RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CDCA8Q53HL2 280 aa12.56□□□□□ -0.4
SNX1-202ENST00000380285 TSPY4P0CV99 314 aa12.55□□□□□ -0.4
SNX1-202ENST00000380285 TSPY10P0CW01 314 aa12.55□□□□□ -0.4
SNX1-202ENST00000380285 CASC1Q6TDU7 716 aa12.53□□□□□ -0.4
SNX1-202ENST00000380285 ESF1Q9H501 851 aaKnown RBP12.53□□□□□ -0.4
SNX1-202ENST00000380285 NOP58Q9Y2X3 529 aaKnown RBP12.53□□□□□ -0.4
SNX1-202ENST00000380285 CHMP4BQ9H444 224 aaKnown RBP12.52□□□□□ -0.4
SNX1-202ENST00000380285 CEP164Q9UPV0 1460 aa12.52□□□□□ -0.4
SNX1-202ENST00000380285 TNIKQ9UKE5 1360 aa12.52□□□□□ -0.41
SNX1-202ENST00000380285 TIMELESSQ9UNS1 1208 aa12.51□□□□□ -0.41
SNX1-202ENST00000380285 SALL2Q9Y467 1007 aaPredicted RBP12.5□□□□□ -0.41
SNX1-202ENST00000380285 STAG3Q9UJ98 1225 aa12.5□□□□□ -0.41
SNX1-202ENST00000380285 CDK11BP21127 795 aaKnown RBP12.49□□□□□ -0.41
SNX1-202ENST00000380285 MS4A1P11836 297 aa12.48□□□□□ -0.41
SNX1-202ENST00000380285 MYO15BQ96JP2 1530 aa12.48□□□□□ -0.41
SNX1-202ENST00000380285 ARXQ96QS3 562 aa12.47□□□□□ -0.41
SNX1-202ENST00000380285 CFAP53Q96M91 514 aa12.47□□□□□ -0.41
SNX1-202ENST00000380285 PTMAP06454 111 aaKnown RBP12.46□□□□□ -0.41
SNX1-202ENST00000380285 L1TD1Q5T7N2 865 aaKnown RBP12.46□□□□□ -0.41
SNX1-202ENST00000380285 ARID3CA6NKF2 412 aa12.46□□□□□ -0.41
SNX1-202ENST00000380285 IRX6P78412 446 aaPredicted RBP12.46□□□□□ -0.42
SNX1-202ENST00000380285 CCER2I3L3R5 266 aa12.45□□□□□ -0.42
SNX1-202ENST00000380285 CFAP44Q96MT7 982 aa12.45□□□□□ -0.42
SNX1-202ENST00000380285 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
SNX1-202ENST00000380285 SUPT16HQ9Y5B9 1047 aaKnown RBP12.45□□□□□ -0.42
SNX1-202ENST00000380285 ZRSR1Q15695 479 aaKnown RBP12.45□□□□□ -0.42
SNX1-202ENST00000380285 CHIC2Q9UKJ5 165 aa12.44□□□□□ -0.42
SNX1-202ENST00000380285 RB1CC1Q8TDY2 1594 aa12.44□□□□□ -0.42
SNX1-202ENST00000380285 PTMSP20962 102 aa12.43□□□□□ -0.42
SNX1-202ENST00000380285 GOLGA6L6A8MZA4 724 aa12.42□□□□□ -0.42
SNX1-202ENST00000380285 DNTTIP2Q5QJE6 756 aaKnown RBP12.42□□□□□ -0.42
SNX1-202ENST00000380285 KNSTRNQ9Y448 316 aa12.41□□□□□ -0.42
SNX1-202ENST00000380285 NAP1L5Q96NT1 182 aaPredicted RBP12.41□□□□□ -0.42
SNX1-202ENST00000380285 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
SNX1-202ENST00000380285 FTSJ3Q8IY81 847 aaKnown RBP12.4□□□□□ -0.42
SNX1-202ENST00000380285 KDM2AQ9Y2K7 1162 aa12.4□□□□□ -0.42
SNX1-202ENST00000380285 NRDCO43847 1150 aa12.4□□□□□ -0.42
SNX1-202ENST00000380285 KIF27Q86VH2 1401 aa12.39□□□□□ -0.43
SNX1-202ENST00000380285 FHAD1B1AJZ9 1412 aa12.39□□□□□ -0.43
SNX1-202ENST00000380285 WRNQ14191 1432 aaPredicted RBP eCLIP12.39□□□□□ -0.43
SNX1-202ENST00000380285 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.38□□□□□ -0.436e-7■■□□□ 13.5
SNX1-202ENST00000380285 NACADO15069 1562 aa12.37□□□□□ -0.43
SNX1-202ENST00000380285 CHAF1AQ13111 956 aaPredicted RBP12.37□□□□□ -0.43
SNX1-202ENST00000380285 PNNQ9H307 717 aaKnown RBP12.37□□□□□ -0.43
SNX1-202ENST00000380285 ARID4BQ4LE39 1312 aaPredicted RBP12.34□□□□□ -0.43
SNX1-202ENST00000380285 CCNB3Q8WWL7 1395 aa12.33□□□□□ -0.44
SNX1-202ENST00000380285 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
SNX1-202ENST00000380285 HSP90AB1P08238 724 aaKnown RBP12.32□□□□□ -0.44
SNX1-202ENST00000380285 RRP7BPQ9NSQ0 103 aa12.32□□□□□ -0.44
SNX1-202ENST00000380285 MSNP26038 577 aaKnown RBP12.32□□□□□ -0.44
SNX1-202ENST00000380285 HSCBQ8IWL3 235 aa12.32□□□□□ -0.44
SNX1-202ENST00000380285 CARD11Q9BXL7 1154 aa12.32□□□□□ -0.44
SNX1-202ENST00000380285 DEKP35659 375 aaKnown RBP12.32□□□□□ -0.44
SNX1-202ENST00000380285 HIRIP3Q9BW71 556 aaPredicted RBP12.31□□□□□ -0.44
SNX1-202ENST00000380285 MAPK8IP3Q9UPT6 1336 aa12.3□□□□□ -0.44
SNX1-202ENST00000380285 LAS1LQ9Y4W2 734 aaKnown RBP12.3□□□□□ -0.44
SNX1-202ENST00000380285 BAZ1AQ9NRL2 1556 aaPredicted RBP12.3□□□□□ -0.44
SNX1-202ENST00000380285 RBM19Q9Y4C8 960 aaKnown RBP12.29□□□□□ -0.44
SNX1-202ENST00000380285 PLEKHD1A6NEE1 506 aa12.29□□□□□ -0.44
SNX1-202ENST00000380285 HAP1P54257 671 aaPredicted RBP12.28□□□□□ -0.44
SNX1-202ENST00000380285 TCERG1O14776 1098 aaKnown RBP12.27□□□□□ -0.45
SNX1-202ENST00000380285 BAZ1BQ9UIG0 1483 aaKnown RBP12.26□□□□□ -0.45
SNX1-202ENST00000380285 MCCP23508 829 aa12.26□□□□□ -0.45
SNX1-202ENST00000380285 SETD5Q9C0A6 1442 aa12.25□□□□□ -0.45
SNX1-202ENST00000380285 GBP4Q96PP9 640 aa12.25□□□□□ -0.45
SNX1-202ENST00000380285 CHMP7Q8WUX9 453 aaPredicted RBP12.24□□□□□ -0.45
SNX1-202ENST00000380285 RGS3P49796 1198 aa12.24□□□□□ -0.45
SNX1-202ENST00000380285 CFDP1Q9UEE9 299 aaPredicted RBP12.24□□□□□ -0.45
SNX1-202ENST00000380285 B4GALNT3Q6L9W6 998 aa12.23□□□□□ -0.45
SNX1-202ENST00000380285 VPS8Q8N3P4 1428 aa12.23□□□□□ -0.45
SNX1-202ENST00000380285 USP35Q9P2H5 1018 aa12.23□□□□□ -0.45
SNX1-202ENST00000380285 TMF1P82094 1093 aa12.23□□□□□ -0.45
SNX1-202ENST00000380285 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.46
SNX1-202ENST00000380285 GOLGA6L4A6NEF3 574 aa12.2□□□□□ -0.46
SNX1-202ENST00000380285 SYAP1Q96A49 352 aaPredicted RBP12.2□□□□□ -0.46
SNX1-202ENST00000380285 RTN4Q9NQC3 1192 aaKnown RBP12.19□□□□□ -0.46
SNX1-202ENST00000380285 RALBP1Q15311 655 aa12.19□□□□□ -0.46
SNX1-202ENST00000380285 KTN1Q86UP2 1357 aaKnown RBP12.19□□□□□ -0.46
SNX1-202ENST00000380285 PPP1R15AO75807 674 aaPredicted RBP12.19□□□□□ -0.46
SNX1-202ENST00000380285 KIAA2012Q0VF49 1180 aa12.18□□□□□ -0.46
SNX1-202ENST00000380285 IPO8O15397 1037 aaKnown RBP12.17□□□□□ -0.46
SNX1-202ENST00000380285 FRAT1Q92837 279 aaPredicted RBP12.17□□□□□ -0.46
SNX1-202ENST00000380285 PHLDB1Q86UU1 1377 aa12.17□□□□□ -0.46
SNX1-202ENST00000380285 IPO9Q96P70 1041 aaKnown RBP12.16□□□□□ -0.46
SNX1-202ENST00000380285 RGL3Q3MIN7 710 aa12.16□□□□□ -0.46
SNX1-202ENST00000380285 PLCB2Q00722 1185 aa12.15□□□□□ -0.46
SNX1-202ENST00000380285 CALD1Q05682 793 aaKnown RBP12.15□□□□□ -0.46
SNX1-202ENST00000380285 ROCK2O75116 1388 aaKnown RBP12.15□□□□□ -0.46
SNX1-202ENST00000380285 HTATSF1O43719 755 aaKnown RBP12.15□□□□□ -0.46
SNX1-202ENST00000380285 KANK1Q14678 1352 aa12.15□□□□□ -0.47
SNX1-202ENST00000380285 PDE3BQ13370 1112 aa12.14□□□□□ -0.47
SNX1-202ENST00000380285 FGD1P98174 961 aa12.14□□□□□ -0.47
SNX1-202ENST00000380285 SIN3AQ96ST3 1273 aa12.14□□□□□ -0.47
SNX1-202ENST00000380285 RWDD1Q9H446 243 aaPredicted RBP12.14□□□□□ -0.47
SNX1-202ENST00000380285 KCNJ4P48050 445 aa12.13□□□□□ -0.47
SNX1-202ENST00000380285 PMFBP1Q8TBY8 1022 aa12.13□□□□□ -0.47
SNX1-202ENST00000380285 RCAN3Q9UKA8 241 aa12.13□□□□□ -0.47
SNX1-202ENST00000380285 CHMP4AQ9BY43 222 aa12.13□□□□□ -0.47
SNX1-202ENST00000380285 RSPH6AQ9H0K4 717 aa12.12□□□□□ -0.47
SNX1-202ENST00000380285 GOLGA6L3A6NEY3 463 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms