RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CASC1Q6TDU7 716 aa16.44■□□□□ 0.22
COL6A3-203ENST00000353578 HSP90AA2PQ14568 343 aaPredicted RBP16.42■□□□□ 0.22
COL6A3-203ENST00000353578 A0A0U1RQG5 324 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-203ENST00000353578 CHMP4BQ9H444 224 aaKnown RBP16.4■□□□□ 0.22
COL6A3-203ENST00000353578 MTERF4Q7Z6M4 381 aaKnown RBP16.37■□□□□ 0.21
COL6A3-203ENST00000353578 TMC1Q8TDI8 760 aa16.36■□□□□ 0.21
COL6A3-203ENST00000353578 KIAA2012Q0VF49 1180 aa16.34■□□□□ 0.21
COL6A3-203ENST00000353578 GOLGA6L3A6NEY3 463 aa16.33■□□□□ 0.21
COL6A3-203ENST00000353578 ARXQ96QS3 562 aa16.32■□□□□ 0.2
COL6A3-203ENST00000353578 SUPT16HQ9Y5B9 1047 aaKnown RBP16.32■□□□□ 0.2
COL6A3-203ENST00000353578 SETQ01105 290 aaPredicted RBP16.31■□□□□ 0.2
COL6A3-203ENST00000353578 MRS2Q9HD23 443 aa16.3■□□□□ 0.2
COL6A3-203ENST00000353578 MAP7D2Q96T17 732 aa16.29■□□□□ 0.2
COL6A3-203ENST00000353578 MIER1Q8N108 512 aa16.28■□□□□ 0.2
COL6A3-203ENST00000353578 MS4A1P11836 297 aa16.27■□□□□ 0.2
COL6A3-203ENST00000353578 SYAP1Q96A49 352 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-203ENST00000353578 WDR43Q15061 677 aaKnown RBP eCLIP16.26■□□□□ 0.19
COL6A3-203ENST00000353578 GBP4Q96PP9 640 aa16.26■□□□□ 0.19
COL6A3-203ENST00000353578 RTN4Q9NQC3 1192 aaKnown RBP16.24■□□□□ 0.19
COL6A3-203ENST00000353578 FAM9BQ8IZU0 186 aa16.23■□□□□ 0.19
COL6A3-203ENST00000353578 EEA1Q15075 1411 aa16.23■□□□□ 0.19
COL6A3-203ENST00000353578 GOLGA6L1Q8N7Z2 621 aa16.23■□□□□ 0.19
COL6A3-203ENST00000353578 RBM19Q9Y4C8 960 aaKnown RBP16.23■□□□□ 0.19
COL6A3-203ENST00000353578 DDX10Q13206 875 aaKnown RBP16.21■□□□□ 0.19
COL6A3-203ENST00000353578 HSCBQ8IWL3 235 aa16.21■□□□□ 0.19
COL6A3-203ENST00000353578 CCER2I3L3R5 266 aa16.18■□□□□ 0.18
COL6A3-203ENST00000353578 PHF14O94880 888 aa16.17■□□□□ 0.18
COL6A3-203ENST00000353578 CSRNP3Q8WYN3 585 aa16.16■□□□□ 0.18
COL6A3-203ENST00000353578 TAF3Q5VWG9 929 aa16.15■□□□□ 0.18
COL6A3-203ENST00000353578 TCERG1O14776 1098 aaKnown RBP16.14■□□□□ 0.17
COL6A3-203ENST00000353578 PKNOX2Q96KN3 472 aa16.13■□□□□ 0.17
COL6A3-203ENST00000353578 NOM1Q5C9Z4 860 aaKnown RBP16.13■□□□□ 0.17
COL6A3-203ENST00000353578 IPO9Q96P70 1041 aaKnown RBP16.12■□□□□ 0.17
COL6A3-203ENST00000353578 FANCIQ9NVI1 1328 aa16.12■□□□□ 0.17
COL6A3-203ENST00000353578 HTATSF1O43719 755 aaKnown RBP16.12■□□□□ 0.17
COL6A3-203ENST00000353578 EIF4G2P78344 907 aaKnown RBP eCLIP16.11■□□□□ 0.17
COL6A3-203ENST00000353578 TIMELESSQ9UNS1 1208 aa16.11■□□□□ 0.17
COL6A3-203ENST00000353578 HSP90AB1P08238 724 aaKnown RBP16.11■□□□□ 0.17
COL6A3-203ENST00000353578 CSPP1Q1MSJ5 1256 aa16.1■□□□□ 0.17
COL6A3-203ENST00000353578 VSIG10Q8N0Z9 540 aa16.09■□□□□ 0.17
COL6A3-203ENST00000353578 DDX11L8A8MPP1 907 aa16.08■□□□□ 0.17
COL6A3-203ENST00000353578 GPS2Q13227 327 aa16.07■□□□□ 0.16
COL6A3-203ENST00000353578 CDCA8Q53HL2 280 aa16.07■□□□□ 0.16
COL6A3-203ENST00000353578 GOLGA6L4A6NEF3 574 aa16.06■□□□□ 0.16
COL6A3-203ENST00000353578 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.06■□□□□ 0.16
COL6A3-203ENST00000353578 TEX35Q5T0J7 233 aa16.05■□□□□ 0.16
COL6A3-203ENST00000353578 SKOR2Q2VWA4 1001 aaPredicted RBP16.04■□□□□ 0.16
COL6A3-203ENST00000353578 CCDC66A2RUB6 948 aa16.04■□□□□ 0.16
COL6A3-203ENST00000353578 MCCP23508 829 aa16.04■□□□□ 0.16
COL6A3-203ENST00000353578 FTSJ3Q8IY81 847 aaKnown RBP16.02■□□□□ 0.15
COL6A3-203ENST00000353578 ZBTB4Q9P1Z0 1013 aaPredicted RBP16■□□□□ 0.15
COL6A3-203ENST00000353578 APPP05067 770 aa16■□□□□ 0.15
COL6A3-203ENST00000353578 PODXL2Q9NZ53 605 aa16■□□□□ 0.15
COL6A3-203ENST00000353578 CWC15Q9P013 229 aaKnown RBP15.99■□□□□ 0.15
COL6A3-203ENST00000353578 GSE1Q14687 1217 aa15.99■□□□□ 0.15
COL6A3-203ENST00000353578 DRC7Q8IY82 874 aa15.99■□□□□ 0.15
COL6A3-203ENST00000353578 TPM2P07951 284 aa15.98■□□□□ 0.15
COL6A3-203ENST00000353578 TPM4P67936 248 aa15.97■□□□□ 0.15
COL6A3-203ENST00000353578 CCDC34Q96HJ3 373 aa15.96■□□□□ 0.15
COL6A3-203ENST00000353578 RRP9O43818 475 aaKnown RBP15.94■□□□□ 0.14
COL6A3-203ENST00000353578 GOLGA3Q08378 1498 aa15.94■□□□□ 0.14
COL6A3-203ENST00000353578 PRKCSHP14314 528 aaPredicted RBP15.93■□□□□ 0.14
COL6A3-203ENST00000353578 HAP1P54257 671 aaPredicted RBP15.93■□□□□ 0.14
COL6A3-203ENST00000353578 TSHZ2Q9NRE2 1034 aa15.93■□□□□ 0.14
COL6A3-203ENST00000353578 CLIP1P30622 1438 aa15.92■□□□□ 0.14
COL6A3-203ENST00000353578 CFAP53Q96M91 514 aa15.92■□□□□ 0.14
COL6A3-203ENST00000353578 PHLDB1Q86UU1 1377 aa15.92■□□□□ 0.14
COL6A3-203ENST00000353578 TSPYL1Q9H0U9 437 aa15.91■□□□□ 0.14
COL6A3-203ENST00000353578 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
COL6A3-203ENST00000353578 IRX6P78412 446 aaPredicted RBP15.9■□□□□ 0.14
COL6A3-203ENST00000353578 ZNF771Q7L3S4 317 aaPredicted RBP15.89■□□□□ 0.13
COL6A3-203ENST00000353578 ISY1Q9ULR0 285 aaKnown RBP15.89■□□□□ 0.13
COL6A3-203ENST00000353578 CALD1Q05682 793 aaKnown RBP15.88■□□□□ 0.13
COL6A3-203ENST00000353578 PLCB2Q00722 1185 aa15.87■□□□□ 0.13
COL6A3-203ENST00000353578 CCDC70Q6NSX1 233 aa15.85■□□□□ 0.13
COL6A3-203ENST00000353578 NOC3LQ8WTT2 800 aaKnown RBP15.85■□□□□ 0.13
COL6A3-203ENST00000353578 KIF16BQ96L93 1317 aa15.85■□□□□ 0.13
COL6A3-203ENST00000353578 AMER1Q5JTC6 1135 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-203ENST00000353578 HMGN5P82970 282 aaKnown RBP15.84■□□□□ 0.13
COL6A3-203ENST00000353578 ACBD3Q9H3P7 528 aa15.83■□□□□ 0.12
COL6A3-203ENST00000353578 ATP6V1DQ9Y5K8 247 aa15.81■□□□□ 0.12
COL6A3-203ENST00000353578 ARGLU1Q9NWB6 273 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-203ENST00000353578 FAM43AQ8N2R8 423 aa15.8■□□□□ 0.12
COL6A3-203ENST00000353578 CHMP4CQ96CF2 233 aa15.8■□□□□ 0.12
COL6A3-203ENST00000353578 KNSTRNQ9Y448 316 aa15.8■□□□□ 0.12
COL6A3-203ENST00000353578 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
COL6A3-203ENST00000353578 MAPK8IP3Q9UPT6 1336 aa15.79■□□□□ 0.12
COL6A3-203ENST00000353578 TPM3P06753 285 aa15.79■□□□□ 0.12
COL6A3-203ENST00000353578 RGS3P49796 1198 aa15.78■□□□□ 0.12
COL6A3-203ENST00000353578 DHX8Q14562 1220 aaKnown RBP15.78■□□□□ 0.12
COL6A3-203ENST00000353578 USP8P40818 1118 aa15.77■□□□□ 0.12
COL6A3-203ENST00000353578 DIAPH3Q9NSV4 1193 aa15.77■□□□□ 0.11
COL6A3-203ENST00000353578 PDE3BQ13370 1112 aa15.76■□□□□ 0.11
COL6A3-203ENST00000353578 CEP164Q9UPV0 1460 aa15.76■□□□□ 0.11
COL6A3-203ENST00000353578 B4GALNT3Q6L9W6 998 aa15.76■□□□□ 0.11
COL6A3-203ENST00000353578 HMMRO75330 724 aa15.75■□□□□ 0.11
COL6A3-203ENST00000353578 ROCK2O75116 1388 aaKnown RBP15.74■□□□□ 0.11
COL6A3-203ENST00000353578 PMFBP1Q8TBY8 1022 aa15.74■□□□□ 0.11
COL6A3-203ENST00000353578 RWDD1Q9H446 243 aaPredicted RBP15.73■□□□□ 0.11
COL6A3-203ENST00000353578 KIF3AQ9Y496 699 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms