RNA–Protein interactions for RNA: ENST00000368530.6

TPM3-210, Transcript of tropomyosin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TPM3, Length 1,523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-210ENST00000368530 ERICH3Q5RHP9 1530 aa17.38■□□□□ 0.37
TPM3-210ENST00000368530 SHROOM2Q13796 1616 aa17.38■□□□□ 0.37
TPM3-210ENST00000368530 JPH4Q96JJ6 628 aa17.31■□□□□ 0.36
TPM3-210ENST00000368530 PRG4Q92954 1404 aaPredicted RBP17.3■□□□□ 0.36
TPM3-210ENST00000368530 IGF1RP08069 1367 aa17.21■□□□□ 0.35
TPM3-210ENST00000368530 RUSC2Q8N2Y8 1516 aa17.21■□□□□ 0.35
TPM3-210ENST00000368530 KIF13AQ9H1H9 1805 aa17.17■□□□□ 0.34
TPM3-210ENST00000368530 KIAA0586Q9BVV6 1533 aa17.15■□□□□ 0.34
TPM3-210ENST00000368530 ABCC10Q5T3U5 1492 aa17.14■□□□□ 0.33
TPM3-210ENST00000368530 KIF27Q86VH2 1401 aa17.12■□□□□ 0.33
TPM3-210ENST00000368530 FAM69CQ0P6D2 419 aa17.11■□□□□ 0.33
TPM3-210ENST00000368530 MAPKBP1O60336 1514 aa17.11■□□□□ 0.33
TPM3-210ENST00000368530 ADCY10Q96PN6 1610 aa17.1■□□□□ 0.33
TPM3-210ENST00000368530 NPM1P06748 294 aaKnown RBP eCLIP17.09■□□□□ 0.33
TPM3-210ENST00000368530 CUL7Q14999 1698 aa17.06■□□□□ 0.32
TPM3-210ENST00000368530 DIP2BQ9P265 1576 aa17.06■□□□□ 0.32
TPM3-210ENST00000368530 CARMIL1Q5VZK9 1371 aa17.05■□□□□ 0.32
TPM3-210ENST00000368530 PTPRGP23470 1445 aa17.01■□□□□ 0.31
TPM3-210ENST00000368530 TNIKQ9UKE5 1360 aa16.96■□□□□ 0.31
TPM3-210ENST00000368530 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
TPM3-210ENST00000368530 ADRA2BP18089 450 aa16.93■□□□□ 0.3
TPM3-210ENST00000368530 ABCC2Q92887 1545 aa16.93■□□□□ 0.3
TPM3-210ENST00000368530 CARMIL2Q6F5E8 1435 aa16.93■□□□□ 0.3
TPM3-210ENST00000368530 KDM4FA0A1W2PPD8 638 aa16.92■□□□□ 0.3
TPM3-210ENST00000368530 TTBK1Q5TCY1 1321 aaPredicted RBP16.92■□□□□ 0.3
TPM3-210ENST00000368530 DISP1Q96F81 1524 aa16.92■□□□□ 0.3
TPM3-210ENST00000368530 IQGAP2Q13576 1575 aa16.91■□□□□ 0.3
TPM3-210ENST00000368530 UHRF1BP1LA0JNW5 1464 aa16.9■□□□□ 0.3
TPM3-210ENST00000368530 KDM6BO15054 1643 aa16.9■□□□□ 0.3
TPM3-210ENST00000368530 ASXL2Q76L83 1435 aa16.89■□□□□ 0.29
TPM3-210ENST00000368530 UACAQ9BZF9 1416 aa16.88■□□□□ 0.29
TPM3-210ENST00000368530 PLB1Q6P1J6 1458 aa16.87■□□□□ 0.29
TPM3-210ENST00000368530 TSPOAP1O95153 1857 aa16.86■□□□□ 0.29
TPM3-210ENST00000368530 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
TPM3-210ENST00000368530 GLI2P10070 1586 aa16.85■□□□□ 0.29
TPM3-210ENST00000368530 UGGT2Q9NYU1 1516 aa16.85■□□□□ 0.29
TPM3-210ENST00000368530 KDM5BQ9UGL1 1544 aa16.83■□□□□ 0.29
TPM3-210ENST00000368530 PPRC1Q5VV67 1664 aaKnown RBP16.83■□□□□ 0.28
TPM3-210ENST00000368530 COL17A1Q9UMD9 1497 aaPredicted RBP16.8■□□□□ 0.28
TPM3-210ENST00000368530 EPRSP07814 1512 aaKnown RBP16.79■□□□□ 0.28
TPM3-210ENST00000368530 KIAA0556O60303 1618 aa16.77■□□□□ 0.27
TPM3-210ENST00000368530 MAP3K4Q9Y6R4 1608 aa16.74■□□□□ 0.27
TPM3-210ENST00000368530 ZCCHC11Q5TAX3 1644 aaKnown RBP16.73■□□□□ 0.27
TPM3-210ENST00000368530 PRXQ9BXM0 1461 aa16.69■□□□□ 0.26
TPM3-210ENST00000368530 WDR7Q9Y4E6 1490 aa16.69■□□□□ 0.26
TPM3-210ENST00000368530 TEX14Q8IWB6 1497 aa16.67■□□□□ 0.26
TPM3-210ENST00000368530 ADGRL1O94910 1474 aa16.67■□□□□ 0.26
TPM3-210ENST00000368530 ABCA8O94911 1581 aa16.66■□□□□ 0.26
TPM3-210ENST00000368530 GOLGA3Q08378 1498 aa16.64■□□□□ 0.25
TPM3-210ENST00000368530 CTTNBP2Q8WZ74 1663 aa16.64■□□□□ 0.25
TPM3-210ENST00000368530 MAGI3Q5TCQ9 1506 aa16.62■□□□□ 0.25
TPM3-210ENST00000368530 KCNH8Q96L42 1107 aa16.61■□□□□ 0.25
TPM3-210ENST00000368530 CD109Q6YHK3 1445 aa16.61■□□□□ 0.25
TPM3-210ENST00000368530 CFAP43Q8NDM7 1665 aa16.56■□□□□ 0.24
TPM3-210ENST00000368530 ATP10BO94823 1461 aa16.56■□□□□ 0.24
TPM3-210ENST00000368530 P3H3Q8IVL6 736 aa16.54■□□□□ 0.24
TPM3-210ENST00000368530 PIAS4Q8N2W9 510 aaPredicted RBP16.51■□□□□ 0.23
TPM3-210ENST00000368530 CSRNP3Q8WYN3 585 aa16.51■□□□□ 0.23
TPM3-210ENST00000368530 ARID3CA6NKF2 412 aa16.5■□□□□ 0.23
TPM3-210ENST00000368530 ILDR1Q86SU0 546 aaPredicted RBP16.5■□□□□ 0.23
TPM3-210ENST00000368530 ARAP3Q8WWN8 1544 aa16.5■□□□□ 0.23
TPM3-210ENST00000368530 SAMD9Q5K651 1589 aa16.47■□□□□ 0.23
TPM3-210ENST00000368530 HECW2Q9P2P5 1572 aa16.47■□□□□ 0.23
TPM3-210ENST00000368530 ABCA9Q8IUA7 1624 aa16.44■□□□□ 0.22
TPM3-210ENST00000368530 PHLDB1Q86UU1 1377 aa16.44■□□□□ 0.22
TPM3-210ENST00000368530 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
TPM3-210ENST00000368530 RAPGEF3O95398 923 aa16.41■□□□□ 0.22
TPM3-210ENST00000368530 KIF21BO75037 1637 aa16.41■□□□□ 0.22
TPM3-210ENST00000368530 NUP153P49790 1475 aaKnown RBP16.41■□□□□ 0.22
TPM3-210ENST00000368530 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
TPM3-210ENST00000368530 NEO1Q92859 1461 aa16.38■□□□□ 0.21
TPM3-210ENST00000368530 EEA1Q15075 1411 aa16.36■□□□□ 0.21
TPM3-210ENST00000368530 FHOD3Q2V2M9 1422 aa16.36■□□□□ 0.21
TPM3-210ENST00000368530 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.35■□□□□ 0.21
TPM3-210ENST00000368530 HNRNPUL2Q1KMD3 747 aaKnown RBP16.35■□□□□ 0.21
TPM3-210ENST00000368530 FRMPD1Q5SYB0 1578 aa16.35■□□□□ 0.21
TPM3-210ENST00000368530 RANGAP1P46060 587 aaPredicted RBP16.34■□□□□ 0.21
TPM3-210ENST00000368530 ADAMTSL3P82987 1691 aa16.33■□□□□ 0.2
TPM3-210ENST00000368530 PTPRMP28827 1452 aa16.33■□□□□ 0.2
TPM3-210ENST00000368530 PLEKHD1A6NEE1 506 aa16.31■□□□□ 0.2
TPM3-210ENST00000368530 AKNAQ7Z591 1439 aa16.27■□□□□ 0.2
TPM3-210ENST00000368530 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.27■□□□□ 0.193e-7■□□□□ 8.5
TPM3-210ENST00000368530 DENND4BO75064 1496 aaPredicted RBP16.26■□□□□ 0.19
TPM3-210ENST00000368530 BCORL1Q5H9F3 1711 aa16.26■□□□□ 0.19
TPM3-210ENST00000368530 EFCAB5A4FU69 1503 aa16.24■□□□□ 0.19
TPM3-210ENST00000368530 FANCAO15360 1455 aa16.24■□□□□ 0.19
TPM3-210ENST00000368530 RICTORQ6R327 1708 aa16.23■□□□□ 0.19
TPM3-210ENST00000368530 ARID4BQ4LE39 1312 aaPredicted RBP16.23■□□□□ 0.19
TPM3-210ENST00000368530 MADDQ8WXG6 1647 aa16.22■□□□□ 0.19
TPM3-210ENST00000368530 ARHGEF40Q8TER5 1519 aa16.22■□□□□ 0.19
TPM3-210ENST00000368530 TTC37Q6PGP7 1564 aa16.22■□□□□ 0.19
TPM3-210ENST00000368530 CDK13Q14004 1512 aaKnown RBP16.21■□□□□ 0.19
TPM3-210ENST00000368530 LMTK3Q96Q04 1460 aa16.2■□□□□ 0.18
TPM3-210ENST00000368530 YEATS2Q9ULM3 1422 aa16.2■□□□□ 0.18
TPM3-210ENST00000368530 ZMYM4Q5VZL5 1548 aa16.19■□□□□ 0.18
TPM3-210ENST00000368530 PLCH2O75038 1416 aa16.19■□□□□ 0.18
TPM3-210ENST00000368530 SIGLEC1Q9BZZ2 1709 aa16.17■□□□□ 0.18
TPM3-210ENST00000368530 PCF11O94913 1555 aaKnown RBP16.17■□□□□ 0.18
TPM3-210ENST00000368530 CFAP74Q9C0B2 1584 aa16.16■□□□□ 0.18
TPM3-210ENST00000368530 FBXO41Q8TF61 875 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms