RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 LOC105371045A0A1W2PR82 267 aa22.68■■□□□ 1.22
LDB3-204ENST00000372066 IGF1RP08069 1367 aa22.67■■□□□ 1.22
LDB3-204ENST00000372066 NPM1P06748 294 aaKnown RBP eCLIP22.66■■□□□ 1.22
LDB3-204ENST00000372066 KIF27Q86VH2 1401 aa22.63■■□□□ 1.21
LDB3-204ENST00000372066 RUSC2Q8N2Y8 1516 aa22.59■■□□□ 1.21
LDB3-204ENST00000372066 FAM69CQ0P6D2 419 aa22.59■■□□□ 1.21
LDB3-204ENST00000372066 KIAA0586Q9BVV6 1533 aa22.57■■□□□ 1.2
LDB3-204ENST00000372066 CARMIL1Q5VZK9 1371 aa22.51■■□□□ 1.19
LDB3-204ENST00000372066 EEA1Q15075 1411 aa22.51■■□□□ 1.19
LDB3-204ENST00000372066 TTBK1Q5TCY1 1321 aaPredicted RBP22.49■■□□□ 1.19
LDB3-204ENST00000372066 ABCC10Q5T3U5 1492 aa22.48■■□□□ 1.19
LDB3-204ENST00000372066 CUL7Q14999 1698 aa22.47■■□□□ 1.19
LDB3-204ENST00000372066 FAM9AQ8IZU1 332 aaPredicted RBP22.45■■□□□ 1.18
LDB3-204ENST00000372066 PTPRGP23470 1445 aa22.45■■□□□ 1.18
LDB3-204ENST00000372066 KIF13AQ9H1H9 1805 aa22.44■■□□□ 1.18
LDB3-204ENST00000372066 MAPKBP1O60336 1514 aa22.43■■□□□ 1.18
LDB3-204ENST00000372066 ADCY10Q96PN6 1610 aa22.43■■□□□ 1.18
LDB3-204ENST00000372066 CARMIL2Q6F5E8 1435 aa22.39■■□□□ 1.17
LDB3-204ENST00000372066 TNIKQ9UKE5 1360 aa22.38■■□□□ 1.17
LDB3-204ENST00000372066 DIP2BQ9P265 1576 aa22.35■■□□□ 1.17
LDB3-204ENST00000372066 IQGAP2Q13576 1575 aa22.27■■□□□ 1.16
LDB3-204ENST00000372066 ABCC2Q92887 1545 aa22.27■■□□□ 1.16
LDB3-204ENST00000372066 RAPGEF2Q9Y4G8 1499 aa22.25■■□□□ 1.15
LDB3-204ENST00000372066 PCGF6Q9BYE7 350 aa22.24■■□□□ 1.15
LDB3-204ENST00000372066 ASXL2Q76L83 1435 aa22.24■■□□□ 1.15
LDB3-204ENST00000372066 UACAQ9BZF9 1416 aa22.24■■□□□ 1.15
LDB3-204ENST00000372066 TRIM26Q12899 539 aaPredicted RBP22.22■■□□□ 1.15
LDB3-204ENST00000372066 DISP1Q96F81 1524 aa22.22■■□□□ 1.15
LDB3-204ENST00000372066 PLB1Q6P1J6 1458 aa22.21■■□□□ 1.15
LDB3-204ENST00000372066 KDM6BO15054 1643 aa22.21■■□□□ 1.15
LDB3-204ENST00000372066 UHRF1BP1LA0JNW5 1464 aa22.2■■□□□ 1.14
LDB3-204ENST00000372066 KIF21BO75037 1637 aa22.2■■□□□ 1.14
LDB3-204ENST00000372066 TSPOAP1O95153 1857 aa22.18■■□□□ 1.14
LDB3-204ENST00000372066 GOLGA3Q08378 1498 aa22.17■■□□□ 1.14
LDB3-204ENST00000372066 KDM4FA0A1W2PPD8 638 aa22.16■■□□□ 1.14
LDB3-204ENST00000372066 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
LDB3-204ENST00000372066 UGGT2Q9NYU1 1516 aa22.15■■□□□ 1.14
LDB3-204ENST00000372066 HRCP23327 699 aa22.11■■□□□ 1.13
LDB3-204ENST00000372066 KDM5BQ9UGL1 1544 aa22.1■■□□□ 1.13
LDB3-204ENST00000372066 GLI2P10070 1586 aa22.1■■□□□ 1.13
LDB3-204ENST00000372066 EPRSP07814 1512 aaKnown RBP22.07■■□□□ 1.12
LDB3-204ENST00000372066 KIAA0556O60303 1618 aa22.06■■□□□ 1.12
LDB3-204ENST00000372066 CEP162Q5TB80 1403 aa22.06■■□□□ 1.12
LDB3-204ENST00000372066 EHMT2Q96KQ7 1210 aa22.04■■□□□ 1.12
LDB3-204ENST00000372066 KCNH8Q96L42 1107 aa22■■□□□ 1.11
LDB3-204ENST00000372066 COL17A1Q9UMD9 1497 aaPredicted RBP21.99■■□□□ 1.11
LDB3-204ENST00000372066 ZCCHC11Q5TAX3 1644 aaKnown RBP21.99■■□□□ 1.11
LDB3-204ENST00000372066 PPRC1Q5VV67 1664 aaKnown RBP21.99■■□□□ 1.11
LDB3-204ENST00000372066 TEX14Q8IWB6 1497 aa21.98■■□□□ 1.11
LDB3-204ENST00000372066 PRXQ9BXM0 1461 aa21.98■■□□□ 1.11
LDB3-204ENST00000372066 WDR7Q9Y4E6 1490 aa21.97■■□□□ 1.11
LDB3-204ENST00000372066 MAP3K4Q9Y6R4 1608 aa21.94■■□□□ 1.1
LDB3-204ENST00000372066 P3H3Q8IVL6 736 aa21.94■■□□□ 1.1
LDB3-204ENST00000372066 CTTNBP2Q8WZ74 1663 aa21.91■■□□□ 1.1
LDB3-204ENST00000372066 CD109Q6YHK3 1445 aa21.9■■□□□ 1.1
LDB3-204ENST00000372066 ARID3CA6NKF2 412 aa21.9■■□□□ 1.1
LDB3-204ENST00000372066 ABCA8O94911 1581 aa21.89■■□□□ 1.1
LDB3-204ENST00000372066 UBTFP17480 764 aaKnown RBP21.89■■□□□ 1.09
LDB3-204ENST00000372066 ADGRL1O94910 1474 aa21.88■■□□□ 1.09
LDB3-204ENST00000372066 MAGI3Q5TCQ9 1506 aa21.83■■□□□ 1.08
LDB3-204ENST00000372066 RANGAP1P46060 587 aaPredicted RBP21.78■■□□□ 1.08
LDB3-204ENST00000372066 ATP10BO94823 1461 aa21.78■■□□□ 1.08
LDB3-204ENST00000372066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.78■■□□□ 1.08
LDB3-204ENST00000372066 HNRNPUL2Q1KMD3 747 aaKnown RBP21.78■■□□□ 1.08
LDB3-204ENST00000372066 CLIP1P30622 1438 aa21.77■■□□□ 1.08
LDB3-204ENST00000372066 CFAP43Q8NDM7 1665 aa21.75■■□□□ 1.07
LDB3-204ENST00000372066 VPS8Q8N3P4 1428 aa21.69■■□□□ 1.06
LDB3-204ENST00000372066 ZEB1P37275 1124 aaPredicted RBP21.69■■□□□ 1.06
LDB3-204ENST00000372066 ARAP3Q8WWN8 1544 aa21.66■■□□□ 1.06
LDB3-204ENST00000372066 PHLDB1Q86UU1 1377 aa21.66■■□□□ 1.06
LDB3-204ENST00000372066 SAMD9Q5K651 1589 aa21.65■■□□□ 1.06
LDB3-204ENST00000372066 RAPGEF3O95398 923 aa21.65■■□□□ 1.06
LDB3-204ENST00000372066 PLEKHD1A6NEE1 506 aa21.62■■□□□ 1.05
LDB3-204ENST00000372066 FHOD3Q2V2M9 1422 aa21.62■■□□□ 1.05
LDB3-204ENST00000372066 RAPGEF6Q8TEU7 1601 aa21.61■■□□□ 1.05
LDB3-204ENST00000372066 ILDR1Q86SU0 546 aaPredicted RBP21.61■■□□□ 1.05
LDB3-204ENST00000372066 ABCA9Q8IUA7 1624 aa21.59■■□□□ 1.05
LDB3-204ENST00000372066 NUP153P49790 1475 aaKnown RBP21.59■■□□□ 1.05
LDB3-204ENST00000372066 HECW2Q9P2P5 1572 aa21.57■■□□□ 1.04
LDB3-204ENST00000372066 NEO1Q92859 1461 aa21.56■■□□□ 1.04
LDB3-204ENST00000372066 ARID4BQ4LE39 1312 aaPredicted RBP21.53■■□□□ 1.04
LDB3-204ENST00000372066 PPARGC1BQ86YN6 1023 aaKnown RBP21.52■■□□□ 1.04
LDB3-204ENST00000372066 ATP1B4Q9UN42 357 aaPredicted RBP21.48■■□□□ 1.03
LDB3-204ENST00000372066 AKNAQ7Z591 1439 aa21.45■■□□□ 1.03
LDB3-204ENST00000372066 EFCAB5A4FU69 1503 aa21.45■■□□□ 1.02
LDB3-204ENST00000372066 DENND4BO75064 1496 aaPredicted RBP21.45■■□□□ 1.02
LDB3-204ENST00000372066 APLP2Q06481 763 aa21.44■■□□□ 1.02
LDB3-204ENST00000372066 PTPRMP28827 1452 aa21.43■■□□□ 1.02
LDB3-204ENST00000372066 FANCAO15360 1455 aa21.42■■□□□ 1.02
LDB3-204ENST00000372066 ARHGAP35Q9NRY4 1499 aa21.4■■□□□ 1.02
LDB3-204ENST00000372066 FRMPD1Q5SYB0 1578 aa21.4■■□□□ 1.02
LDB3-204ENST00000372066 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.39■■□□□ 1.02
LDB3-204ENST00000372066 ADAMTSL3P82987 1691 aa21.38■■□□□ 1.01
LDB3-204ENST00000372066 CDK13Q14004 1512 aaKnown RBP21.37■■□□□ 1.01
LDB3-204ENST00000372066 CDK11AQ9UQ88 783 aaPredicted RBP21.36■■□□□ 1.01
LDB3-204ENST00000372066 FMN1Q68DA7 1419 aa21.34■■□□□ 1.01
LDB3-204ENST00000372066 PLPPR3Q6T4P5 718 aa21.33■■□□□ 1.01
LDB3-204ENST00000372066 TTC37Q6PGP7 1564 aa21.32■■□□□ 1
LDB3-204ENST00000372066 PLCH2O75038 1416 aa21.32■■□□□ 1
LDB3-204ENST00000372066 SCAPERQ9BY12 1400 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms