RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 RRP7BPQ9NSQ0 103 aa23.57■■□□□ 1.36
PTPRU-202ENST00000373779 ANP32EQ9BTT0 268 aa23.57■■□□□ 1.36
PTPRU-202ENST00000373779 TMC1Q8TDI8 760 aa23.57■■□□□ 1.36
PTPRU-202ENST00000373779 SALL2Q9Y467 1007 aaPredicted RBP23.47■■□□□ 1.35
PTPRU-202ENST00000373779 KANK4Q5T7N3 995 aaPredicted RBP23.46■■□□□ 1.35
PTPRU-202ENST00000373779 ZBTB47Q9UFB7 747 aaPredicted RBP23.46■■□□□ 1.35
PTPRU-202ENST00000373779 NBR1Q14596 966 aa23.44■■□□□ 1.34
PTPRU-202ENST00000373779 FHAD1B1AJZ9 1412 aa23.44■■□□□ 1.34
PTPRU-202ENST00000373779 TIMELESSQ9UNS1 1208 aa23.42■■□□□ 1.34
PTPRU-202ENST00000373779 SETD5Q9C0A6 1442 aa23.41■■□□□ 1.34
PTPRU-202ENST00000373779 KDM2AQ9Y2K7 1162 aa23.37■■□□□ 1.33
PTPRU-202ENST00000373779 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
PTPRU-202ENST00000373779 CUX2O14529 1486 aa23.36■■□□□ 1.33
PTPRU-202ENST00000373779 CCER2I3L3R5 266 aa23.35■■□□□ 1.33
PTPRU-202ENST00000373779 TSPY4P0CV99 314 aa23.34■■□□□ 1.33
PTPRU-202ENST00000373779 TSPY10P0CW01 314 aa23.34■■□□□ 1.33
PTPRU-202ENST00000373779 RAB3GAP2Q9H2M9 1393 aa23.31■■□□□ 1.32
PTPRU-202ENST00000373779 RUSC2Q8N2Y8 1516 aa23.31■■□□□ 1.32
PTPRU-202ENST00000373779 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
PTPRU-202ENST00000373779 PPP4R2Q9NY27 417 aa23.29■■□□□ 1.32
PTPRU-202ENST00000373779 SMARCA4P51532 1647 aa23.28■■□□□ 1.32
PTPRU-202ENST00000373779 RAPGEF2Q9Y4G8 1499 aa23.28■■□□□ 1.32
PTPRU-202ENST00000373779 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.27■■□□□ 1.32
PTPRU-202ENST00000373779 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.26■■□□□ 1.31
PTPRU-202ENST00000373779 ARHGAP35Q9NRY4 1499 aa23.25■■□□□ 1.31
PTPRU-202ENST00000373779 WDR43Q15061 677 aaKnown RBP eCLIP23.24■■□□□ 1.31
PTPRU-202ENST00000373779 NEFMP07197 916 aa23.22■■□□□ 1.31
PTPRU-202ENST00000373779 DHX57Q6P158 1386 aaKnown RBP23.21■■□□□ 1.31
PTPRU-202ENST00000373779 UPF2Q9HAU5 1272 aaKnown RBP23.18■■□□□ 1.3
PTPRU-202ENST00000373779 CHMP7Q8WUX9 453 aaPredicted RBP23.16■■□□□ 1.3
PTPRU-202ENST00000373779 RBM19Q9Y4C8 960 aaKnown RBP23.16■■□□□ 1.3
PTPRU-202ENST00000373779 TSHZ2Q9NRE2 1034 aa23.14■■□□□ 1.3
PTPRU-202ENST00000373779 CFDP1Q9UEE9 299 aaPredicted RBP23.14■■□□□ 1.29
PTPRU-202ENST00000373779 SENP3-EIF4A1A0A087X0R7 540 aa23.13■■□□□ 1.29
PTPRU-202ENST00000373779 BCL11AQ9H165 835 aa23.12■■□□□ 1.29
PTPRU-202ENST00000373779 CARD11Q9BXL7 1154 aa23.11■■□□□ 1.29
PTPRU-202ENST00000373779 HSPA5P11021 654 aaKnown RBP23.1■■□□□ 1.29
PTPRU-202ENST00000373779 CHGAP10645 457 aaKnown RBP23.1■■□□□ 1.29
PTPRU-202ENST00000373779 B4GALNT3Q6L9W6 998 aa23.09■■□□□ 1.29
PTPRU-202ENST00000373779 PPP1R15AO75807 674 aaPredicted RBP23.08■■□□□ 1.29
PTPRU-202ENST00000373779 PLEKHD1A6NEE1 506 aa23.08■■□□□ 1.28
PTPRU-202ENST00000373779 DDRGK1Q96HY6 314 aa23.08■■□□□ 1.28
PTPRU-202ENST00000373779 EIF5BO60841 1220 aaKnown RBP23.04■■□□□ 1.28
PTPRU-202ENST00000373779 NOP58Q9Y2X3 529 aaKnown RBP23.04■■□□□ 1.28
PTPRU-202ENST00000373779 ATAD2BQ9ULI0 1458 aa23.04■■□□□ 1.28
PTPRU-202ENST00000373779 RGL3Q3MIN7 710 aa23.02■■□□□ 1.28
PTPRU-202ENST00000373779 EIF4G1Q04637 1599 aaKnown RBP23.02■■□□□ 1.28
PTPRU-202ENST00000373779 FMN1Q68DA7 1419 aa23■■□□□ 1.27
PTPRU-202ENST00000373779 ERICH6BQ5W0A0 696 aa22.99■■□□□ 1.27
PTPRU-202ENST00000373779 HSP90AA1P07900 732 aaKnown RBP22.98■■□□□ 1.27
PTPRU-202ENST00000373779 KCNH8Q96L42 1107 aa22.95■■□□□ 1.27
PTPRU-202ENST00000373779 FHOD3Q2V2M9 1422 aa22.91■■□□□ 1.26
PTPRU-202ENST00000373779 KNSTRNQ9Y448 316 aa22.91■■□□□ 1.26
PTPRU-202ENST00000373779 PPM1GO15355 546 aaPredicted RBP22.9■■□□□ 1.26
PTPRU-202ENST00000373779 ANP32BQ92688 251 aaKnown RBP22.9■■□□□ 1.26
PTPRU-202ENST00000373779 KIF21BO75037 1637 aa22.9■■□□□ 1.26
PTPRU-202ENST00000373779 FOXD1Q16676 465 aa22.89■■□□□ 1.26
PTPRU-202ENST00000373779 MPHOSPH9Q99550 1183 aa22.89■■□□□ 1.25
PTPRU-202ENST00000373779 CDCA8Q53HL2 280 aa22.88■■□□□ 1.25
PTPRU-202ENST00000373779 SLC24A1O60721 1099 aa22.86■■□□□ 1.25
PTPRU-202ENST00000373779 BECN1Q14457 450 aa22.85■■□□□ 1.25
PTPRU-202ENST00000373779 LAS1LQ9Y4W2 734 aaKnown RBP22.84■■□□□ 1.25
PTPRU-202ENST00000373779 DCAF11Q8TEB1 546 aa22.82■■□□□ 1.24
PTPRU-202ENST00000373779 ARXQ96QS3 562 aa22.82■■□□□ 1.24
PTPRU-202ENST00000373779 CC2D1BQ5T0F9 858 aaKnown RBP22.82■■□□□ 1.24
PTPRU-202ENST00000373779 CADPSQ9ULU8 1353 aa22.79■■□□□ 1.24
PTPRU-202ENST00000373779 STAG3Q9UJ98 1225 aa22.79■■□□□ 1.24
PTPRU-202ENST00000373779 L3MBTL2Q969R5 705 aa22.78■■□□□ 1.24
PTPRU-202ENST00000373779 DEKP35659 375 aaKnown RBP22.77■■□□□ 1.24
PTPRU-202ENST00000373779 PKD2Q13563 968 aa22.77■■□□□ 1.24
PTPRU-202ENST00000373779 TDRD9Q8NDG6 1382 aaKnown RBP22.76■■□□□ 1.23
PTPRU-202ENST00000373779 NPM1P06748 294 aaKnown RBP eCLIP22.75■■□□□ 1.23
PTPRU-202ENST00000373779 TMF1P82094 1093 aa22.72■■□□□ 1.23
PTPRU-202ENST00000373779 RGS3P49796 1198 aa22.71■■□□□ 1.23
PTPRU-202ENST00000373779 CCDC18Q5T9S5 1454 aa22.71■■□□□ 1.23
PTPRU-202ENST00000373779 NUDCQ9Y266 331 aa22.7■■□□□ 1.22
PTPRU-202ENST00000373779 SYNJ1O43426 1573 aa22.69■■□□□ 1.22
PTPRU-202ENST00000373779 CFAP53Q96M91 514 aa22.69■■□□□ 1.22
PTPRU-202ENST00000373779 KTN1Q86UP2 1357 aaKnown RBP22.69■■□□□ 1.22
PTPRU-202ENST00000373779 RALBP1Q15311 655 aa22.67■■□□□ 1.22
PTPRU-202ENST00000373779 ERICH3Q5RHP9 1530 aa22.65■■□□□ 1.22
PTPRU-202ENST00000373779 RCAN3Q9UKA8 241 aa22.65■■□□□ 1.22
PTPRU-202ENST00000373779 RRBP1Q9P2E9 1410 aaKnown RBP22.64■■□□□ 1.22
PTPRU-202ENST00000373779 MYH16Q9H6N6 1097 aa22.64■■□□□ 1.22
PTPRU-202ENST00000373779 IGF1RP08069 1367 aa22.64■■□□□ 1.21
PTPRU-202ENST00000373779 GLIPR1L2Q4G1C9 344 aa22.64■■□□□ 1.21
PTPRU-202ENST00000373779 PDS5BQ9NTI5 1447 aa22.63■■□□□ 1.21
PTPRU-202ENST00000373779 NEUROD2Q15784 382 aa22.62■■□□□ 1.21
PTPRU-202ENST00000373779 ANKRD30AQ9BXX3 1397 aa22.61■■□□□ 1.21
PTPRU-202ENST00000373779 ESF1Q9H501 851 aaKnown RBP22.61■■□□□ 1.21
PTPRU-202ENST00000373779 ROCK2O75116 1388 aaKnown RBP22.61■■□□□ 1.21
PTPRU-202ENST00000373779 PHLDB1Q86UU1 1377 aa22.61■■□□□ 1.21
PTPRU-202ENST00000373779 NUP155O75694 1391 aa22.6■■□□□ 1.21
PTPRU-202ENST00000373779 LRRC9Q6ZRR7 1453 aa22.6■■□□□ 1.21
PTPRU-202ENST00000373779 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
PTPRU-202ENST00000373779 TCERG1O14776 1098 aaKnown RBP22.6■■□□□ 1.21
PTPRU-202ENST00000373779 FTSJ3Q8IY81 847 aaKnown RBP22.6■■□□□ 1.21
PTPRU-202ENST00000373779 RTN4Q9NQC3 1192 aaKnown RBP22.6■■□□□ 1.21
PTPRU-202ENST00000373779 PRKRIP1Q9H875 184 aaPredicted RBP22.59■■□□□ 1.21
PTPRU-202ENST00000373779 FRAT1Q92837 279 aaPredicted RBP22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms