RNA–Protein interactions for RNA: ENST00000356396.8

LSS-201, Transcript of lanosterol synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSS, Length 2,995 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-201ENST00000356396 ERICH3Q5RHP9 1530 aa21.07■□□□□ 0.96
LSS-201ENST00000356396 FAM50AQ14320 339 aaKnown RBP21.06■□□□□ 0.96
LSS-201ENST00000356396 MRC2Q9UBG0 1479 aa21.03■□□□□ 0.96
LSS-201ENST00000356396 CHMP7Q8WUX9 453 aaPredicted RBP21■□□□□ 0.95
LSS-201ENST00000356396 TARBP1Q13395 1621 aaKnown RBP20.94■□□□□ 0.94
LSS-201ENST00000356396 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
LSS-201ENST00000356396 ABCA5Q8WWZ7 1642 aa20.87■□□□□ 0.93
LSS-201ENST00000356396 PHLDB1Q86UU1 1377 aa20.85■□□□□ 0.93
LSS-201ENST00000356396 WDR97A6NE52 1622 aa20.83■□□□□ 0.93
LSS-201ENST00000356396 CHIC2Q9UKJ5 165 aa20.83■□□□□ 0.93
LSS-201ENST00000356396 PCF11O94913 1555 aaKnown RBP20.82■□□□□ 0.92
LSS-201ENST00000356396 GRIN2BQ13224 1484 aa20.78■□□□□ 0.92
LSS-201ENST00000356396 WDR62O43379 1518 aa20.75■□□□□ 0.91
LSS-201ENST00000356396 EIF4G3O43432 1585 aaKnown RBP20.75■□□□□ 0.91
LSS-201ENST00000356396 FHAD1B1AJZ9 1412 aa20.75■□□□□ 0.91
LSS-201ENST00000356396 IFT140Q96RY7 1462 aa20.74■□□□□ 0.91
LSS-201ENST00000356396 MTUS2Q5JR59 1369 aa20.74■□□□□ 0.91
LSS-201ENST00000356396 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
LSS-201ENST00000356396 CCNB3Q8WWL7 1395 aa20.72■□□□□ 0.91
LSS-201ENST00000356396 THOC2Q8NI27 1593 aaKnown RBP20.72■□□□□ 0.91
LSS-201ENST00000356396 CUL7Q14999 1698 aa20.71■□□□□ 0.91
LSS-201ENST00000356396 ZEB1P37275 1124 aaPredicted RBP20.7■□□□□ 0.9
LSS-201ENST00000356396 NEUROD1Q13562 356 aa20.7■□□□□ 0.9
LSS-201ENST00000356396 JPH4Q96JJ6 628 aa20.7■□□□□ 0.9
LSS-201ENST00000356396 LRRC9Q6ZRR7 1453 aa20.69■□□□□ 0.9
LSS-201ENST00000356396 ZNF777Q9ULD5 760 aaPredicted RBP20.68■□□□□ 0.9
LSS-201ENST00000356396 CDK13Q14004 1512 aaKnown RBP20.68■□□□□ 0.9
LSS-201ENST00000356396 RRP7BPQ9NSQ0 103 aa20.67■□□□□ 0.9
LSS-201ENST00000356396 TIAM1Q13009 1591 aa20.66■□□□□ 0.9
LSS-201ENST00000356396 CTTNBP2Q8WZ74 1663 aa20.66■□□□□ 0.9
LSS-201ENST00000356396 ZNF644Q9H582 1327 aaPredicted RBP20.66■□□□□ 0.9
LSS-201ENST00000356396 ADAMTS12P58397 1594 aa20.65■□□□□ 0.9
LSS-201ENST00000356396 SIN3AQ96ST3 1273 aa20.64■□□□□ 0.89
LSS-201ENST00000356396 GRIN2AQ12879 1464 aa20.62■□□□□ 0.89
LSS-201ENST00000356396 IQGAP2Q13576 1575 aa20.58■□□□□ 0.89
LSS-201ENST00000356396 HIRIP3Q9BW71 556 aaPredicted RBP20.58■□□□□ 0.89
LSS-201ENST00000356396 PLB1Q6P1J6 1458 aa20.58■□□□□ 0.88
LSS-201ENST00000356396 CASKIN1Q8WXD9 1431 aa20.57■□□□□ 0.88
LSS-201ENST00000356396 FMN1Q68DA7 1419 aa20.57■□□□□ 0.88
LSS-201ENST00000356396 RAB3GAP2Q9H2M9 1393 aa20.55■□□□□ 0.88
LSS-201ENST00000356396 MAGI3Q5TCQ9 1506 aa20.55■□□□□ 0.88
LSS-201ENST00000356396 LRRIQ1Q96JM4 1722 aa20.54■□□□□ 0.88
LSS-201ENST00000356396 FOXD1Q16676 465 aa20.54■□□□□ 0.88
LSS-201ENST00000356396 CEP170Q5SW79 1584 aa20.53■□□□□ 0.88
LSS-201ENST00000356396 KCNH8Q96L42 1107 aa20.52■□□□□ 0.87
LSS-201ENST00000356396 DHX57Q6P158 1386 aaKnown RBP20.51■□□□□ 0.87
LSS-201ENST00000356396 RRBP1Q9P2E9 1410 aaKnown RBP20.51■□□□□ 0.87
LSS-201ENST00000356396 DISP1Q96F81 1524 aa20.5■□□□□ 0.87
LSS-201ENST00000356396 PTPRKQ15262 1439 aa20.49■□□□□ 0.87
LSS-201ENST00000356396 FYCO1Q9BQS8 1478 aa20.48■□□□□ 0.87
LSS-201ENST00000356396 PRG4Q92954 1404 aaPredicted RBP20.48■□□□□ 0.87
LSS-201ENST00000356396 SYNJ2O15056 1496 aa20.47■□□□□ 0.87
LSS-201ENST00000356396 NCOA2Q15596 1464 aa20.46■□□□□ 0.87
LSS-201ENST00000356396 EFCAB5A4FU69 1503 aa20.46■□□□□ 0.87
LSS-201ENST00000356396 SAMD9Q5K651 1589 aa20.46■□□□□ 0.87
LSS-201ENST00000356396 KIAA0586Q9BVV6 1533 aa20.46■□□□□ 0.87
LSS-201ENST00000356396 TRIM52Q96A61 297 aa20.45■□□□□ 0.86
LSS-201ENST00000356396 EPRSP07814 1512 aaKnown RBP20.42■□□□□ 0.86
LSS-201ENST00000356396 DIEXFQ68CQ4 756 aaKnown RBP20.4■□□□□ 0.86
LSS-201ENST00000356396 ERCC6L2Q5T890 1561 aa20.4■□□□□ 0.86
LSS-201ENST00000356396 FGD6Q6ZV73 1430 aa20.4■□□□□ 0.86
LSS-201ENST00000356396 YTHDC1Q96MU7 727 aaKnown RBP20.39■□□□□ 0.85
LSS-201ENST00000356396 MAGI1Q96QZ7 1491 aaPredicted RBP20.38■□□□□ 0.85
LSS-201ENST00000356396 NUP153P49790 1475 aaKnown RBP20.37■□□□□ 0.85
LSS-201ENST00000356396 KIAA0556O60303 1618 aa20.35■□□□□ 0.85
LSS-201ENST00000356396 CFAP43Q8NDM7 1665 aa20.34■□□□□ 0.85
LSS-201ENST00000356396 SETD5Q9C0A6 1442 aa20.33■□□□□ 0.84
LSS-201ENST00000356396 CFDP1Q9UEE9 299 aaPredicted RBP20.32■□□□□ 0.84
LSS-201ENST00000356396 HNRNPMP52272 730 aaKnown RBP eCLIP20.3■□□□□ 0.843e-7■■■■□ 23.6
LSS-201ENST00000356396 MYOM3Q5VTT5 1437 aa20.3■□□□□ 0.84
LSS-201ENST00000356396 ZNF316A6NFI3 1004 aaPredicted RBP20.29■□□□□ 0.84
LSS-201ENST00000356396 UGGT2Q9NYU1 1516 aa20.29■□□□□ 0.84
LSS-201ENST00000356396 PLEKHD1A6NEE1 506 aa20.29■□□□□ 0.84
LSS-201ENST00000356396 PTPRGP23470 1445 aa20.29■□□□□ 0.84
LSS-201ENST00000356396 CHD1O14646 1710 aa20.28■□□□□ 0.84
LSS-201ENST00000356396 NUP160Q12769 1436 aa20.27■□□□□ 0.84
LSS-201ENST00000356396 CARMIL2Q6F5E8 1435 aa20.26■□□□□ 0.83
LSS-201ENST00000356396 CDK11AQ9UQ88 783 aaPredicted RBP20.24■□□□□ 0.83
LSS-201ENST00000356396 HECW1Q76N89 1606 aa20.21■□□□□ 0.83
LSS-201ENST00000356396 MAP3K1Q13233 1512 aa20.21■□□□□ 0.83
LSS-201ENST00000356396 MIER1Q8N108 512 aa20.21■□□□□ 0.83
LSS-201ENST00000356396 KIF14Q15058 1648 aa20.19■□□□□ 0.82
LSS-201ENST00000356396 CNGB1Q14028 1251 aaPredicted RBP20.19■□□□□ 0.82
LSS-201ENST00000356396 RAPGEF6Q8TEU7 1601 aa20.19■□□□□ 0.82
LSS-201ENST00000356396 ARHGEF11O15085 1522 aa20.18■□□□□ 0.82
LSS-201ENST00000356396 ATP10BO94823 1461 aa20.18■□□□□ 0.82
LSS-201ENST00000356396 MAPKBP1O60336 1514 aa20.17■□□□□ 0.82
LSS-201ENST00000356396 KDM6BO15054 1643 aa20.17■□□□□ 0.82
LSS-201ENST00000356396 SUPT6HQ7KZ85 1726 aaKnown RBP20.17■□□□□ 0.82
LSS-201ENST00000356396 EHBP1L1Q8N3D4 1523 aa20.16■□□□□ 0.82
LSS-201ENST00000356396 PTPN23Q9H3S7 1636 aa20.16■□□□□ 0.82
LSS-201ENST00000356396 CCDC18Q5T9S5 1454 aa20.15■□□□□ 0.82
LSS-201ENST00000356396 ZNF326Q5BKZ1 582 aaKnown RBP20.14■□□□□ 0.82
LSS-201ENST00000356396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.14■□□□□ 0.821e-7■□□□□ 10.3
LSS-201ENST00000356396 NAIPQ13075 1403 aa20.14■□□□□ 0.81
LSS-201ENST00000356396 MYT1LQ9UL68 1186 aa20.11■□□□□ 0.81
LSS-201ENST00000356396 SLC4A1APQ9BWU0 796 aaKnown RBP20.08■□□□□ 0.8
LSS-201ENST00000356396 TROQ12816 1431 aaPredicted RBP20.08■□□□□ 0.8
LSS-201ENST00000356396 MPHOSPH9Q99550 1183 aa20.06■□□□□ 0.8
LSS-201ENST00000356396 SENP3Q9H4L4 574 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms