RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ZBTB47Q9UFB7 747 aaPredicted RBP6.55□□□□□ -1.36
PCDH9-201ENST00000377861 NCLP19338 710 aaKnown RBP6.55□□□□□ -1.36
PCDH9-201ENST00000377861 BECN1Q14457 450 aa6.54□□□□□ -1.36
PCDH9-201ENST00000377861 PDIA4P13667 645 aaKnown RBP6.53□□□□□ -1.36
PCDH9-201ENST00000377861 FAM50AQ14320 339 aaKnown RBP6.53□□□□□ -1.36
PCDH9-201ENST00000377861 ABCC8Q09428 1581 aa6.53□□□□□ -1.36
PCDH9-201ENST00000377861 PPP1R15AO75807 674 aaPredicted RBP6.52□□□□□ -1.37
PCDH9-201ENST00000377861 HDGFP51858 240 aaKnown RBP6.52□□□□□ -1.37
PCDH9-201ENST00000377861 TRIM52Q96A61 297 aa6.51□□□□□ -1.37
PCDH9-201ENST00000377861 AKNAQ7Z591 1439 aa6.51□□□□□ -1.37
PCDH9-201ENST00000377861 CHMP4CQ96CF2 233 aa6.51□□□□□ -1.37
PCDH9-201ENST00000377861 CEP162Q5TB80 1403 aa6.51□□□□□ -1.37
PCDH9-201ENST00000377861 TCERG1O14776 1098 aaKnown RBP6.51□□□□□ -1.37
PCDH9-201ENST00000377861 PLEKHD1A6NEE1 506 aa6.5□□□□□ -1.37
PCDH9-201ENST00000377861 ISY1Q9ULR0 285 aaKnown RBP6.5□□□□□ -1.37
PCDH9-201ENST00000377861 HDAC5Q9UQL6 1122 aa6.5□□□□□ -1.37
PCDH9-201ENST00000377861 VPS8Q8N3P4 1428 aa6.49□□□□□ -1.37
PCDH9-201ENST00000377861 FMN1Q68DA7 1419 aa6.48□□□□□ -1.37
PCDH9-201ENST00000377861 KLHL34Q8N239 644 aa6.48□□□□□ -1.37
PCDH9-201ENST00000377861 CALD1Q05682 793 aaKnown RBP6.48□□□□□ -1.37
PCDH9-201ENST00000377861 CCDC136Q96JN2 1154 aa6.47□□□□□ -1.37
PCDH9-201ENST00000377861 FANCIQ9NVI1 1328 aa6.47□□□□□ -1.37
PCDH9-201ENST00000377861 GOLGA6L22H0YM25 854 aa6.47□□□□□ -1.37
PCDH9-201ENST00000377861 MTUS2Q5JR59 1369 aa6.47□□□□□ -1.37
PCDH9-201ENST00000377861 ANO8Q9HCE9 1232 aaPredicted RBP6.46□□□□□ -1.37
PCDH9-201ENST00000377861 SETD5Q9C0A6 1442 aa6.46□□□□□ -1.38
PCDH9-201ENST00000377861 MIER1Q8N108 512 aa6.45□□□□□ -1.38
PCDH9-201ENST00000377861 NCBP3Q53F19 620 aaKnown RBP6.45□□□□□ -1.38
PCDH9-201ENST00000377861 CARMIL1Q5VZK9 1371 aa6.45□□□□□ -1.38
PCDH9-201ENST00000377861 BCL11AQ9H165 835 aa6.44□□□□□ -1.38
PCDH9-201ENST00000377861 SMARCA2P51531 1590 aa6.44□□□□□ -1.38
PCDH9-201ENST00000377861 IPO8O15397 1037 aaKnown RBP6.43□□□□□ -1.38
PCDH9-201ENST00000377861 DDX10Q13206 875 aaKnown RBP6.43□□□□□ -1.38
PCDH9-201ENST00000377861 WWC1Q8IX03 1113 aa6.43□□□□□ -1.38
PCDH9-201ENST00000377861 PRKCSHP14314 528 aaPredicted RBP6.43□□□□□ -1.38
PCDH9-201ENST00000377861 FKBP8Q14318 412 aa6.42□□□□□ -1.38
PCDH9-201ENST00000377861 PPARGC1BQ86YN6 1023 aaKnown RBP6.42□□□□□ -1.38
PCDH9-201ENST00000377861 HNRNPUQ00839 825 aaKnown RBP eCLIP6.42□□□□□ -1.38
PCDH9-201ENST00000377861 TNNT2P45379 298 aaPredicted RBP6.42□□□□□ -1.38
PCDH9-201ENST00000377861 SLC4A1APQ9BWU0 796 aaKnown RBP6.42□□□□□ -1.38
PCDH9-201ENST00000377861 CFAP53Q96M91 514 aa6.42□□□□□ -1.38
PCDH9-201ENST00000377861 ZNF428Q96B54 188 aa6.42□□□□□ -1.38
PCDH9-201ENST00000377861 BCL11BQ9C0K0 894 aaPredicted RBP6.42□□□□□ -1.38
PCDH9-201ENST00000377861 L1TD1Q5T7N2 865 aaKnown RBP6.41□□□□□ -1.38
PCDH9-201ENST00000377861 NUDCQ9Y266 331 aa6.41□□□□□ -1.38
PCDH9-201ENST00000377861 EHMT2Q96KQ7 1210 aa6.41□□□□□ -1.38
PCDH9-201ENST00000377861 CT47B1P0C2W7 299 aaPredicted RBP6.41□□□□□ -1.38
PCDH9-201ENST00000377861 KNSTRNQ9Y448 316 aa6.41□□□□□ -1.38
PCDH9-201ENST00000377861 SKOR2Q2VWA4 1001 aaPredicted RBP6.41□□□□□ -1.38
PCDH9-201ENST00000377861 DHX8Q14562 1220 aaKnown RBP6.4□□□□□ -1.38
PCDH9-201ENST00000377861 MRS2Q9HD23 443 aa6.4□□□□□ -1.38
PCDH9-201ENST00000377861 TRIM44Q96DX7 344 aaPredicted RBP6.4□□□□□ -1.39
PCDH9-201ENST00000377861 CASC1Q6TDU7 716 aa6.4□□□□□ -1.39
PCDH9-201ENST00000377861 MAP3K1Q13233 1512 aa6.4□□□□□ -1.39
PCDH9-201ENST00000377861 NCAPD3P42695 1498 aa6.4□□□□□ -1.39
PCDH9-201ENST00000377861 WDR43Q15061 677 aaKnown RBP eCLIP6.4□□□□□ -1.39
PCDH9-201ENST00000377861 SCRIBQ14160 1630 aa6.39□□□□□ -1.39
PCDH9-201ENST00000377861 MIA2Q96PC5 1412 aa6.39□□□□□ -1.39
PCDH9-201ENST00000377861 CFDP1Q9UEE9 299 aaPredicted RBP6.39□□□□□ -1.39
PCDH9-201ENST00000377861 NPM1P06748 294 aaKnown RBP eCLIP6.38□□□□□ -1.39
PCDH9-201ENST00000377861 ITGAEP38570 1179 aa6.38□□□□□ -1.39
PCDH9-201ENST00000377861 NLRP13Q86W25 1043 aa6.38□□□□□ -1.39
PCDH9-201ENST00000377861 CADPSQ9ULU8 1353 aa6.38□□□□□ -1.39
PCDH9-201ENST00000377861 CCDC18Q5T9S5 1454 aa6.38□□□□□ -1.39
PCDH9-201ENST00000377861 TMF1P82094 1093 aa6.38□□□□□ -1.39
PCDH9-201ENST00000377861 MTERF4Q7Z6M4 381 aaKnown RBP6.38□□□□□ -1.39
PCDH9-201ENST00000377861 PKNOX2Q96KN3 472 aa6.37□□□□□ -1.39
PCDH9-201ENST00000377861 PDS5BQ9NTI5 1447 aa6.37□□□□□ -1.39
PCDH9-201ENST00000377861 PUS7Q96PZ0 661 aaKnown RBP6.37□□□□□ -1.39
PCDH9-201ENST00000377861 RANGAP1P46060 587 aaPredicted RBP6.36□□□□□ -1.39
PCDH9-201ENST00000377861 INSRP06213 1382 aa6.36□□□□□ -1.39
PCDH9-201ENST00000377861 A0A0U1RQG5 324 aaPredicted RBP6.35□□□□□ -1.39
PCDH9-201ENST00000377861 ZBED9Q6R2W3 1325 aa6.35□□□□□ -1.39
PCDH9-201ENST00000377861 RSPH6AQ9H0K4 717 aa6.35□□□□□ -1.39
PCDH9-201ENST00000377861 CHMP7Q8WUX9 453 aaPredicted RBP6.35□□□□□ -1.39
PCDH9-201ENST00000377861 PMFBP1Q8TBY8 1022 aa6.35□□□□□ -1.39
PCDH9-201ENST00000377861 SUPT16HQ9Y5B9 1047 aaKnown RBP6.35□□□□□ -1.39
PCDH9-201ENST00000377861 AEBP2Q6ZN18 517 aaPredicted RBP6.34□□□□□ -1.39
PCDH9-201ENST00000377861 PABPN1Q86U42 306 aaKnown RBP eCLIP6.34□□□□□ -1.39
PCDH9-201ENST00000377861 MAPK8IP3Q9UPT6 1336 aa6.34□□□□□ -1.39
PCDH9-201ENST00000377861 PLEKHG5O94827 1062 aa6.34□□□□□ -1.39
PCDH9-201ENST00000377861 IPO9Q96P70 1041 aaKnown RBP6.34□□□□□ -1.39
PCDH9-201ENST00000377861 RWDD1Q9H446 243 aaPredicted RBP6.34□□□□□ -1.4
PCDH9-201ENST00000377861 ABCC9O60706 1549 aa6.33□□□□□ -1.4
PCDH9-201ENST00000377861 MYH16Q9H6N6 1097 aa6.33□□□□□ -1.4
PCDH9-201ENST00000377861 HMGB2P26583 209 aaKnown RBP6.33□□□□□ -1.4
PCDH9-201ENST00000377861 MPHOSPH9Q99550 1183 aa6.33□□□□□ -1.4
PCDH9-201ENST00000377861 ANKRD30AQ9BXX3 1397 aa6.33□□□□□ -1.4
PCDH9-201ENST00000377861 NRDCO43847 1150 aa6.33□□□□□ -1.4
PCDH9-201ENST00000377861 CANXP27824 592 aaKnown RBP6.32□□□□□ -1.4
PCDH9-201ENST00000377861 PPP6R1Q9UPN7 881 aa6.32□□□□□ -1.4
PCDH9-201ENST00000377861 HSP90AA1P07900 732 aaKnown RBP6.32□□□□□ -1.4
PCDH9-201ENST00000377861 CARMIL2Q6F5E8 1435 aa6.32□□□□□ -1.4
PCDH9-201ENST00000377861 CCDC88BA6NC98 1476 aa6.32□□□□□ -1.4
PCDH9-201ENST00000377861 IGF1RP08069 1367 aa6.32□□□□□ -1.4
PCDH9-201ENST00000377861 RBM19Q9Y4C8 960 aaKnown RBP6.32□□□□□ -1.4
PCDH9-201ENST00000377861 CGNL1Q0VF96 1302 aa6.32□□□□□ -1.4
PCDH9-201ENST00000377861 CENPQQ7L2Z9 268 aaPredicted RBP6.31□□□□□ -1.4
PCDH9-201ENST00000377861 EFCAB2Q5VUJ9 269 aa6.31□□□□□ -1.4
PCDH9-201ENST00000377861 CARD11Q9BXL7 1154 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms