1.27
CXCL12-205ENST00000395794 CTTNBP2Q8WZ74 1663 aa22.99■■□□□ 1.27
CXCL12-205ENST00000395794 GOLGA3Q08378 1498 aa22.98■■□□□ 1.27
CXCL12-205ENST00000395794 ABCC2Q92887 1545 aa22.98■■□□□ 1.27
CXCL12-205ENST00000395794 KIAA0556O60303 1618 aa22.97■■□□□ 1.27
CXCL12-205ENST00000395794 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
CXCL12-205ENST00000395794 UHRF1BP1LA0JNW5 1464 aa22.96■■□□□ 1.27
CXCL12-205ENST00000395794 KIF13AQ9H1H9 1805 aa22.94■■□□□ 1.26
CXCL12-205ENST00000395794 DIP2BQ9P265 1576 aa22.91■■□□□ 1.26
CXCL12-205ENST00000395794 PLB1Q6P1J6 1458 aa22.89■■□□□ 1.25
CXCL12-205ENST00000395794 ASXL2Q76L83 1435 aa22.88■■□□□ 1.25
CXCL12-205ENST00000395794 KDM5BQ9UGL1 1544 aa22.84■■□□□ 1.25
CXCL12-205ENST00000395794 P3H3Q8IVL6 736 aa22.82■■□□□ 1.24
CXCL12-205ENST00000395794 RANGAP1P46060 587 aaPredicted RBP22.77■■□□□ 1.24
CXCL12-205ENST00000395794 ZCCHC11Q5TAX3 1644 aaKnown RBP22.77■■□□□ 1.24
CXCL12-205ENST00000395794 ABCA8O94911 1581 aa22.74■■□□□ 1.23
CXCL12-205ENST00000395794 GLI2P10070 1586 aa22.74■■□□□ 1.23
CXCL12-205ENST00000395794 TSPOAP1O95153 1857 aa22.72■■□□□ 1.23
CXCL12-205ENST00000395794 EPRSP07814 1512 aaKnown RBP22.72■■□□□ 1.23
CXCL12-205ENST00000395794 KIF21BO75037 1637 aa22.71■■□□□ 1.23
CXCL12-205ENST00000395794 WDR7Q9Y4E6 1490 aa22.7■■□□□ 1.22
CXCL12-205ENST00000395794 SAMD9Q5K651 1589 aa22.69■■□□□ 1.22
CXCL12-205ENST00000395794 KDM6BO15054 1643 aa22.68■■□□□ 1.22
CXCL12-205ENST00000395794 UBTFP17480 764 aaKnown RBP22.68■■□□□ 1.22
CXCL12-205ENST00000395794 EHMT2Q96KQ7 1210 aa22.67■■□□□ 1.22
CXCL12-205ENST00000395794 ARID3CA6NKF2 412 aa22.66■■□□□ 1.22
CXCL12-205ENST00000395794 KCNH8Q96L42 1107 aa22.66■■□□□ 1.22
CXCL12-205ENST00000395794 TEX14Q8IWB6 1497 aa22.62■■□□□ 1.21
CXCL12-205ENST00000395794 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.62■■□□□ 1.21
CXCL12-205ENST00000395794 HNRNPUL2Q1KMD3 747 aaKnown RBP22.62■■□□□ 1.21
CXCL12-205ENST00000395794 FHOD3Q2V2M9 1422 aa22.6■■□□□ 1.21
CXCL12-205ENST00000395794 MAP3K4Q9Y6R4 1608 aa22.6■■□□□ 1.21
CXCL12-205ENST00000395794 EFCAB5A4FU69 1503 aa22.59■■□□□ 1.21
CXCL12-205ENST00000395794 ATP10BO94823 1461 aa22.59■■□□□ 1.21
CXCL12-205ENST00000395794 RAPGEF6Q8TEU7 1601 aa22.57■■□□□ 1.2
CXCL12-205ENST00000395794 CD109Q6YHK3 1445 aa22.57■■□□□ 1.2
CXCL12-205ENST00000395794 PPRC1Q5VV67 1664 aaKnown RBP22.55■■□□□ 1.2
CXCL12-205ENST00000395794 CFAP43Q8NDM7 1665 aa22.49■■□□□ 1.19
CXCL12-205ENST00000395794 NUP153P49790 1475 aaKnown RBP22.49■■□□□ 1.19
CXCL12-205ENST00000395794 MAGI3Q5TCQ9 1506 aa22.49■■□□□ 1.19
CXCL12-205ENST00000395794 PLEKHD1A6NEE1 506 aa22.47■■□□□ 1.19
CXCL12-205ENST00000395794 COL17A1Q9UMD9 1497 aaPredicted RBP22.44■■□□□ 1.18
CXCL12-205ENST00000395794 FMN1Q68DA7 1419 aa22.43■■□□□ 1.18
CXCL12-205ENST00000395794 ATP1B4Q9UN42 357 aaPredicted RBP22.43■■□□□ 1.18
CXCL12-205ENST00000395794 ARHGAP35Q9NRY4 1499 aa22.4■■□□□ 1.18
CXCL12-205ENST00000395794 ABCA9Q8IUA7 1624 aa22.38■■□□□ 1.17
CXCL12-205ENST00000395794 PHLDB1Q86UU1 1377 aa22.37■■□□□ 1.17
CXCL12-205ENST00000395794 CDK11AQ9UQ88 783 aaPredicted RBP22.33■■□□□ 1.17
CXCL12-205ENST00000395794 KDM4FA0A1W2PPD8 638 aa22.32■■□□□ 1.16
CXCL12-205ENST00000395794 HECW1Q76N89 1606 aa22.31■■□□□ 1.16
CXCL12-205ENST00000395794 ARAP3Q8WWN8 1544 aa22.31■■□□□ 1.16
CXCL12-205ENST00000395794 CDK13Q14004 1512 aaKnown RBP22.3■■□□□ 1.16
CXCL12-205ENST00000395794 NEO1Q92859 1461 aa22.29■■□□□ 1.16
CXCL12-205ENST00000395794 ADGRL1O94910 1474 aa22.22■■□□□ 1.15
CXCL12-205ENST00000395794 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.22■■□□□ 1.15
CXCL12-205ENST00000395794 RAPGEF3O95398 923 aa22.22■■□□□ 1.15
CXCL12-205ENST00000395794 CLIP1P30622 1438 aa22.22■■□□□ 1.15
CXCL12-205ENST00000395794 FANCAO15360 1455 aa22.2■■□□□ 1.14
CXCL12-205ENST00000395794 AKNAQ7Z591 1439 aa22.18■■□□□ 1.14
CXCL12-205ENST00000395794 CASKIN1Q8WXD9 1431 aa22.18■■□□□ 1.14
CXCL12-205ENST00000395794 CFAP74Q9C0B2 1584 aa22.17■■□□□ 1.14
CXCL12-205ENST00000395794 TTC37Q6PGP7 1564 aa22.16■■□□□ 1.14
CXCL12-205ENST00000395794 DENND4BO75064 1496 aaPredicted RBP22.15■■□□□ 1.14
CXCL12-205ENST00000395794 TROQ12816 1431 aaPredicted RBP22.15■■□□□ 1.14
CXCL12-205ENST00000395794 CCDC18Q5T9S5 1454 aa22.15■■□□□ 1.14
CXCL12-205ENST00000395794 PLCH2O75038 1416 aa22.14■■□□□ 1.13
CXCL12-205ENST00000395794 EFCAB2Q5VUJ9 269 aa22.12■■□□□ 1.13
CXCL12-205ENST00000395794 KIF14Q15058 1648 aa22.12■■□□□ 1.13
CXCL12-205ENST00000395794 PCF11O94913 1555 aaKnown RBP22.12■■□□□ 1.13
CXCL12-205ENST00000395794 FYCO1Q9BQS8 1478 aa22.1■■□□□ 1.13
CXCL12-205ENST00000395794 ARID4BQ4LE39 1312 aaPredicted RBP22.06■■□□□ 1.12
CXCL12-205ENST00000395794 FRMPD1Q5SYB0 1578 aa22.06■■□□□ 1.12
CXCL12-205ENST00000395794 SCAPERQ9BY12 1400 aa22.06■■□□□ 1.12
CXCL12-205ENST00000395794 POTEDQ86YR6 584 aa22.05■■□□□ 1.12
CXCL12-205ENST00000395794 LRRIQ1Q96JM4 1722 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms