RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 KIF13AQ9H1H9 1805 aa15.94■□□□□ 0.14
HMGB1P39-201ENST00000366304 ABCA10Q8WWZ4 1543 aa15.94■□□□□ 0.14
HMGB1P39-201ENST00000366304 NUP160Q12769 1436 aa15.94■□□□□ 0.14
HMGB1P39-201ENST00000366304 KDM4FA0A1W2PPD8 638 aa15.91■□□□□ 0.14
HMGB1P39-201ENST00000366304 ILDR1Q86SU0 546 aaPredicted RBP15.91■□□□□ 0.14
HMGB1P39-201ENST00000366304 SHROOM2Q13796 1616 aa15.9■□□□□ 0.14
HMGB1P39-201ENST00000366304 ADAMTS12P58397 1594 aa15.87■□□□□ 0.13
HMGB1P39-201ENST00000366304 DMRT2Q9Y5R5 561 aa15.84■□□□□ 0.13
HMGB1P39-201ENST00000366304 FAM69CQ0P6D2 419 aa15.82■□□□□ 0.12
HMGB1P39-201ENST00000366304 ABCC10Q5T3U5 1492 aa15.81■□□□□ 0.12
HMGB1P39-201ENST00000366304 PRG4Q92954 1404 aaPredicted RBP15.81■□□□□ 0.12
HMGB1P39-201ENST00000366304 FHAD1B1AJZ9 1412 aa15.78■□□□□ 0.12
HMGB1P39-201ENST00000366304 DIP2BQ9P265 1576 aa15.76■□□□□ 0.11
HMGB1P39-201ENST00000366304 JPH4Q96JJ6 628 aa15.74■□□□□ 0.11
HMGB1P39-201ENST00000366304 WRNQ14191 1432 aaPredicted RBP eCLIP15.74■□□□□ 0.11
HMGB1P39-201ENST00000366304 MAPKBP1O60336 1514 aa15.73■□□□□ 0.11
HMGB1P39-201ENST00000366304 KDM6BO15054 1643 aa15.71■□□□□ 0.11
HMGB1P39-201ENST00000366304 ADCY10Q96PN6 1610 aa15.71■□□□□ 0.11
HMGB1P39-201ENST00000366304 ERICH3Q5RHP9 1530 aa15.68■□□□□ 0.1
HMGB1P39-201ENST00000366304 RUSC2Q8N2Y8 1516 aa15.67■□□□□ 0.1
HMGB1P39-201ENST00000366304 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
HMGB1P39-201ENST00000366304 NPM1P06748 294 aaKnown RBP eCLIP15.64■□□□□ 0.09
HMGB1P39-201ENST00000366304 BIVM-ERCC5R4GMW8 1640 aa15.64■□□□□ 0.09
HMGB1P39-201ENST00000366304 CNKSR2Q8WXI2 1034 aa15.63■□□□□ 0.09
HMGB1P39-201ENST00000366304 TSPOAP1O95153 1857 aa15.62■□□□□ 0.09
HMGB1P39-201ENST00000366304 ADGRL1O94910 1474 aa15.59■□□□□ 0.09
HMGB1P39-201ENST00000366304 COL17A1Q9UMD9 1497 aaPredicted RBP15.56■□□□□ 0.08
HMGB1P39-201ENST00000366304 PPRC1Q5VV67 1664 aaKnown RBP15.54■□□□□ 0.08
HMGB1P39-201ENST00000366304 HECW2Q9P2P5 1572 aa15.54■□□□□ 0.08
HMGB1P39-201ENST00000366304 NCBP3Q53F19 620 aaKnown RBP15.51■□□□□ 0.07
HMGB1P39-201ENST00000366304 KIAA0586Q9BVV6 1533 aa15.51■□□□□ 0.07
HMGB1P39-201ENST00000366304 ASXL2Q76L83 1435 aa15.48■□□□□ 0.07
HMGB1P39-201ENST00000366304 TTBK1Q5TCY1 1321 aaPredicted RBP15.47■□□□□ 0.07
HMGB1P39-201ENST00000366304 PTPRGP23470 1445 aa15.47■□□□□ 0.07
HMGB1P39-201ENST00000366304 GLI2P10070 1586 aa15.46■□□□□ 0.07
HMGB1P39-201ENST00000366304 ABCC2Q92887 1545 aa15.46■□□□□ 0.07
HMGB1P39-201ENST00000366304 IGF1RP08069 1367 aa15.46■□□□□ 0.07
HMGB1P39-201ENST00000366304 SUPT5HO00267 1087 aaKnown RBP15.44■□□□□ 0.06
HMGB1P39-201ENST00000366304 PLB1Q6P1J6 1458 aa15.41■□□□□ 0.06
HMGB1P39-201ENST00000366304 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
HMGB1P39-201ENST00000366304 EPRSP07814 1512 aaKnown RBP15.38■□□□□ 0.05
HMGB1P39-201ENST00000366304 TNIKQ9UKE5 1360 aa15.38■□□□□ 0.05
HMGB1P39-201ENST00000366304 KCNA4P22459 653 aa15.38■□□□□ 0.05
HMGB1P39-201ENST00000366304 RNF216Q9NWF9 866 aaPredicted RBP15.38■□□□□ 0.05
HMGB1P39-201ENST00000366304 MAP3K4Q9Y6R4 1608 aa15.37■□□□□ 0.05
HMGB1P39-201ENST00000366304 UHRF1BP1LA0JNW5 1464 aa15.37■□□□□ 0.05
HMGB1P39-201ENST00000366304 CUL7Q14999 1698 aa15.37■□□□□ 0.05
HMGB1P39-201ENST00000366304 UACAQ9BZF9 1416 aa15.34■□□□□ 0.05
HMGB1P39-201ENST00000366304 FBXO41Q8TF61 875 aa15.33■□□□□ 0.04
HMGB1P39-201ENST00000366304 KDM5BQ9UGL1 1544 aa15.33■□□□□ 0.04
HMGB1P39-201ENST00000366304 DISP1Q96F81 1524 aa15.32■□□□□ 0.04
HMGB1P39-201ENST00000366304 NPM3O75607 178 aaKnown RBP15.31■□□□□ 0.04
HMGB1P39-201ENST00000366304 CARMIL2Q6F5E8 1435 aa15.3■□□□□ 0.04
HMGB1P39-201ENST00000366304 KIF27Q86VH2 1401 aa15.3■□□□□ 0.04
HMGB1P39-201ENST00000366304 TEX14Q8IWB6 1497 aa15.28■□□□□ 0.04
HMGB1P39-201ENST00000366304 CARMIL1Q5VZK9 1371 aa15.28■□□□□ 0.04
HMGB1P39-201ENST00000366304 ZCCHC11Q5TAX3 1644 aaKnown RBP15.27■□□□□ 0.03
HMGB1P39-201ENST00000366304 IQGAP2Q13576 1575 aa15.26■□□□□ 0.03
HMGB1P39-201ENST00000366304 DCAF8L1A6NGE4 600 aa15.25■□□□□ 0.03
HMGB1P39-201ENST00000366304 WDR7Q9Y4E6 1490 aa15.21■□□□□ 0.03
HMGB1P39-201ENST00000366304 KIF21BO75037 1637 aa15.2■□□□□ 0.02
HMGB1P39-201ENST00000366304 MAGI3Q5TCQ9 1506 aa15.18■□□□□ 0.02
HMGB1P39-201ENST00000366304 UGGT2Q9NYU1 1516 aa15.18■□□□□ 0.02
HMGB1P39-201ENST00000366304 CD109Q6YHK3 1445 aa15.17■□□□□ 0.02
HMGB1P39-201ENST00000366304 KIAA0556O60303 1618 aa15.16■□□□□ 0.02
HMGB1P39-201ENST00000366304 PTPRMP28827 1452 aa15.14■□□□□ 0.01
HMGB1P39-201ENST00000366304 KCNH8Q96L42 1107 aa15.14■□□□□ 0.01
HMGB1P39-201ENST00000366304 ADAMTSL3P82987 1691 aa15.11■□□□□ 0.01
HMGB1P39-201ENST00000366304 CFAP43Q8NDM7 1665 aa15.11■□□□□ 0.01
HMGB1P39-201ENST00000366304 ARAP3Q8WWN8 1544 aa15.09■□□□□ 0.01
HMGB1P39-201ENST00000366304 LMTK3Q96Q04 1460 aa15.08■□□□□ 0.01
HMGB1P39-201ENST00000366304 ABCA8O94911 1581 aa15.08■□□□□ 0
HMGB1P39-201ENST00000366304 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
HMGB1P39-201ENST00000366304 PCF11O94913 1555 aaKnown RBP15.06■□□□□ 0
HMGB1P39-201ENST00000366304 RAPGEF3O95398 923 aa15.05■□□□□ -0
HMGB1P39-201ENST00000366304 ILDR2Q71H61 639 aa15.05■□□□□ -0
HMGB1P39-201ENST00000366304 ARID3CA6NKF2 412 aa15.02■□□□□ -0
HMGB1P39-201ENST00000366304 MADDQ8WXG6 1647 aa15.02□□□□□ -0.01
HMGB1P39-201ENST00000366304 HSPA2P54652 639 aa15.01□□□□□ -0.01
HMGB1P39-201ENST00000366304 FRMPD1Q5SYB0 1578 aa15□□□□□ -0.01
HMGB1P39-201ENST00000366304 BCORL1Q5H9F3 1711 aa15□□□□□ -0.01
HMGB1P39-201ENST00000366304 ATP10BO94823 1461 aa14.98□□□□□ -0.01
HMGB1P39-201ENST00000366304 CERKQ8TCT0 537 aa14.96□□□□□ -0.01
HMGB1P39-201ENST00000366304 ABCA9Q8IUA7 1624 aa14.95□□□□□ -0.02
HMGB1P39-201ENST00000366304 GOLGA3Q08378 1498 aa14.94□□□□□ -0.02
HMGB1P39-201ENST00000366304 ARID4BQ4LE39 1312 aaPredicted RBP14.93□□□□□ -0.02
HMGB1P39-201ENST00000366304 RIMS1Q86UR5 1692 aaKnown RBP14.93□□□□□ -0.02
HMGB1P39-201ENST00000366304 SOCS7O14512 581 aa14.92□□□□□ -0.02
HMGB1P39-201ENST00000366304 CTTNBP2Q8WZ74 1663 aa14.91□□□□□ -0.02
HMGB1P39-201ENST00000366304 PHLDB1Q86UU1 1377 aa14.91□□□□□ -0.02
HMGB1P39-201ENST00000366304 SIGLEC1Q9BZZ2 1709 aa14.91□□□□□ -0.02
HMGB1P39-201ENST00000366304 NEO1Q92859 1461 aa14.9□□□□□ -0.02
HMGB1P39-201ENST00000366304 DISP3Q9P2K9 1392 aa14.9□□□□□ -0.02
HMGB1P39-201ENST00000366304 P3H3Q8IVL6 736 aa14.89□□□□□ -0.03
HMGB1P39-201ENST00000366304 ARHGEF40Q8TER5 1519 aa14.88□□□□□ -0.03
HMGB1P39-201ENST00000366304 YEATS2Q9ULM3 1422 aa14.83□□□□□ -0.03
HMGB1P39-201ENST00000366304 PRXQ9BXM0 1461 aa14.83□□□□□ -0.03
HMGB1P39-201ENST00000366304 RICTORQ6R327 1708 aa14.82□□□□□ -0.04
HMGB1P39-201ENST00000366304 FHOD3Q2V2M9 1422 aa14.82□□□□□ -0.04
HMGB1P39-201ENST00000366304 DENND4BO75064 1496 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms