RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 L1TD1Q5T7N2 865 aaKnown RBP13.39□□□□□ -0.27
PTCH1-204ENST00000375290 MYH16Q9H6N6 1097 aa13.39□□□□□ -0.27
PTCH1-204ENST00000375290 NOP58Q9Y2X3 529 aaKnown RBP13.38□□□□□ -0.27
PTCH1-204ENST00000375290 ZNF326Q5BKZ1 582 aaKnown RBP13.38□□□□□ -0.27
PTCH1-204ENST00000375290 MS4A1P11836 297 aa13.38□□□□□ -0.27
PTCH1-204ENST00000375290 BAZ1AQ9NRL2 1556 aaPredicted RBP13.37□□□□□ -0.27
PTCH1-204ENST00000375290 USP35Q9P2H5 1018 aa13.36□□□□□ -0.27
PTCH1-204ENST00000375290 MTUS2Q5JR59 1369 aa13.36□□□□□ -0.27
PTCH1-204ENST00000375290 ABCC9O60706 1549 aa13.33□□□□□ -0.27
PTCH1-204ENST00000375290 NBR1Q14596 966 aa13.33□□□□□ -0.28
PTCH1-204ENST00000375290 FAM9BQ8IZU0 186 aa13.32□□□□□ -0.28
PTCH1-204ENST00000375290 CNGB1Q14028 1251 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-204ENST00000375290 CASC1Q6TDU7 716 aa13.31□□□□□ -0.28
PTCH1-204ENST00000375290 MYO15BQ96JP2 1530 aa13.3□□□□□ -0.28
PTCH1-204ENST00000375290 SUPT16HQ9Y5B9 1047 aaKnown RBP13.29□□□□□ -0.28
PTCH1-204ENST00000375290 WRNQ14191 1432 aaPredicted RBP eCLIP13.29□□□□□ -0.28
PTCH1-204ENST00000375290 KIF27Q86VH2 1401 aa13.29□□□□□ -0.28
PTCH1-204ENST00000375290 NRDCO43847 1150 aa13.26□□□□□ -0.29
PTCH1-204ENST00000375290 GOLGA6L6A8MZA4 724 aa13.25□□□□□ -0.29
PTCH1-204ENST00000375290 CHAF1AQ13111 956 aaPredicted RBP13.23□□□□□ -0.29
PTCH1-204ENST00000375290 BCL11AQ9H165 835 aa13.23□□□□□ -0.29
PTCH1-204ENST00000375290 VPS8Q8N3P4 1428 aa13.23□□□□□ -0.29
PTCH1-204ENST00000375290 TSPY4P0CV99 314 aa13.23□□□□□ -0.29
PTCH1-204ENST00000375290 TSPY10P0CW01 314 aa13.23□□□□□ -0.29
PTCH1-204ENST00000375290 HAP1P54257 671 aaPredicted RBP13.22□□□□□ -0.29
PTCH1-204ENST00000375290 CCNB3Q8WWL7 1395 aa13.22□□□□□ -0.29
PTCH1-204ENST00000375290 PHLDB1Q86UU1 1377 aa13.19□□□□□ -0.3
PTCH1-204ENST00000375290 CFAP53Q96M91 514 aa13.19□□□□□ -0.3
PTCH1-204ENST00000375290 PNNQ9H307 717 aaKnown RBP13.19□□□□□ -0.3
PTCH1-204ENST00000375290 TCERG1O14776 1098 aaKnown RBP13.18□□□□□ -0.3
PTCH1-204ENST00000375290 CDK11BP21127 795 aaKnown RBP13.17□□□□□ -0.3
PTCH1-204ENST00000375290 ROCK2O75116 1388 aaKnown RBP13.17□□□□□ -0.3
PTCH1-204ENST00000375290 BAZ1BQ9UIG0 1483 aaKnown RBP13.17□□□□□ -0.3
PTCH1-204ENST00000375290 ZRSR1Q15695 479 aaKnown RBP13.16□□□□□ -0.3
PTCH1-204ENST00000375290 RSPH6AQ9H0K4 717 aa13.16□□□□□ -0.3
PTCH1-204ENST00000375290 MSNP26038 577 aaKnown RBP13.15□□□□□ -0.3
PTCH1-204ENST00000375290 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
PTCH1-204ENST00000375290 KNSTRNQ9Y448 316 aa13.13□□□□□ -0.31
PTCH1-204ENST00000375290 PTMAP06454 111 aaKnown RBP13.12□□□□□ -0.31
PTCH1-204ENST00000375290 SETD5Q9C0A6 1442 aa13.12□□□□□ -0.31
PTCH1-204ENST00000375290 NAP1L5Q96NT1 182 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-204ENST00000375290 DEKP35659 375 aaKnown RBP13.1□□□□□ -0.31
PTCH1-204ENST00000375290 ARHGAP35Q9NRY4 1499 aa13.09□□□□□ -0.31
PTCH1-204ENST00000375290 PDE3BQ13370 1112 aa13.09□□□□□ -0.31
PTCH1-204ENST00000375290 DNTTIP2Q5QJE6 756 aaKnown RBP13.09□□□□□ -0.31
PTCH1-204ENST00000375290 FANCIQ9NVI1 1328 aa13.09□□□□□ -0.31
PTCH1-204ENST00000375290 GBP4Q96PP9 640 aa13.09□□□□□ -0.31
PTCH1-204ENST00000375290 HSCBQ8IWL3 235 aa13.07□□□□□ -0.32
PTCH1-204ENST00000375290 SYAP1Q96A49 352 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-204ENST00000375290 RALBP1Q15311 655 aa13.07□□□□□ -0.32
PTCH1-204ENST00000375290 FTSJ3Q8IY81 847 aaKnown RBP13.07□□□□□ -0.32
PTCH1-204ENST00000375290 IPO9Q96P70 1041 aaKnown RBP13.07□□□□□ -0.32
PTCH1-204ENST00000375290 ZNF777Q9ULD5 760 aaPredicted RBP13.05□□□□□ -0.32
PTCH1-204ENST00000375290 NUDCQ9Y266 331 aa13.05□□□□□ -0.32
PTCH1-204ENST00000375290 CHMP4AQ9BY43 222 aa13.04□□□□□ -0.32
PTCH1-204ENST00000375290 NGEFQ8N5V2 710 aa13.04□□□□□ -0.32
PTCH1-204ENST00000375290 FMN1Q68DA7 1419 aa13.04□□□□□ -0.32
PTCH1-204ENST00000375290 MCCP23508 829 aa13.02□□□□□ -0.32
PTCH1-204ENST00000375290 SMARCA2P51531 1590 aa13.02□□□□□ -0.33
PTCH1-204ENST00000375290 AAMPQ13685 434 aa13.01□□□□□ -0.33
PTCH1-204ENST00000375290 KIAA2012Q0VF49 1180 aa13□□□□□ -0.33
PTCH1-204ENST00000375290 KTN1Q86UP2 1357 aaKnown RBP13□□□□□ -0.33
PTCH1-204ENST00000375290 PABPN1Q86U42 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTCH1-204ENST00000375290 CARD11Q9BXL7 1154 aa12.99□□□□□ -0.33
PTCH1-204ENST00000375290 MTERF4Q7Z6M4 381 aaKnown RBP12.99□□□□□ -0.33
PTCH1-204ENST00000375290 P3H3Q8IVL6 736 aa12.99□□□□□ -0.33
PTCH1-204ENST00000375290 PHF14O94880 888 aa12.98□□□□□ -0.33
PTCH1-204ENST00000375290 HTATSF1O43719 755 aaKnown RBP12.98□□□□□ -0.33
PTCH1-204ENST00000375290 CALD1Q05682 793 aaKnown RBP12.98□□□□□ -0.33
PTCH1-204ENST00000375290 HSP90AB1P08238 724 aaKnown RBP12.97□□□□□ -0.33
PTCH1-204ENST00000375290 SKOR2Q2VWA4 1001 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-204ENST00000375290 ESF1Q9H501 851 aaKnown RBP12.97□□□□□ -0.33
PTCH1-204ENST00000375290 MAPK8IP3Q9UPT6 1336 aa12.96□□□□□ -0.33
PTCH1-204ENST00000375290 DDX11L8A8MPP1 907 aa12.96□□□□□ -0.33
PTCH1-204ENST00000375290 EIF3AQ14152 1382 aaKnown RBP12.96□□□□□ -0.33
PTCH1-204ENST00000375290 IPO8O15397 1037 aaKnown RBP12.96□□□□□ -0.34
PTCH1-204ENST00000375290 CSPP1Q1MSJ5 1256 aa12.96□□□□□ -0.34
PTCH1-204ENST00000375290 TOP2AP11388 1531 aaKnown RBP12.96□□□□□ -0.34
PTCH1-204ENST00000375290 TMF1P82094 1093 aa12.95□□□□□ -0.34
PTCH1-204ENST00000375290 PMFBP1Q8TBY8 1022 aa12.95□□□□□ -0.34
PTCH1-204ENST00000375290 GOLGA6L3A6NEY3 463 aa12.94□□□□□ -0.34
PTCH1-204ENST00000375290 TSHZ2Q9NRE2 1034 aa12.93□□□□□ -0.34
PTCH1-204ENST00000375290 PLEKHD1A6NEE1 506 aa12.93□□□□□ -0.34
PTCH1-204ENST00000375290 RWDD1Q9H446 243 aaPredicted RBP12.92□□□□□ -0.34
PTCH1-204ENST00000375290 ZBED9Q6R2W3 1325 aa12.92□□□□□ -0.34
PTCH1-204ENST00000375290 CHMP4CQ96CF2 233 aa12.92□□□□□ -0.34
PTCH1-204ENST00000375290 MAP7D2Q96T17 732 aa12.9□□□□□ -0.34
PTCH1-204ENST00000375290 HDAC5Q9UQL6 1122 aa12.9□□□□□ -0.34
PTCH1-204ENST00000375290 STAG3Q9UJ98 1225 aa12.9□□□□□ -0.34
PTCH1-204ENST00000375290 IRX6P78412 446 aaPredicted RBP12.9□□□□□ -0.34
PTCH1-204ENST00000375290 FBLN2P98095 1184 aa12.89□□□□□ -0.35
PTCH1-204ENST00000375290 CFDP1Q9UEE9 299 aaPredicted RBP12.89□□□□□ -0.35
PTCH1-204ENST00000375290 ISY1Q9ULR0 285 aaKnown RBP12.89□□□□□ -0.35
PTCH1-204ENST00000375290 NPM1P06748 294 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTCH1-204ENST00000375290 CCDC34Q96HJ3 373 aa12.89□□□□□ -0.35
PTCH1-204ENST00000375290 CHIC2Q9UKJ5 165 aa12.89□□□□□ -0.35
PTCH1-204ENST00000375290 RCAN3Q9UKA8 241 aa12.88□□□□□ -0.35
PTCH1-204ENST00000375290 GSE1Q14687 1217 aa12.88□□□□□ -0.35
PTCH1-204ENST00000375290 GOLGA6L4A6NEF3 574 aa12.88□□□□□ -0.35
PTCH1-204ENST00000375290 KANK1Q14678 1352 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms