RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RIMBP3CA6NJZ7 1639 aa11.86□□□□□ -0.51
LIMA1-202ENST00000394943 RIMBP3BA6NNM3 1639 aa11.86□□□□□ -0.51
LIMA1-202ENST00000394943 RIMBP3Q9UFD9 1639 aa11.86□□□□□ -0.51
LIMA1-202ENST00000394943 DNAJC5Q9H3Z4 198 aa11.86□□□□□ -0.51
LIMA1-202ENST00000394943 EFCAB5A4FU69 1503 aa11.86□□□□□ -0.51
LIMA1-202ENST00000394943 KIAA0556O60303 1618 aa11.85□□□□□ -0.51
LIMA1-202ENST00000394943 CSRNP3Q8WYN3 585 aa11.85□□□□□ -0.51
LIMA1-202ENST00000394943 DISP1Q96F81 1524 aa11.85□□□□□ -0.51
LIMA1-202ENST00000394943 ARHGEF11O15085 1522 aa11.82□□□□□ -0.52
LIMA1-202ENST00000394943 OSCARQ8IYS5 282 aa11.81□□□□□ -0.52
LIMA1-202ENST00000394943 UHRF1BP1LA0JNW5 1464 aa11.79□□□□□ -0.52
LIMA1-202ENST00000394943 ERCC6L2Q5T890 1561 aa11.78□□□□□ -0.52
LIMA1-202ENST00000394943 TNIKQ9UKE5 1360 aa11.77□□□□□ -0.52
LIMA1-202ENST00000394943 CHMP7Q8WUX9 453 aaPredicted RBP11.77□□□□□ -0.53
LIMA1-202ENST00000394943 ABCA8O94911 1581 aa11.76□□□□□ -0.53
LIMA1-202ENST00000394943 ARAP1Q96P48 1450 aa11.75□□□□□ -0.53
LIMA1-202ENST00000394943 PRG4Q92954 1404 aaPredicted RBP11.71□□□□□ -0.54
LIMA1-202ENST00000394943 ADCY10Q96PN6 1610 aa11.71□□□□□ -0.54
LIMA1-202ENST00000394943 ARHGAP35Q9NRY4 1499 aa11.7□□□□□ -0.54
LIMA1-202ENST00000394943 CARMIL2Q6F5E8 1435 aa11.68□□□□□ -0.54
LIMA1-202ENST00000394943 ABCC2Q92887 1545 aa11.68□□□□□ -0.54
LIMA1-202ENST00000394943 MAPKBP1O60336 1514 aa11.67□□□□□ -0.54
LIMA1-202ENST00000394943 KDM5BQ9UGL1 1544 aa11.67□□□□□ -0.54
LIMA1-202ENST00000394943 LRRIQ1Q96JM4 1722 aa11.67□□□□□ -0.54
LIMA1-202ENST00000394943 JPH4Q96JJ6 628 aa11.67□□□□□ -0.54
LIMA1-202ENST00000394943 RAPGEF6Q8TEU7 1601 aa11.66□□□□□ -0.54
LIMA1-202ENST00000394943 MAP3K1Q13233 1512 aa11.63□□□□□ -0.55
LIMA1-202ENST00000394943 GLI2P10070 1586 aa11.61□□□□□ -0.55
LIMA1-202ENST00000394943 ZCCHC11Q5TAX3 1644 aaKnown RBP11.61□□□□□ -0.55
LIMA1-202ENST00000394943 HECW1Q76N89 1606 aa11.61□□□□□ -0.55
LIMA1-202ENST00000394943 CFAP43Q8NDM7 1665 aa11.61□□□□□ -0.55
LIMA1-202ENST00000394943 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
LIMA1-202ENST00000394943 UACAQ9BZF9 1416 aa11.59□□□□□ -0.55
LIMA1-202ENST00000394943 AEBP2Q6ZN18 517 aaPredicted RBP11.58□□□□□ -0.55
LIMA1-202ENST00000394943 FMN1Q68DA7 1419 aa11.58□□□□□ -0.56
LIMA1-202ENST00000394943 CASKIN1Q8WXD9 1431 aa11.58□□□□□ -0.56
LIMA1-202ENST00000394943 CEP162Q5TB80 1403 aa11.57□□□□□ -0.56
LIMA1-202ENST00000394943 PCF11O94913 1555 aaKnown RBP11.57□□□□□ -0.56
LIMA1-202ENST00000394943 NUP153P49790 1475 aaKnown RBP11.57□□□□□ -0.56
LIMA1-202ENST00000394943 PTPRGP23470 1445 aa11.56□□□□□ -0.56
LIMA1-202ENST00000394943 FBLN2P98095 1184 aa11.56□□□□□ -0.56
LIMA1-202ENST00000394943 CLIP1P30622 1438 aa11.55□□□□□ -0.56
LIMA1-202ENST00000394943 KIF13AQ9H1H9 1805 aa11.55□□□□□ -0.56
LIMA1-202ENST00000394943 CCDC18Q5T9S5 1454 aa11.54□□□□□ -0.56
LIMA1-202ENST00000394943 MAP3K4Q9Y6R4 1608 aa11.53□□□□□ -0.56
LIMA1-202ENST00000394943 DIP2BQ9P265 1576 aa11.52□□□□□ -0.57
LIMA1-202ENST00000394943 PLB1Q6P1J6 1458 aa11.52□□□□□ -0.57
LIMA1-202ENST00000394943 FHOD3Q2V2M9 1422 aa11.51□□□□□ -0.57
LIMA1-202ENST00000394943 ABCA9Q8IUA7 1624 aa11.51□□□□□ -0.57
LIMA1-202ENST00000394943 ATP10BO94823 1461 aa11.51□□□□□ -0.57
LIMA1-202ENST00000394943 ARAP3Q8WWN8 1544 aa11.51□□□□□ -0.57
LIMA1-202ENST00000394943 PPRC1Q5VV67 1664 aaKnown RBP11.5□□□□□ -0.57
LIMA1-202ENST00000394943 VPS8Q8N3P4 1428 aa11.5□□□□□ -0.57
LIMA1-202ENST00000394943 EPRSP07814 1512 aaKnown RBP11.5□□□□□ -0.57
LIMA1-202ENST00000394943 ABCC10Q5T3U5 1492 aa11.47□□□□□ -0.57
LIMA1-202ENST00000394943 TIAM1Q13009 1591 aa11.47□□□□□ -0.57
LIMA1-202ENST00000394943 WDR7Q9Y4E6 1490 aa11.45□□□□□ -0.58
LIMA1-202ENST00000394943 MAGI3Q5TCQ9 1506 aa11.45□□□□□ -0.58
LIMA1-202ENST00000394943 FAM9AQ8IZU1 332 aaPredicted RBP11.44□□□□□ -0.58
LIMA1-202ENST00000394943 EHBP1L1Q8N3D4 1523 aa11.43□□□□□ -0.58
LIMA1-202ENST00000394943 CFAP74Q9C0B2 1584 aa11.41□□□□□ -0.58
LIMA1-202ENST00000394943 ASXL2Q76L83 1435 aa11.4□□□□□ -0.58
LIMA1-202ENST00000394943 PREX2Q70Z35 1606 aa11.4□□□□□ -0.58
LIMA1-202ENST00000394943 UBTFP17480 764 aaKnown RBP11.4□□□□□ -0.58
LIMA1-202ENST00000394943 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIMA1-202ENST00000394943 KIF14Q15058 1648 aa11.39□□□□□ -0.59
LIMA1-202ENST00000394943 CDK13Q14004 1512 aaKnown RBP11.39□□□□□ -0.59
LIMA1-202ENST00000394943 CDC42BPAQ5VT25 1732 aa11.38□□□□□ -0.59
LIMA1-202ENST00000394943 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
LIMA1-202ENST00000394943 MYO5CQ9NQX4 1742 aa11.38□□□□□ -0.59
LIMA1-202ENST00000394943 ITSN2Q9NZM3 1697 aa11.37□□□□□ -0.59
LIMA1-202ENST00000394943 TTC37Q6PGP7 1564 aa11.37□□□□□ -0.59
LIMA1-202ENST00000394943 SUPT6HQ7KZ85 1726 aaKnown RBP11.37□□□□□ -0.59
LIMA1-202ENST00000394943 CDC42BPBQ9Y5S2 1711 aa11.37□□□□□ -0.59
LIMA1-202ENST00000394943 LOC105371045A0A1W2PR82 267 aa11.36□□□□□ -0.59
LIMA1-202ENST00000394943 LRRC9Q6ZRR7 1453 aa11.35□□□□□ -0.59
LIMA1-202ENST00000394943 PHLDB1Q86UU1 1377 aa11.32□□□□□ -0.6
LIMA1-202ENST00000394943 NEO1Q92859 1461 aa11.32□□□□□ -0.6
LIMA1-202ENST00000394943 CYB5RLQ6IPT4 315 aa11.31□□□□□ -0.6
LIMA1-202ENST00000394943 ZMYM4Q5VZL5 1548 aa11.3□□□□□ -0.6
LIMA1-202ENST00000394943 RICTORQ6R327 1708 aa11.3□□□□□ -0.6
LIMA1-202ENST00000394943 TCOF1Q13428 1488 aaKnown RBP11.29□□□□□ -0.6
LIMA1-202ENST00000394943 FRMPD1Q5SYB0 1578 aa11.29□□□□□ -0.6
LIMA1-202ENST00000394943 PLCH2O75038 1416 aa11.29□□□□□ -0.6
LIMA1-202ENST00000394943 KDM5CP41229 1560 aa11.28□□□□□ -0.6
LIMA1-202ENST00000394943 ARHGEF5Q12774 1597 aa11.28□□□□□ -0.6
LIMA1-202ENST00000394943 TEX14Q8IWB6 1497 aa11.28□□□□□ -0.6
LIMA1-202ENST00000394943 MAST1Q9Y2H9 1570 aa11.27□□□□□ -0.6
LIMA1-202ENST00000394943 CROCC2H7BZ55 1655 aa11.27□□□□□ -0.61
LIMA1-202ENST00000394943 BCORL1Q5H9F3 1711 aa11.27□□□□□ -0.61
LIMA1-202ENST00000394943 ABCC1P33527 1531 aa11.27□□□□□ -0.61
LIMA1-202ENST00000394943 GPATCH8Q9UKJ3 1502 aaKnown RBP11.26□□□□□ -0.61
LIMA1-202ENST00000394943 REREQ9P2R6 1566 aa11.26□□□□□ -0.61
LIMA1-202ENST00000394943 SAMD9LQ8IVG5 1584 aa11.26□□□□□ -0.61
LIMA1-202ENST00000394943 MIA2Q96PC5 1412 aa11.26□□□□□ -0.61
LIMA1-202ENST00000394943 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.25□□□□□ -0.61
LIMA1-202ENST00000394943 KIAA1107Q9UPP5 1409 aa11.24□□□□□ -0.61
LIMA1-202ENST00000394943 NCOA2Q15596 1464 aa11.24□□□□□ -0.61
LIMA1-202ENST00000394943 P3H3Q8IVL6 736 aa11.23□□□□□ -0.61
LIMA1-202ENST00000394943 INO80Q9ULG1 1556 aaPredicted RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms