RNA–Protein interactions for RNA: ENST00000377865.6

PCDH9-202, Transcript of protocadherin 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PCDH9, Length 5,709 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-202ENST00000377865 ERICH6BQ5W0A0 696 aa11.8□□□□□ -0.52
PCDH9-202ENST00000377865 NBR1Q14596 966 aa11.78□□□□□ -0.52
PCDH9-202ENST00000377865 TSHZ2Q9NRE2 1034 aa11.78□□□□□ -0.52
PCDH9-202ENST00000377865 IRX6P78412 446 aaPredicted RBP11.77□□□□□ -0.52
PCDH9-202ENST00000377865 TMC1Q8TDI8 760 aa11.77□□□□□ -0.52
PCDH9-202ENST00000377865 CANXP27824 592 aaKnown RBP11.77□□□□□ -0.53
PCDH9-202ENST00000377865 DDRGK1Q96HY6 314 aa11.77□□□□□ -0.53
PCDH9-202ENST00000377865 HIRIP3Q9BW71 556 aaPredicted RBP11.76□□□□□ -0.53
PCDH9-202ENST00000377865 DHX57Q6P158 1386 aaKnown RBP11.75□□□□□ -0.53
PCDH9-202ENST00000377865 RBM19Q9Y4C8 960 aaKnown RBP11.75□□□□□ -0.53
PCDH9-202ENST00000377865 ARHGAP35Q9NRY4 1499 aa11.75□□□□□ -0.53
PCDH9-202ENST00000377865 BCL11AQ9H165 835 aa11.74□□□□□ -0.53
PCDH9-202ENST00000377865 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.74□□□□□ -0.53
PCDH9-202ENST00000377865 RAB3GAP2Q9H2M9 1393 aa11.73□□□□□ -0.53
PCDH9-202ENST00000377865 KIF21BO75037 1637 aa11.73□□□□□ -0.53
PCDH9-202ENST00000377865 SLC4A1APQ9BWU0 796 aaKnown RBP11.73□□□□□ -0.53
PCDH9-202ENST00000377865 SIN3AQ96ST3 1273 aa11.73□□□□□ -0.53
PCDH9-202ENST00000377865 CHIC2Q9UKJ5 165 aa11.73□□□□□ -0.53
PCDH9-202ENST00000377865 NOP58Q9Y2X3 529 aaKnown RBP11.72□□□□□ -0.53
PCDH9-202ENST00000377865 RAPGEF2Q9Y4G8 1499 aa11.7□□□□□ -0.54
PCDH9-202ENST00000377865 UPF2Q9HAU5 1272 aaKnown RBP11.69□□□□□ -0.54
PCDH9-202ENST00000377865 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
PCDH9-202ENST00000377865 KANK4Q5T7N3 995 aaPredicted RBP11.68□□□□□ -0.54
PCDH9-202ENST00000377865 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
PCDH9-202ENST00000377865 CARMIL1Q5VZK9 1371 aa11.68□□□□□ -0.54
PCDH9-202ENST00000377865 CUX2O14529 1486 aa11.67□□□□□ -0.54
PCDH9-202ENST00000377865 RRP7BPQ9NSQ0 103 aa11.67□□□□□ -0.54
PCDH9-202ENST00000377865 RUSC2Q8N2Y8 1516 aa11.67□□□□□ -0.54
PCDH9-202ENST00000377865 ARID3CA6NKF2 412 aa11.66□□□□□ -0.54
PCDH9-202ENST00000377865 GLIPR1L2Q4G1C9 344 aa11.65□□□□□ -0.54
PCDH9-202ENST00000377865 WDR43Q15061 677 aaKnown RBP eCLIP11.63□□□□□ -0.55
PCDH9-202ENST00000377865 EIF5BO60841 1220 aaKnown RBP11.61□□□□□ -0.55
PCDH9-202ENST00000377865 PPP1R15AO75807 674 aaPredicted RBP11.61□□□□□ -0.55
PCDH9-202ENST00000377865 FMN1Q68DA7 1419 aa11.6□□□□□ -0.55
PCDH9-202ENST00000377865 DEKP35659 375 aaKnown RBP11.6□□□□□ -0.55
PCDH9-202ENST00000377865 ANP32BQ92688 251 aaKnown RBP11.6□□□□□ -0.55
PCDH9-202ENST00000377865 ERICH3Q5RHP9 1530 aa11.59□□□□□ -0.55
PCDH9-202ENST00000377865 HSPA5P11021 654 aaKnown RBP11.59□□□□□ -0.55
PCDH9-202ENST00000377865 BECN1Q14457 450 aa11.59□□□□□ -0.55
PCDH9-202ENST00000377865 NEFMP07197 916 aa11.57□□□□□ -0.56
PCDH9-202ENST00000377865 TSPY4P0CV99 314 aa11.57□□□□□ -0.56
PCDH9-202ENST00000377865 TSPY10P0CW01 314 aa11.57□□□□□ -0.56
PCDH9-202ENST00000377865 B4GALNT3Q6L9W6 998 aa11.57□□□□□ -0.56
PCDH9-202ENST00000377865 SALL2Q9Y467 1007 aaPredicted RBP11.57□□□□□ -0.56
PCDH9-202ENST00000377865 ATAD2BQ9ULI0 1458 aa11.56□□□□□ -0.56
PCDH9-202ENST00000377865 FBLN2P98095 1184 aa11.56□□□□□ -0.56
PCDH9-202ENST00000377865 FANCIQ9NVI1 1328 aa11.56□□□□□ -0.56
PCDH9-202ENST00000377865 RRBP1Q9P2E9 1410 aaKnown RBP11.54□□□□□ -0.56
PCDH9-202ENST00000377865 KDM2AQ9Y2K7 1162 aa11.53□□□□□ -0.56
PCDH9-202ENST00000377865 CARD11Q9BXL7 1154 aa11.52□□□□□ -0.56
PCDH9-202ENST00000377865 CDCA8Q53HL2 280 aa11.5□□□□□ -0.57
PCDH9-202ENST00000377865 HSP90AA1P07900 732 aaKnown RBP11.5□□□□□ -0.57
PCDH9-202ENST00000377865 TCERG1O14776 1098 aaKnown RBP11.49□□□□□ -0.57
PCDH9-202ENST00000377865 SYNJ1O43426 1573 aa11.49□□□□□ -0.57
PCDH9-202ENST00000377865 CCDC18Q5T9S5 1454 aa11.48□□□□□ -0.57
PCDH9-202ENST00000377865 EIF4G1Q04637 1599 aaKnown RBP11.48□□□□□ -0.57
PCDH9-202ENST00000377865 NUDCQ9Y266 331 aa11.48□□□□□ -0.57
PCDH9-202ENST00000377865 CFDP1Q9UEE9 299 aaPredicted RBP11.48□□□□□ -0.57
PCDH9-202ENST00000377865 IPO9Q96P70 1041 aaKnown RBP11.47□□□□□ -0.57
PCDH9-202ENST00000377865 LAS1LQ9Y4W2 734 aaKnown RBP11.47□□□□□ -0.57
PCDH9-202ENST00000377865 CUX1P39880 1505 aa11.47□□□□□ -0.57
PCDH9-202ENST00000377865 ROCK2O75116 1388 aaKnown RBP11.47□□□□□ -0.57
PCDH9-202ENST00000377865 KCNH8Q96L42 1107 aa11.46□□□□□ -0.58
PCDH9-202ENST00000377865 RALBP1Q15311 655 aa11.45□□□□□ -0.58
PCDH9-202ENST00000377865 ARAP1Q96P48 1450 aa11.45□□□□□ -0.58
PCDH9-202ENST00000377865 ZBED9Q6R2W3 1325 aa11.45□□□□□ -0.58
PCDH9-202ENST00000377865 MPHOSPH9Q99550 1183 aa11.44□□□□□ -0.58
PCDH9-202ENST00000377865 FHOD3Q2V2M9 1422 aa11.44□□□□□ -0.58
PCDH9-202ENST00000377865 TOP2BQ02880 1626 aa11.44□□□□□ -0.58
PCDH9-202ENST00000377865 LRRC9Q6ZRR7 1453 aa11.44□□□□□ -0.58
PCDH9-202ENST00000377865 PLEKHD1A6NEE1 506 aa11.43□□□□□ -0.58
PCDH9-202ENST00000377865 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.43□□□□□ -0.58
PCDH9-202ENST00000377865 KNSTRNQ9Y448 316 aa11.43□□□□□ -0.58
PCDH9-202ENST00000377865 KTN1Q86UP2 1357 aaKnown RBP11.43□□□□□ -0.58
PCDH9-202ENST00000377865 USP35Q9P2H5 1018 aa11.41□□□□□ -0.58
PCDH9-202ENST00000377865 UACAQ9BZF9 1416 aa11.41□□□□□ -0.58
PCDH9-202ENST00000377865 PDE3BQ13370 1112 aa11.4□□□□□ -0.58
PCDH9-202ENST00000377865 L1TD1Q5T7N2 865 aaKnown RBP11.4□□□□□ -0.58
PCDH9-202ENST00000377865 RCAN3Q9UKA8 241 aa11.4□□□□□ -0.58
PCDH9-202ENST00000377865 ARID4BQ4LE39 1312 aaPredicted RBP11.39□□□□□ -0.59
PCDH9-202ENST00000377865 CHMP7Q8WUX9 453 aaPredicted RBP11.39□□□□□ -0.59
PCDH9-202ENST00000377865 CNTLNQ9NXG0 1405 aa11.39□□□□□ -0.59
PCDH9-202ENST00000377865 TRIM44Q96DX7 344 aaPredicted RBP11.39□□□□□ -0.59
PCDH9-202ENST00000377865 PRXQ9BXM0 1461 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 TMF1P82094 1093 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 PHLDB1Q86UU1 1377 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 CADPSQ9ULU8 1353 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 SLC24A1O60721 1099 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 FGD6Q6ZV73 1430 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 KIF15Q9NS87 1388 aa11.38□□□□□ -0.59
PCDH9-202ENST00000377865 GOLGA6L22H0YM25 854 aa11.37□□□□□ -0.59
PCDH9-202ENST00000377865 FYCO1Q9BQS8 1478 aa11.37□□□□□ -0.59
PCDH9-202ENST00000377865 TIAM1Q13009 1591 aa11.37□□□□□ -0.59
PCDH9-202ENST00000377865 L3MBTL2Q969R5 705 aa11.36□□□□□ -0.59
PCDH9-202ENST00000377865 PRKRIP1Q9H875 184 aaPredicted RBP11.36□□□□□ -0.59
PCDH9-202ENST00000377865 CFAP53Q96M91 514 aa11.36□□□□□ -0.59
PCDH9-202ENST00000377865 CASKIN1Q8WXD9 1431 aa11.35□□□□□ -0.59
PCDH9-202ENST00000377865 MS4A1P11836 297 aa11.35□□□□□ -0.59
PCDH9-202ENST00000377865 MYH16Q9H6N6 1097 aa11.35□□□□□ -0.59
PCDH9-202ENST00000377865 ANKRD30AQ9BXX3 1397 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms