RNA–Protein interactions for RNA: ENST00000375597.8

MCF2L-202, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,413 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-202ENST00000375597 FAM9BQ8IZU0 186 aa16.6■□□□□ 0.25
MCF2L-202ENST00000375597 ANP32EQ9BTT0 268 aa16.6■□□□□ 0.25
MCF2L-202ENST00000375597 RRP7BPQ9NSQ0 103 aa16.6■□□□□ 0.25
MCF2L-202ENST00000375597 NCAPD3P42695 1498 aa16.59■□□□□ 0.25
MCF2L-202ENST00000375597 TOP2BQ02880 1626 aa16.58■□□□□ 0.24
MCF2L-202ENST00000375597 FOXD1Q16676 465 aa16.58■□□□□ 0.24
MCF2L-202ENST00000375597 RBM19Q9Y4C8 960 aaKnown RBP16.55■□□□□ 0.24
MCF2L-202ENST00000375597 BIVM-ERCC5R4GMW8 1640 aa16.55■□□□□ 0.24
MCF2L-202ENST00000375597 TONSLQ96HA7 1378 aa16.53■□□□□ 0.24
MCF2L-202ENST00000375597 KIF27Q86VH2 1401 aa16.51■□□□□ 0.23
MCF2L-202ENST00000375597 CUX2O14529 1486 aa16.5■□□□□ 0.23
MCF2L-202ENST00000375597 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
MCF2L-202ENST00000375597 SALL2Q9Y467 1007 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-202ENST00000375597 PHLDB1Q86UU1 1377 aa16.48■□□□□ 0.23
MCF2L-202ENST00000375597 HMGXB3Q12766 1538 aa16.47■□□□□ 0.23
MCF2L-202ENST00000375597 CLSPNQ9HAW4 1339 aa16.45■□□□□ 0.22
MCF2L-202ENST00000375597 B4GALNT3Q6L9W6 998 aa16.45■□□□□ 0.22
MCF2L-202ENST00000375597 BCL11AQ9H165 835 aa16.44■□□□□ 0.22
MCF2L-202ENST00000375597 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
MCF2L-202ENST00000375597 FHOD3Q2V2M9 1422 aa16.43■□□□□ 0.22
MCF2L-202ENST00000375597 NBR1Q14596 966 aa16.43■□□□□ 0.22
MCF2L-202ENST00000375597 ARHGAP35Q9NRY4 1499 aa16.41■□□□□ 0.22
MCF2L-202ENST00000375597 CARMIL1Q5VZK9 1371 aa16.41■□□□□ 0.22
MCF2L-202ENST00000375597 WDR97A6NE52 1622 aa16.41■□□□□ 0.22
MCF2L-202ENST00000375597 PRXQ9BXM0 1461 aa16.41■□□□□ 0.22
MCF2L-202ENST00000375597 PPP1R15AO75807 674 aaPredicted RBP16.41■□□□□ 0.22
MCF2L-202ENST00000375597 CDK11AQ9UQ88 783 aaPredicted RBP16.41■□□□□ 0.22
MCF2L-202ENST00000375597 CC2D2AQ9P2K1 1620 aa16.41■□□□□ 0.22
MCF2L-202ENST00000375597 CCDC184Q52MB2 194 aa16.4■□□□□ 0.22
MCF2L-202ENST00000375597 MTUS2Q5JR59 1369 aa16.37■□□□□ 0.21
MCF2L-202ENST00000375597 MRS2Q9HD23 443 aa16.36■□□□□ 0.21
MCF2L-202ENST00000375597 CFTRP13569 1480 aa16.34■□□□□ 0.21
MCF2L-202ENST00000375597 CUX1P39880 1505 aa16.34■□□□□ 0.21
MCF2L-202ENST00000375597 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
MCF2L-202ENST00000375597 ZNF777Q9ULD5 760 aaPredicted RBP16.33■□□□□ 0.21
MCF2L-202ENST00000375597 HSPA5P11021 654 aaKnown RBP16.33■□□□□ 0.2
MCF2L-202ENST00000375597 IGF1RP08069 1367 aa16.33■□□□□ 0.2
MCF2L-202ENST00000375597 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
MCF2L-202ENST00000375597 RRBP1Q9P2E9 1410 aaKnown RBP16.32■□□□□ 0.2
MCF2L-202ENST00000375597 NPM2Q86SE8 214 aaKnown RBP16.31■□□□□ 0.2
MCF2L-202ENST00000375597 MSH5O43196 834 aa16.31■□□□□ 0.2
MCF2L-202ENST00000375597 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
MCF2L-202ENST00000375597 MAPKBP1O60336 1514 aa16.26■□□□□ 0.19
MCF2L-202ENST00000375597 TDRD9Q8NDG6 1382 aaKnown RBP16.26■□□□□ 0.19
MCF2L-202ENST00000375597 RAD54L2Q9Y4B4 1467 aa16.24■□□□□ 0.19
MCF2L-202ENST00000375597 KDM2AQ9Y2K7 1162 aa16.23■□□□□ 0.19
MCF2L-202ENST00000375597 EIF4G2P78344 907 aaKnown RBP eCLIP16.22■□□□□ 0.19
MCF2L-202ENST00000375597 FBLN2P98095 1184 aa16.22■□□□□ 0.19
MCF2L-202ENST00000375597 LRRC9Q6ZRR7 1453 aa16.21■□□□□ 0.18
MCF2L-202ENST00000375597 L3MBTL2Q969R5 705 aa16.2■□□□□ 0.18
MCF2L-202ENST00000375597 NESP48681 1621 aa16.2■□□□□ 0.18
MCF2L-202ENST00000375597 C11orf95C9JLR9 678 aaPredicted RBP16.19■□□□□ 0.18
MCF2L-202ENST00000375597 WASHC2AQ641Q2 1341 aa16.19■□□□□ 0.18
MCF2L-202ENST00000375597 CCER2I3L3R5 266 aa16.18■□□□□ 0.18
MCF2L-202ENST00000375597 SLC4A1APQ9BWU0 796 aaKnown RBP16.16■□□□□ 0.18
MCF2L-202ENST00000375597 FGD5Q6ZNL6 1462 aa16.16■□□□□ 0.18
MCF2L-202ENST00000375597 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
MCF2L-202ENST00000375597 CCDC136Q96JN2 1154 aa16.13■□□□□ 0.17
MCF2L-202ENST00000375597 ZNF644Q9H582 1327 aaPredicted RBP16.12■□□□□ 0.17
MCF2L-202ENST00000375597 CCDC18Q5T9S5 1454 aa16.11■□□□□ 0.17
MCF2L-202ENST00000375597 RTN4Q9NQC3 1192 aaKnown RBP16.11■□□□□ 0.17
MCF2L-202ENST00000375597 MAP3K1Q13233 1512 aa16.11■□□□□ 0.17
MCF2L-202ENST00000375597 FHAD1B1AJZ9 1412 aa16.11■□□□□ 0.17
MCF2L-202ENST00000375597 MPHOSPH9Q99550 1183 aa16.1■□□□□ 0.17
MCF2L-202ENST00000375597 TIAM1Q13009 1591 aa16.1■□□□□ 0.17
MCF2L-202ENST00000375597 PTPRKQ15262 1439 aa16.09■□□□□ 0.17
MCF2L-202ENST00000375597 AQRO60306 1485 aaKnown RBP eCLIP16.07■□□□□ 0.162e-6■■□□□ 12.9
MCF2L-202ENST00000375597 PPP4R2Q9NY27 417 aa16.07■□□□□ 0.16
MCF2L-202ENST00000375597 NBPF8Q3BBV2 869 aa16.06■□□□□ 0.16
MCF2L-202ENST00000375597 PAK3O75914 559 aaPredicted RBP16.06■□□□□ 0.16
MCF2L-202ENST00000375597 SKAP1Q86WV1 359 aa16.05■□□□□ 0.16
MCF2L-202ENST00000375597 TMC1Q8TDI8 760 aa16.05■□□□□ 0.16
MCF2L-202ENST00000375597 PRKRIP1Q9H875 184 aaPredicted RBP16.05■□□□□ 0.16
MCF2L-202ENST00000375597 LAS1LQ9Y4W2 734 aaKnown RBP16.05■□□□□ 0.16
MCF2L-202ENST00000375597 PCF11O94913 1555 aaKnown RBP16.04■□□□□ 0.16
MCF2L-202ENST00000375597 FGD6Q6ZV73 1430 aa16.04■□□□□ 0.16
MCF2L-202ENST00000375597 RGL3Q3MIN7 710 aa16.04■□□□□ 0.16
MCF2L-202ENST00000375597 DEKP35659 375 aaKnown RBP16.04■□□□□ 0.16
MCF2L-202ENST00000375597 CFAP43Q8NDM7 1665 aa16.01■□□□□ 0.15
MCF2L-202ENST00000375597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.157e-7■■□□□ 14.3
MCF2L-202ENST00000375597 AKNAQ7Z591 1439 aa15.99■□□□□ 0.15
MCF2L-202ENST00000375597 RTL5Q5HYW3 569 aaPredicted RBP15.99■□□□□ 0.15
MCF2L-202ENST00000375597 SENP3Q9H4L4 574 aaPredicted RBP15.98■□□□□ 0.15
MCF2L-202ENST00000375597 TIMELESSQ9UNS1 1208 aa15.98■□□□□ 0.15
MCF2L-202ENST00000375597 ANP32AP39687 249 aaKnown RBP15.96■□□□□ 0.15
MCF2L-202ENST00000375597 PDS5BQ9NTI5 1447 aa15.96■□□□□ 0.15
MCF2L-202ENST00000375597 KIF7Q2M1P5 1343 aa15.95■□□□□ 0.14
MCF2L-202ENST00000375597 TOPBP1Q92547 1522 aa15.95■□□□□ 0.14
MCF2L-202ENST00000375597 NOP58Q9Y2X3 529 aaKnown RBP15.95■□□□□ 0.14
MCF2L-202ENST00000375597 PLIN1O60240 522 aa15.94■□□□□ 0.14
MCF2L-202ENST00000375597 POLA1P09884 1462 aaPredicted RBP15.93■□□□□ 0.14
MCF2L-202ENST00000375597 FMN1Q68DA7 1419 aa15.93■□□□□ 0.14
MCF2L-202ENST00000375597 CC2D1BQ5T0F9 858 aaKnown RBP15.93■□□□□ 0.14
MCF2L-202ENST00000375597 NAIPQ13075 1403 aa15.92■□□□□ 0.14
MCF2L-202ENST00000375597 NCOA2Q15596 1464 aa15.92■□□□□ 0.14
MCF2L-202ENST00000375597 UACAQ9BZF9 1416 aa15.92■□□□□ 0.14
MCF2L-202ENST00000375597 PKD2Q13563 968 aa15.92■□□□□ 0.14
MCF2L-202ENST00000375597 CARD11Q9BXL7 1154 aa15.92■□□□□ 0.14
MCF2L-202ENST00000375597 ZBTB47Q9UFB7 747 aaPredicted RBP15.91■□□□□ 0.14
MCF2L-202ENST00000375597 LAMC3Q9Y6N6 1575 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms