RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 IGF1RP08069 1367 aa8.06□□□□□ -1.12
RFFL-202ENST00000394597 VPS8Q8N3P4 1428 aa8.06□□□□□ -1.12
RFFL-202ENST00000394597 FHAD1B1AJZ9 1412 aa8.06□□□□□ -1.12
RFFL-202ENST00000394597 ZNF777Q9ULD5 760 aaPredicted RBP8.05□□□□□ -1.12
RFFL-202ENST00000394597 RAD54L2Q9Y4B4 1467 aa8.05□□□□□ -1.12
RFFL-202ENST00000394597 TOP2BQ02880 1626 aa8.05□□□□□ -1.12
RFFL-202ENST00000394597 DNAJC5BQ9UF47 199 aa8.04□□□□□ -1.12
RFFL-202ENST00000394597 CUX1P39880 1505 aa8.04□□□□□ -1.12
RFFL-202ENST00000394597 RTL5Q5HYW3 569 aaPredicted RBP8.03□□□□□ -1.12
RFFL-202ENST00000394597 NPM1P06748 294 aaKnown RBP eCLIP8.02□□□□□ -1.13
RFFL-202ENST00000394597 CLSPNQ9HAW4 1339 aa8.01□□□□□ -1.13
RFFL-202ENST00000394597 GAPVD1Q14C86 1478 aa8.01□□□□□ -1.13
RFFL-202ENST00000394597 PLEKHD1A6NEE1 506 aa8.01□□□□□ -1.13
RFFL-202ENST00000394597 TOPBP1Q92547 1522 aa8.01□□□□□ -1.13
RFFL-202ENST00000394597 LAMC3Q9Y6N6 1575 aa8.01□□□□□ -1.13
RFFL-202ENST00000394597 PRKCSHP14314 528 aaPredicted RBP8□□□□□ -1.13
RFFL-202ENST00000394597 MRC2Q9UBG0 1479 aa7.98□□□□□ -1.13
RFFL-202ENST00000394597 KANK4Q5T7N3 995 aaPredicted RBP7.98□□□□□ -1.13
RFFL-202ENST00000394597 FMN1Q68DA7 1419 aa7.98□□□□□ -1.13
RFFL-202ENST00000394597 CHIC2Q9UKJ5 165 aa7.98□□□□□ -1.13
RFFL-202ENST00000394597 DNMBPQ6XZF7 1577 aa7.98□□□□□ -1.13
RFFL-202ENST00000394597 KIF21BO75037 1637 aa7.98□□□□□ -1.13
RFFL-202ENST00000394597 POLA1P09884 1462 aaPredicted RBP7.97□□□□□ -1.13
RFFL-202ENST00000394597 CARMIL2Q6F5E8 1435 aa7.97□□□□□ -1.13
RFFL-202ENST00000394597 EIF5BO60841 1220 aaKnown RBP7.97□□□□□ -1.13
RFFL-202ENST00000394597 AQRO60306 1485 aaKnown RBP eCLIP7.96□□□□□ -1.135e-10■■■■■ 39.2
RFFL-202ENST00000394597 PRXQ9BXM0 1461 aa7.96□□□□□ -1.14
RFFL-202ENST00000394597 TSPY4P0CV99 314 aa7.96□□□□□ -1.14
RFFL-202ENST00000394597 TSPY10P0CW01 314 aa7.96□□□□□ -1.14
RFFL-202ENST00000394597 ERICH3Q5RHP9 1530 aa7.96□□□□□ -1.14
RFFL-202ENST00000394597 FHOD3Q2V2M9 1422 aa7.95□□□□□ -1.14
RFFL-202ENST00000394597 MIER1Q8N108 512 aa7.95□□□□□ -1.14
RFFL-202ENST00000394597 JPH4Q96JJ6 628 aa7.95□□□□□ -1.14
RFFL-202ENST00000394597 CCNB3Q8WWL7 1395 aa7.94□□□□□ -1.14
RFFL-202ENST00000394597 KCNH8Q96L42 1107 aa7.94□□□□□ -1.14
RFFL-202ENST00000394597 CFDP1Q9UEE9 299 aaPredicted RBP7.94□□□□□ -1.14
RFFL-202ENST00000394597 IFT140Q96RY7 1462 aa7.93□□□□□ -1.14
RFFL-202ENST00000394597 GRIN2BQ13224 1484 aa7.93□□□□□ -1.14
RFFL-202ENST00000394597 BIVM-ERCC5R4GMW8 1640 aa7.92□□□□□ -1.14
RFFL-202ENST00000394597 ABCA10Q8WWZ4 1543 aa7.92□□□□□ -1.14
RFFL-202ENST00000394597 FKBP8Q14318 412 aa7.92□□□□□ -1.14
RFFL-202ENST00000394597 RRP7BPQ9NSQ0 103 aa7.92□□□□□ -1.14
RFFL-202ENST00000394597 POLR3GLQ9BT43 218 aa7.91□□□□□ -1.14
RFFL-202ENST00000394597 ARHGAP35Q9NRY4 1499 aa7.9□□□□□ -1.14
RFFL-202ENST00000394597 URB2Q14146 1524 aaKnown RBP7.89□□□□□ -1.15
RFFL-202ENST00000394597 SUPT16HQ9Y5B9 1047 aaKnown RBP7.89□□□□□ -1.15
RFFL-202ENST00000394597 TONSLQ96HA7 1378 aa7.88□□□□□ -1.15
RFFL-202ENST00000394597 ZNF326Q5BKZ1 582 aaKnown RBP7.88□□□□□ -1.15
RFFL-202ENST00000394597 TSHZ2Q9NRE2 1034 aa7.87□□□□□ -1.15
RFFL-202ENST00000394597 NBR1Q14596 966 aa7.86□□□□□ -1.15
RFFL-202ENST00000394597 ARAP1Q96P48 1450 aa7.85□□□□□ -1.15
RFFL-202ENST00000394597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.85□□□□□ -1.15
RFFL-202ENST00000394597 SLC4A1APQ9BWU0 796 aaKnown RBP7.85□□□□□ -1.15
RFFL-202ENST00000394597 PTPRGP23470 1445 aa7.84□□□□□ -1.16
RFFL-202ENST00000394597 SETD5Q9C0A6 1442 aa7.84□□□□□ -1.16
RFFL-202ENST00000394597 SNAPC4Q5SXM2 1469 aa7.83□□□□□ -1.16
RFFL-202ENST00000394597 CASKIN1Q8WXD9 1431 aa7.82□□□□□ -1.16
RFFL-202ENST00000394597 DAXXQ9UER7 740 aaPredicted RBP7.82□□□□□ -1.16
RFFL-202ENST00000394597 CCDC18Q5T9S5 1454 aa7.82□□□□□ -1.16
RFFL-202ENST00000394597 CUL7Q14999 1698 aa7.82□□□□□ -1.16
RFFL-202ENST00000394597 EFCAB5A4FU69 1503 aa7.82□□□□□ -1.16
RFFL-202ENST00000394597 GLIPR1L2Q4G1C9 344 aa7.82□□□□□ -1.16
RFFL-202ENST00000394597 OSCARQ8IYS5 282 aa7.81□□□□□ -1.16
RFFL-202ENST00000394597 DEKP35659 375 aaKnown RBP7.81□□□□□ -1.16
RFFL-202ENST00000394597 CNGB1Q14028 1251 aaPredicted RBP7.8□□□□□ -1.16
RFFL-202ENST00000394597 RTN4Q9NQC3 1192 aaKnown RBP7.8□□□□□ -1.16
RFFL-202ENST00000394597 ANP32CO43423 234 aa7.79□□□□□ -1.16
RFFL-202ENST00000394597 RBM19Q9Y4C8 960 aaKnown RBP7.79□□□□□ -1.16
RFFL-202ENST00000394597 LRRC9Q6ZRR7 1453 aa7.79□□□□□ -1.16
RFFL-202ENST00000394597 RAB3GAP2Q9H2M9 1393 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 FYCO1Q9BQS8 1478 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 KIAA0586Q9BVV6 1533 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 SIN3AQ96ST3 1273 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 PRDM2Q13029 1718 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 ZNF608Q9ULD9 1512 aaPredicted RBP7.78□□□□□ -1.16
RFFL-202ENST00000394597 EFCAB2Q5VUJ9 269 aa7.78□□□□□ -1.16
RFFL-202ENST00000394597 ESF1Q9H501 851 aaKnown RBP7.77□□□□□ -1.16
RFFL-202ENST00000394597 ANP32AP39687 249 aaKnown RBP7.77□□□□□ -1.17
RFFL-202ENST00000394597 MAGI1Q96QZ7 1491 aaPredicted RBP7.77□□□□□ -1.17
RFFL-202ENST00000394597 RSPH4AQ5TD94 716 aa7.76□□□□□ -1.17
RFFL-202ENST00000394597 TIMELESSQ9UNS1 1208 aa7.76□□□□□ -1.17
RFFL-202ENST00000394597 SYNJ2O15056 1496 aa7.76□□□□□ -1.17
RFFL-202ENST00000394597 CHGAP10645 457 aaKnown RBP7.76□□□□□ -1.17
RFFL-202ENST00000394597 PRG4Q92954 1404 aaPredicted RBP7.76□□□□□ -1.17
RFFL-202ENST00000394597 KIF21AQ7Z4S6 1674 aa7.75□□□□□ -1.17
RFFL-202ENST00000394597 KDM2AQ9Y2K7 1162 aa7.75□□□□□ -1.17
RFFL-202ENST00000394597 PHLDB1Q86UU1 1377 aa7.75□□□□□ -1.17
RFFL-202ENST00000394597 CCDC136Q96JN2 1154 aa7.75□□□□□ -1.17
RFFL-202ENST00000394597 GRIN2AQ12879 1464 aa7.74□□□□□ -1.17
RFFL-202ENST00000394597 HNRNPMP52272 730 aaKnown RBP eCLIP7.74□□□□□ -1.172e-6■■■■□ 25
RFFL-202ENST00000394597 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.74□□□□□ -1.17
RFFL-202ENST00000394597 ANKRD30AQ9BXX3 1397 aa7.74□□□□□ -1.17
RFFL-202ENST00000394597 IQGAP2Q13576 1575 aa7.74□□□□□ -1.17
RFFL-202ENST00000394597 DDX10Q13206 875 aaKnown RBP7.74□□□□□ -1.17
RFFL-202ENST00000394597 MYOM3Q5VTT5 1437 aa7.73□□□□□ -1.17
RFFL-202ENST00000394597 FGD6Q6ZV73 1430 aa7.73□□□□□ -1.17
RFFL-202ENST00000394597 MPHOSPH9Q99550 1183 aa7.73□□□□□ -1.17
RFFL-202ENST00000394597 ANO8Q9HCE9 1232 aaPredicted RBP7.73□□□□□ -1.17
RFFL-202ENST00000394597 EIF4G2P78344 907 aaKnown RBP eCLIP7.72□□□□□ -1.17
RFFL-202ENST00000394597 TIAM1Q13009 1591 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms