RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ARHGEF11O15085 1522 aa12.21□□□□□ -0.45
LIMS1-203ENST00000393310 FHAD1B1AJZ9 1412 aa12.21□□□□□ -0.46
LIMS1-203ENST00000393310 TOPBP1Q92547 1522 aa12.2□□□□□ -0.46
LIMS1-203ENST00000393310 HDGFP51858 240 aaKnown RBP12.2□□□□□ -0.46
LIMS1-203ENST00000393310 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
LIMS1-203ENST00000393310 C14orf37Q86TY3 774 aa12.18□□□□□ -0.46
LIMS1-203ENST00000393310 PRG4Q92954 1404 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-203ENST00000393310 DNMBPQ6XZF7 1577 aa12.16□□□□□ -0.46
LIMS1-203ENST00000393310 ARID3CA6NKF2 412 aa12.15□□□□□ -0.46
LIMS1-203ENST00000393310 EFCAB2Q5VUJ9 269 aa12.15□□□□□ -0.46
LIMS1-203ENST00000393310 FBXO41Q8TF61 875 aa12.15□□□□□ -0.46
LIMS1-203ENST00000393310 TNIKQ9UKE5 1360 aa12.15□□□□□ -0.46
LIMS1-203ENST00000393310 PLB1Q6P1J6 1458 aa12.14□□□□□ -0.47
LIMS1-203ENST00000393310 GOLGA3Q08378 1498 aa12.13□□□□□ -0.47
LIMS1-203ENST00000393310 PHLDB1Q86UU1 1377 aa12.13□□□□□ -0.47
LIMS1-203ENST00000393310 CCDC88BA6NC98 1476 aa12.12□□□□□ -0.47
LIMS1-203ENST00000393310 PEG3Q9GZU2 1588 aa12.11□□□□□ -0.47
LIMS1-203ENST00000393310 DISP3Q9P2K9 1392 aa12.1□□□□□ -0.47
LIMS1-203ENST00000393310 CARMIL1Q5VZK9 1371 aa12.09□□□□□ -0.47
LIMS1-203ENST00000393310 FGD5Q6ZNL6 1462 aa12.08□□□□□ -0.47
LIMS1-203ENST00000393310 ZNF777Q9ULD5 760 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-203ENST00000393310 CENPBP07199 599 aaPredicted RBP12.08□□□□□ -0.48
LIMS1-203ENST00000393310 P3H3Q8IVL6 736 aa12.07□□□□□ -0.48
LIMS1-203ENST00000393310 TOM1O60784 492 aa12.07□□□□□ -0.48
LIMS1-203ENST00000393310 MEX3CQ5U5Q3 659 aaKnown RBP12.06□□□□□ -0.48
LIMS1-203ENST00000393310 TSPY4P0CV99 314 aa12.05□□□□□ -0.48
LIMS1-203ENST00000393310 TSPY10P0CW01 314 aa12.05□□□□□ -0.48
LIMS1-203ENST00000393310 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
LIMS1-203ENST00000393310 PPP1R15AO75807 674 aaPredicted RBP12.05□□□□□ -0.48
LIMS1-203ENST00000393310 URB2Q14146 1524 aaKnown RBP12.04□□□□□ -0.48
LIMS1-203ENST00000393310 CLIP1P30622 1438 aa12.03□□□□□ -0.48
LIMS1-203ENST00000393310 EID1Q9Y6B2 187 aa12.02□□□□□ -0.48
LIMS1-203ENST00000393310 POLA1P09884 1462 aaPredicted RBP12.02□□□□□ -0.49
LIMS1-203ENST00000393310 RAD54L2Q9Y4B4 1467 aa12.02□□□□□ -0.49
LIMS1-203ENST00000393310 KCNA4P22459 653 aa12.01□□□□□ -0.49
LIMS1-203ENST00000393310 WDR97A6NE52 1622 aa12□□□□□ -0.49
LIMS1-203ENST00000393310 HAP1P54257 671 aaPredicted RBP12□□□□□ -0.49
LIMS1-203ENST00000393310 KIF21AQ7Z4S6 1674 aa12□□□□□ -0.49
LIMS1-203ENST00000393310 UBAP1LF5GYI3 381 aa11.99□□□□□ -0.49
LIMS1-203ENST00000393310 ZNF608Q9ULD9 1512 aaPredicted RBP11.99□□□□□ -0.49
LIMS1-203ENST00000393310 ILDR1Q86SU0 546 aaPredicted RBP11.98□□□□□ -0.49
LIMS1-203ENST00000393310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.97□□□□□ -0.49
LIMS1-203ENST00000393310 WIZO95785 1651 aa11.96□□□□□ -0.49
LIMS1-203ENST00000393310 RIMBP3CA6NJZ7 1639 aa11.96□□□□□ -0.49
LIMS1-203ENST00000393310 RIMBP3BA6NNM3 1639 aa11.96□□□□□ -0.49
LIMS1-203ENST00000393310 RIMBP3Q9UFD9 1639 aa11.96□□□□□ -0.49
LIMS1-203ENST00000393310 SF3B2Q13435 895 aaKnown RBP11.96□□□□□ -0.5
LIMS1-203ENST00000393310 CSRNP3Q8WYN3 585 aa11.95□□□□□ -0.5
LIMS1-203ENST00000393310 AMER1Q5JTC6 1135 aaPredicted RBP11.95□□□□□ -0.5
LIMS1-203ENST00000393310 GRIN2AQ12879 1464 aa11.94□□□□□ -0.5
LIMS1-203ENST00000393310 AKNAQ7Z591 1439 aa11.94□□□□□ -0.5
LIMS1-203ENST00000393310 CD109Q6YHK3 1445 aa11.93□□□□□ -0.5
LIMS1-203ENST00000393310 ARAP1Q96P48 1450 aa11.92□□□□□ -0.5
LIMS1-203ENST00000393310 UACAQ9BZF9 1416 aa11.91□□□□□ -0.5
LIMS1-203ENST00000393310 BCL11AQ9H165 835 aa11.89□□□□□ -0.51
LIMS1-203ENST00000393310 KIAA0586Q9BVV6 1533 aa11.89□□□□□ -0.51
LIMS1-203ENST00000393310 TOP2BQ02880 1626 aa11.88□□□□□ -0.51
LIMS1-203ENST00000393310 CERKQ8TCT0 537 aa11.87□□□□□ -0.51
LIMS1-203ENST00000393310 CHGAP10645 457 aaKnown RBP11.86□□□□□ -0.51
LIMS1-203ENST00000393310 NCBP3Q53F19 620 aaKnown RBP11.86□□□□□ -0.51
LIMS1-203ENST00000393310 LMTK3Q96Q04 1460 aa11.86□□□□□ -0.51
LIMS1-203ENST00000393310 KDM6BO15054 1643 aa11.86□□□□□ -0.51
LIMS1-203ENST00000393310 THEMISQ8N1K5 641 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-203ENST00000393310 A0A0G2JS52 829 aa11.85□□□□□ -0.51
LIMS1-203ENST00000393310 PIP4K2BP78356 416 aa11.85□□□□□ -0.51
LIMS1-203ENST00000393310 SENP3Q9H4L4 574 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-203ENST00000393310 EIF4G3O43432 1585 aaKnown RBP11.85□□□□□ -0.51
LIMS1-203ENST00000393310 KANK1Q14678 1352 aa11.84□□□□□ -0.51
LIMS1-203ENST00000393310 ABCA10Q8WWZ4 1543 aa11.83□□□□□ -0.52
LIMS1-203ENST00000393310 GGT6Q6P531 493 aa11.83□□□□□ -0.52
LIMS1-203ENST00000393310 ANKLE2Q86XL3 938 aa11.83□□□□□ -0.52
LIMS1-203ENST00000393310 CFDP1Q9UEE9 299 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-203ENST00000393310 RSPH4AQ5TD94 716 aa11.82□□□□□ -0.52
LIMS1-203ENST00000393310 EEA1Q15075 1411 aa11.81□□□□□ -0.52
LIMS1-203ENST00000393310 PPP6R1Q9UPN7 881 aa11.81□□□□□ -0.52
LIMS1-203ENST00000393310 SPAG9O60271 1321 aaKnown RBP11.8□□□□□ -0.52
LIMS1-203ENST00000393310 PKD2Q13563 968 aa11.8□□□□□ -0.52
LIMS1-203ENST00000393310 FANCAO15360 1455 aa11.79□□□□□ -0.52
LIMS1-203ENST00000393310 ABCC10Q5T3U5 1492 aa11.79□□□□□ -0.52
LIMS1-203ENST00000393310 RAPGEF2Q9Y4G8 1499 aa11.78□□□□□ -0.52
LIMS1-203ENST00000393310 ASXL2Q76L83 1435 aa11.78□□□□□ -0.52
LIMS1-203ENST00000393310 ERICH3Q5RHP9 1530 aa11.77□□□□□ -0.52
LIMS1-203ENST00000393310 MTUS2Q5JR59 1369 aa11.77□□□□□ -0.53
LIMS1-203ENST00000393310 UHRF1BP1Q6BDS2 1440 aa11.77□□□□□ -0.53
LIMS1-203ENST00000393310 DENND4BO75064 1496 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-203ENST00000393310 WASHC2CQ9Y4E1 1318 aa11.72□□□□□ -0.53
LIMS1-203ENST00000393310 ATF3P18847 181 aa11.72□□□□□ -0.53
LIMS1-203ENST00000393310 HMGB2P26583 209 aaKnown RBP11.71□□□□□ -0.54
LIMS1-203ENST00000393310 NUP160Q12769 1436 aa11.7□□□□□ -0.54
LIMS1-203ENST00000393310 CCNB3Q8WWL7 1395 aa11.7□□□□□ -0.54
LIMS1-203ENST00000393310 SOCS7O14512 581 aa11.7□□□□□ -0.54
LIMS1-203ENST00000393310 ABCC2Q92887 1545 aa11.69□□□□□ -0.54
LIMS1-203ENST00000393310 FMN1Q68DA7 1419 aa11.68□□□□□ -0.54
LIMS1-203ENST00000393310 HSPA2P54652 639 aa11.68□□□□□ -0.54
LIMS1-203ENST00000393310 RAPGEF3O95398 923 aa11.68□□□□□ -0.54
LIMS1-203ENST00000393310 CCDC9Q9Y3X0 531 aaKnown RBP11.68□□□□□ -0.54
LIMS1-203ENST00000393310 NGLY1Q96IV0 654 aa11.67□□□□□ -0.54
LIMS1-203ENST00000393310 CNTLNQ9NXG0 1405 aa11.67□□□□□ -0.54
LIMS1-203ENST00000393310 GLIPR1L2Q4G1C9 344 aa11.67□□□□□ -0.54
LIMS1-203ENST00000393310 YTHDC1Q96MU7 727 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms