RNA–Protein interactions for RNA: ENST00000395453.2

SCAF11-203, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SCAF11, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-203ENST00000395453 TOP2BQ02880 1626 aa23.99■■□□□ 1.43
SCAF11-203ENST00000395453 BIVM-ERCC5R4GMW8 1640 aa23.99■■□□□ 1.43
SCAF11-203ENST00000395453 ADAMTS12P58397 1594 aa23.97■■□□□ 1.43
SCAF11-203ENST00000395453 ADRA2BP18089 450 aa23.95■■□□□ 1.42
SCAF11-203ENST00000395453 SHROOM2Q13796 1616 aa23.94■■□□□ 1.42
SCAF11-203ENST00000395453 FHAD1B1AJZ9 1412 aa23.94■■□□□ 1.42
SCAF11-203ENST00000395453 KIF13AQ9H1H9 1805 aa23.87■■□□□ 1.41
SCAF11-203ENST00000395453 PRG4Q92954 1404 aaPredicted RBP23.85■■□□□ 1.41
SCAF11-203ENST00000395453 ERICH3Q5RHP9 1530 aa23.82■■□□□ 1.4
SCAF11-203ENST00000395453 JPH4Q96JJ6 628 aa23.82■■□□□ 1.4
SCAF11-203ENST00000395453 FAM69CQ0P6D2 419 aa23.79■■□□□ 1.4
SCAF11-203ENST00000395453 NPM1P06748 294 aaKnown RBP eCLIP23.78■■□□□ 1.4
SCAF11-203ENST00000395453 ABCC10Q5T3U5 1492 aa23.76■■□□□ 1.39
SCAF11-203ENST00000395453 MAPKBP1O60336 1514 aa23.69■■□□□ 1.38
SCAF11-203ENST00000395453 DIP2BQ9P265 1576 aa23.65■■□□□ 1.38
SCAF11-203ENST00000395453 RUSC2Q8N2Y8 1516 aa23.64■■□□□ 1.37
SCAF11-203ENST00000395453 KDM4FA0A1W2PPD8 638 aa23.62■■□□□ 1.37
SCAF11-203ENST00000395453 ADCY10Q96PN6 1610 aa23.6■■□□□ 1.37
SCAF11-203ENST00000395453 KDM6BO15054 1643 aa23.59■■□□□ 1.37
SCAF11-203ENST00000395453 IGF1RP08069 1367 aa23.54■■□□□ 1.36
SCAF11-203ENST00000395453 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
SCAF11-203ENST00000395453 KIAA0586Q9BVV6 1533 aa23.52■■□□□ 1.36
SCAF11-203ENST00000395453 TSPOAP1O95153 1857 aa23.5■■□□□ 1.35
SCAF11-203ENST00000395453 ILDR1Q86SU0 546 aaPredicted RBP23.45■■□□□ 1.34
SCAF11-203ENST00000395453 CUL7Q14999 1698 aa23.42■■□□□ 1.34
SCAF11-203ENST00000395453 PTPRGP23470 1445 aa23.42■■□□□ 1.34
SCAF11-203ENST00000395453 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
SCAF11-203ENST00000395453 ABCC2Q92887 1545 aa23.35■■□□□ 1.33
SCAF11-203ENST00000395453 TTBK1Q5TCY1 1321 aaPredicted RBP23.34■■□□□ 1.33
SCAF11-203ENST00000395453 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
SCAF11-203ENST00000395453 CARMIL2Q6F5E8 1435 aa23.33■■□□□ 1.33
SCAF11-203ENST00000395453 PLB1Q6P1J6 1458 aa23.33■■□□□ 1.33
SCAF11-203ENST00000395453 ASXL2Q76L83 1435 aa23.32■■□□□ 1.32
SCAF11-203ENST00000395453 GLI2P10070 1586 aa23.31■■□□□ 1.32
SCAF11-203ENST00000395453 ADGRL1O94910 1474 aa23.29■■□□□ 1.32
SCAF11-203ENST00000395453 PPRC1Q5VV67 1664 aaKnown RBP23.26■■□□□ 1.31
SCAF11-203ENST00000395453 UHRF1BP1LA0JNW5 1464 aa23.24■■□□□ 1.31
SCAF11-203ENST00000395453 UACAQ9BZF9 1416 aa23.21■■□□□ 1.31
SCAF11-203ENST00000395453 IQGAP2Q13576 1575 aa23.19■■□□□ 1.3
SCAF11-203ENST00000395453 COL17A1Q9UMD9 1497 aaPredicted RBP23.18■■□□□ 1.3
SCAF11-203ENST00000395453 EPRSP07814 1512 aaKnown RBP23.17■■□□□ 1.3
SCAF11-203ENST00000395453 TEX14Q8IWB6 1497 aa23.17■■□□□ 1.3
SCAF11-203ENST00000395453 RAPGEF2Q9Y4G8 1499 aa23.15■■□□□ 1.3
SCAF11-203ENST00000395453 KDM5BQ9UGL1 1544 aa23.14■■□□□ 1.29
SCAF11-203ENST00000395453 MAP3K4Q9Y6R4 1608 aa23.13■■□□□ 1.29
SCAF11-203ENST00000395453 HECW2Q9P2P5 1572 aa23.13■■□□□ 1.29
SCAF11-203ENST00000395453 DISP1Q96F81 1524 aa23.12■■□□□ 1.29
SCAF11-203ENST00000395453 ZCCHC11Q5TAX3 1644 aaKnown RBP23.05■■□□□ 1.28
SCAF11-203ENST00000395453 UGGT2Q9NYU1 1516 aa23.03■■□□□ 1.28
SCAF11-203ENST00000395453 WDR7Q9Y4E6 1490 aa23■■□□□ 1.27
SCAF11-203ENST00000395453 PRXQ9BXM0 1461 aa22.99■■□□□ 1.27
SCAF11-203ENST00000395453 KIAA0556O60303 1618 aa22.97■■□□□ 1.27
SCAF11-203ENST00000395453 CD109Q6YHK3 1445 aa22.94■■□□□ 1.26
SCAF11-203ENST00000395453 MAGI3Q5TCQ9 1506 aa22.94■■□□□ 1.26
SCAF11-203ENST00000395453 CTTNBP2Q8WZ74 1663 aa22.92■■□□□ 1.26
SCAF11-203ENST00000395453 KCNH8Q96L42 1107 aa22.89■■□□□ 1.26
SCAF11-203ENST00000395453 CFAP43Q8NDM7 1665 aa22.88■■□□□ 1.25
SCAF11-203ENST00000395453 FBXO41Q8TF61 875 aa22.86■■□□□ 1.25
SCAF11-203ENST00000395453 CSRNP3Q8WYN3 585 aa22.85■■□□□ 1.25
SCAF11-203ENST00000395453 GOLGA3Q08378 1498 aa22.83■■□□□ 1.25
SCAF11-203ENST00000395453 ABCA8O94911 1581 aa22.8■■□□□ 1.24
SCAF11-203ENST00000395453 KIF21BO75037 1637 aa22.79■■□□□ 1.24
SCAF11-203ENST00000395453 EEA1Q15075 1411 aa22.77■■□□□ 1.24
SCAF11-203ENST00000395453 ARAP3Q8WWN8 1544 aa22.77■■□□□ 1.24
SCAF11-203ENST00000395453 FAM9AQ8IZU1 332 aaPredicted RBP22.72■■□□□ 1.23
SCAF11-203ENST00000395453 PHLDB1Q86UU1 1377 aa22.72■■□□□ 1.23
SCAF11-203ENST00000395453 PTPRMP28827 1452 aa22.7■■□□□ 1.22
SCAF11-203ENST00000395453 ADAMTSL3P82987 1691 aa22.66■■□□□ 1.22
SCAF11-203ENST00000395453 ARID3CA6NKF2 412 aa22.64■■□□□ 1.22
SCAF11-203ENST00000395453 ATP10BO94823 1461 aa22.64■■□□□ 1.22
SCAF11-203ENST00000395453 SAMD9Q5K651 1589 aa22.64■■□□□ 1.21
SCAF11-203ENST00000395453 P3H3Q8IVL6 736 aa22.63■■□□□ 1.21
SCAF11-203ENST00000395453 RAPGEF3O95398 923 aa22.62■■□□□ 1.21
SCAF11-203ENST00000395453 ABCA9Q8IUA7 1624 aa22.61■■□□□ 1.21
SCAF11-203ENST00000395453 ARID4BQ4LE39 1312 aaPredicted RBP22.59■■□□□ 1.21
SCAF11-203ENST00000395453 NEO1Q92859 1461 aa22.59■■□□□ 1.21
SCAF11-203ENST00000395453 PCF11O94913 1555 aaKnown RBP22.57■■□□□ 1.2
SCAF11-203ENST00000395453 BCORL1Q5H9F3 1711 aa22.55■■□□□ 1.2
SCAF11-203ENST00000395453 LMTK3Q96Q04 1460 aa22.53■■□□□ 1.2
SCAF11-203ENST00000395453 MADDQ8WXG6 1647 aa22.53■■□□□ 1.2
SCAF11-203ENST00000395453 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.51■■□□□ 1.19
SCAF11-203ENST00000395453 HNRNPUL2Q1KMD3 747 aaKnown RBP22.51■■□□□ 1.19
SCAF11-203ENST00000395453 RAPGEF6Q8TEU7 1601 aa22.49■■□□□ 1.19
SCAF11-203ENST00000395453 FRMPD1Q5SYB0 1578 aa22.49■■□□□ 1.19
SCAF11-203ENST00000395453 RANGAP1P46060 587 aaPredicted RBP22.47■■□□□ 1.19
SCAF11-203ENST00000395453 FHOD3Q2V2M9 1422 aa22.46■■□□□ 1.19
SCAF11-203ENST00000395453 DENND4BO75064 1496 aaPredicted RBP22.43■■□□□ 1.18
SCAF11-203ENST00000395453 NUP153P49790 1475 aaKnown RBP22.43■■□□□ 1.18
SCAF11-203ENST00000395453 EFCAB5A4FU69 1503 aa22.43■■□□□ 1.18
SCAF11-203ENST00000395453 ARHGEF40Q8TER5 1519 aa22.42■■□□□ 1.18
SCAF11-203ENST00000395453 RIMS1Q86UR5 1692 aaKnown RBP22.42■■□□□ 1.18
SCAF11-203ENST00000395453 HSPA2P54652 639 aa22.41■■□□□ 1.18
SCAF11-203ENST00000395453 POGZQ7Z3K3 1410 aa22.4■■□□□ 1.18
SCAF11-203ENST00000395453 PLEKHD1A6NEE1 506 aa22.38■■□□□ 1.17
SCAF11-203ENST00000395453 AKNAQ7Z591 1439 aa22.38■■□□□ 1.17
SCAF11-203ENST00000395453 UBTFP17480 764 aaKnown RBP22.37■■□□□ 1.17
SCAF11-203ENST00000395453 RICTORQ6R327 1708 aa22.37■■□□□ 1.17
SCAF11-203ENST00000395453 FANCAO15360 1455 aa22.37■■□□□ 1.17
SCAF11-203ENST00000395453 CERKQ8TCT0 537 aa22.36■■□□□ 1.17
SCAF11-203ENST00000395453 CFAP74Q9C0B2 1584 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms