RNA–Protein interactions for RNA: ENST00000379599.6

NHLRC3-201, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,275 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-201ENST00000379599 PDIA4P13667 645 aaKnown RBP11.59□□□□□ -0.55
NHLRC3-201ENST00000379599 HNRNPUQ00839 825 aaKnown RBP eCLIP11.58□□□□□ -0.56
NHLRC3-201ENST00000379599 BCL11BQ9C0K0 894 aaPredicted RBP11.58□□□□□ -0.56
NHLRC3-201ENST00000379599 FAM43AQ8N2R8 423 aa11.57□□□□□ -0.56
NHLRC3-201ENST00000379599 ANP32CO43423 234 aa11.56□□□□□ -0.56
NHLRC3-201ENST00000379599 AEBP2Q6ZN18 517 aaPredicted RBP11.55□□□□□ -0.56
NHLRC3-201ENST00000379599 WRNQ14191 1432 aaPredicted RBP eCLIP11.55□□□□□ -0.56
NHLRC3-201ENST00000379599 NAP1L5Q96NT1 182 aaPredicted RBP11.54□□□□□ -0.56
NHLRC3-201ENST00000379599 PPM1GO15355 546 aaPredicted RBP11.54□□□□□ -0.56
NHLRC3-201ENST00000379599 HSP90AA1P07900 732 aaKnown RBP11.53□□□□□ -0.56
NHLRC3-201ENST00000379599 FRAT1Q92837 279 aaPredicted RBP11.52□□□□□ -0.56
NHLRC3-201ENST00000379599 CCER2I3L3R5 266 aa11.51□□□□□ -0.57
NHLRC3-201ENST00000379599 RRP9O43818 475 aaKnown RBP11.5□□□□□ -0.57
NHLRC3-201ENST00000379599 CEP162Q5TB80 1403 aa11.48□□□□□ -0.57
NHLRC3-201ENST00000379599 HIRIP3Q9BW71 556 aaPredicted RBP11.46□□□□□ -0.58
NHLRC3-201ENST00000379599 DHX57Q6P158 1386 aaKnown RBP11.45□□□□□ -0.58
NHLRC3-201ENST00000379599 UBTFP17480 764 aaKnown RBP11.45□□□□□ -0.58
NHLRC3-201ENST00000379599 SIN3AQ96ST3 1273 aa11.44□□□□□ -0.58
NHLRC3-201ENST00000379599 ARID4BQ4LE39 1312 aaPredicted RBP11.43□□□□□ -0.58
NHLRC3-201ENST00000379599 DCAF11Q8TEB1 546 aa11.43□□□□□ -0.58
NHLRC3-201ENST00000379599 NFKBIBQ15653 356 aa11.41□□□□□ -0.58
NHLRC3-201ENST00000379599 RRAGDQ9NQL2 400 aaPredicted RBP11.41□□□□□ -0.58
NHLRC3-201ENST00000379599 PNNQ9H307 717 aaKnown RBP11.41□□□□□ -0.58
NHLRC3-201ENST00000379599 PPP1R15AO75807 674 aaPredicted RBP11.41□□□□□ -0.58
NHLRC3-201ENST00000379599 RGS3P49796 1198 aa11.4□□□□□ -0.58
NHLRC3-201ENST00000379599 SCRIBQ14160 1630 aa11.37□□□□□ -0.59
NHLRC3-201ENST00000379599 NACADO15069 1562 aa11.35□□□□□ -0.59
NHLRC3-201ENST00000379599 EEA1Q15075 1411 aa11.35□□□□□ -0.59
NHLRC3-201ENST00000379599 BBXQ8WY36 941 aaPredicted RBP11.33□□□□□ -0.6
NHLRC3-201ENST00000379599 BAZ1BQ9UIG0 1483 aaKnown RBP11.33□□□□□ -0.6
NHLRC3-201ENST00000379599 TAF7LQ5H9L4 462 aa11.33□□□□□ -0.6
NHLRC3-201ENST00000379599 SLC4A3P48751 1232 aa11.33□□□□□ -0.6
NHLRC3-201ENST00000379599 ARXQ96QS3 562 aa11.33□□□□□ -0.6
NHLRC3-201ENST00000379599 PAXIP1Q6ZW49 1069 aaPredicted RBP11.3□□□□□ -0.6
NHLRC3-201ENST00000379599 KLHL34Q8N239 644 aa11.3□□□□□ -0.6
NHLRC3-201ENST00000379599 PRDM4Q9UKN5 801 aa11.3□□□□□ -0.6
NHLRC3-201ENST00000379599 NAP1L2Q9ULW6 460 aaPredicted RBP11.3□□□□□ -0.6
NHLRC3-201ENST00000379599 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
NHLRC3-201ENST00000379599 PDE4AP27815 886 aa11.29□□□□□ -0.6
NHLRC3-201ENST00000379599 CALD1Q05682 793 aaKnown RBP11.29□□□□□ -0.6
NHLRC3-201ENST00000379599 CHMP4BQ9H444 224 aaKnown RBP11.29□□□□□ -0.6
NHLRC3-201ENST00000379599 FRAT2O75474 233 aaPredicted RBP11.29□□□□□ -0.6
NHLRC3-201ENST00000379599 DDRGK1Q96HY6 314 aa11.29□□□□□ -0.6
NHLRC3-201ENST00000379599 PABPN1Q86U42 306 aaKnown RBP eCLIP11.28□□□□□ -0.6
NHLRC3-201ENST00000379599 FAM9BQ8IZU0 186 aa11.28□□□□□ -0.6
NHLRC3-201ENST00000379599 RB1CC1Q8TDY2 1594 aa11.28□□□□□ -0.6
NHLRC3-201ENST00000379599 PDCL3Q9H2J4 239 aa11.26□□□□□ -0.61
NHLRC3-201ENST00000379599 RANGAP1P46060 587 aaPredicted RBP11.24□□□□□ -0.61
NHLRC3-201ENST00000379599 RSF1Q96T23 1441 aaPredicted RBP11.24□□□□□ -0.61
NHLRC3-201ENST00000379599 CANXP27824 592 aaKnown RBP11.23□□□□□ -0.61
NHLRC3-201ENST00000379599 TCERG1O14776 1098 aaKnown RBP11.23□□□□□ -0.61
NHLRC3-201ENST00000379599 CLCN1P35523 988 aa11.22□□□□□ -0.61
NHLRC3-201ENST00000379599 BACH2Q9BYV9 841 aa11.22□□□□□ -0.61
NHLRC3-201ENST00000379599 L1TD1Q5T7N2 865 aaKnown RBP11.22□□□□□ -0.61
NHLRC3-201ENST00000379599 ZHX1Q9UKY1 873 aaPredicted RBP11.2□□□□□ -0.62
NHLRC3-201ENST00000379599 GTF2E1P29083 439 aaPredicted RBP11.2□□□□□ -0.62
NHLRC3-201ENST00000379599 POGKQ9P215 609 aa11.2□□□□□ -0.62
NHLRC3-201ENST00000379599 CNGB1Q14028 1251 aaPredicted RBP11.18□□□□□ -0.62
NHLRC3-201ENST00000379599 AKNAQ7Z591 1439 aa11.17□□□□□ -0.62
NHLRC3-201ENST00000379599 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
NHLRC3-201ENST00000379599 CCDC184Q52MB2 194 aa11.17□□□□□ -0.62
NHLRC3-201ENST00000379599 ARID3AQ99856 593 aa11.17□□□□□ -0.62
NHLRC3-201ENST00000379599 CENPJQ9HC77 1338 aaPredicted RBP11.16□□□□□ -0.62
NHLRC3-201ENST00000379599 STAC3Q96MF2 364 aa11.16□□□□□ -0.62
NHLRC3-201ENST00000379599 MRS2Q9HD23 443 aa11.15□□□□□ -0.62
NHLRC3-201ENST00000379599 TPM2P07951 284 aa11.15□□□□□ -0.62
NHLRC3-201ENST00000379599 ZBED9Q6R2W3 1325 aa11.15□□□□□ -0.62
NHLRC3-201ENST00000379599 SENP3-EIF4A1A0A087X0R7 540 aa11.15□□□□□ -0.63
NHLRC3-201ENST00000379599 PLCD3Q8N3E9 789 aa11.14□□□□□ -0.63
NHLRC3-201ENST00000379599 IPO4Q8TEX9 1081 aaKnown RBP11.13□□□□□ -0.63
NHLRC3-201ENST00000379599 PRDM10Q9NQV6 1147 aa11.12□□□□□ -0.63
NHLRC3-201ENST00000379599 MS4A1P11836 297 aa11.12□□□□□ -0.63
NHLRC3-201ENST00000379599 ZNF326Q5BKZ1 582 aaKnown RBP11.11□□□□□ -0.63
NHLRC3-201ENST00000379599 AMER1Q5JTC6 1135 aaPredicted RBP11.11□□□□□ -0.63
NHLRC3-201ENST00000379599 PANK2Q9BZ23 570 aa11.11□□□□□ -0.63
NHLRC3-201ENST00000379599 GOLGA6L3A6NEY3 463 aa11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 XRCC6P12956 609 aaKnown RBP eCLIP11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 NCLP19338 710 aaKnown RBP11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 FAM13BQ9NYF5 915 aa11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 CECR2Q9BXF3 1484 aa11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 SOGA1O94964 1423 aa11.1□□□□□ -0.63
NHLRC3-201ENST00000379599 VGLL3A8MV65 326 aa11.09□□□□□ -0.63
NHLRC3-201ENST00000379599 ESPNB1AK53 854 aa11.09□□□□□ -0.63
NHLRC3-201ENST00000379599 ABCC8Q09428 1581 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 CLIP1P30622 1438 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 KIAA1211Q6ZU35 1233 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 GZF1Q9H116 711 aaPredicted RBP11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 NUDCQ9Y266 331 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 EXOC6Q8TAG9 804 aa11.08□□□□□ -0.64
NHLRC3-201ENST00000379599 NCAPD3P42695 1498 aa11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 FOXD1Q16676 465 aa11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 TRIM44Q96DX7 344 aaPredicted RBP11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 SMAP1Q8IYB5 467 aaPredicted RBP11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 VPS8Q8N3P4 1428 aa11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 RSPH4AQ5TD94 716 aa11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 DHX37Q8IY37 1157 aaKnown RBP11.06□□□□□ -0.64
NHLRC3-201ENST00000379599 ANP32BQ92688 251 aaKnown RBP11.05□□□□□ -0.64
NHLRC3-201ENST00000379599 TNNT2P45379 298 aaPredicted RBP11.04□□□□□ -0.64
NHLRC3-201ENST00000379599 CCDC88BA6NC98 1476 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms