RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ADAMTS12P58397 1594 aa13.3□□□□□ -0.28
TRIM55-204ENST00000353317 SNAPC4Q5SXM2 1469 aa13.28□□□□□ -0.28
TRIM55-204ENST00000353317 CTTNBP2Q8WZ74 1663 aa13.28□□□□□ -0.28
TRIM55-204ENST00000353317 FHAD1B1AJZ9 1412 aa13.28□□□□□ -0.28
TRIM55-204ENST00000353317 VPS8Q8N3P4 1428 aa13.25□□□□□ -0.29
TRIM55-204ENST00000353317 TTBK1Q5TCY1 1321 aaPredicted RBP13.25□□□□□ -0.29
TRIM55-204ENST00000353317 P3H3Q8IVL6 736 aa13.25□□□□□ -0.29
TRIM55-204ENST00000353317 GRIN2AQ12879 1464 aa13.19□□□□□ -0.3
TRIM55-204ENST00000353317 MAGI1Q96QZ7 1491 aaPredicted RBP13.19□□□□□ -0.3
TRIM55-204ENST00000353317 FBLN2P98095 1184 aa13.18□□□□□ -0.3
TRIM55-204ENST00000353317 FHOD3Q2V2M9 1422 aa13.18□□□□□ -0.3
TRIM55-204ENST00000353317 SYNJ2O15056 1496 aa13.17□□□□□ -0.3
TRIM55-204ENST00000353317 CHMP7Q8WUX9 453 aaPredicted RBP13.16□□□□□ -0.3
TRIM55-204ENST00000353317 CEP170Q5SW79 1584 aa13.16□□□□□ -0.3
TRIM55-204ENST00000353317 SAMD9Q5K651 1589 aa13.14□□□□□ -0.31
TRIM55-204ENST00000353317 IQGAP2Q13576 1575 aa13.14□□□□□ -0.31
TRIM55-204ENST00000353317 KANK4Q5T7N3 995 aaPredicted RBP13.13□□□□□ -0.31
TRIM55-204ENST00000353317 SCAF1Q9H7N4 1312 aaKnown RBP13.12□□□□□ -0.31
TRIM55-204ENST00000353317 EFCAB5A4FU69 1503 aa13.12□□□□□ -0.31
TRIM55-204ENST00000353317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
TRIM55-204ENST00000353317 KIAA0586Q9BVV6 1533 aa13.11□□□□□ -0.31
TRIM55-204ENST00000353317 CHD1O14646 1710 aa13.1□□□□□ -0.31
TRIM55-204ENST00000353317 PCF11O94913 1555 aaKnown RBP13.1□□□□□ -0.31
TRIM55-204ENST00000353317 NUP160Q12769 1436 aa13.09□□□□□ -0.31
TRIM55-204ENST00000353317 DISP1Q96F81 1524 aa13.07□□□□□ -0.32
TRIM55-204ENST00000353317 UGGT2Q9NYU1 1516 aa13.07□□□□□ -0.32
TRIM55-204ENST00000353317 LRRIQ1Q96JM4 1722 aa13.07□□□□□ -0.32
TRIM55-204ENST00000353317 CCER1Q8TC90 406 aaPredicted RBP13.07□□□□□ -0.32
TRIM55-204ENST00000353317 APLP2Q06481 763 aa13.05□□□□□ -0.32
TRIM55-204ENST00000353317 ATP1B4Q9UN42 357 aaPredicted RBP13.04□□□□□ -0.32
TRIM55-204ENST00000353317 JPH4Q96JJ6 628 aa13.03□□□□□ -0.32
TRIM55-204ENST00000353317 KIAA0556O60303 1618 aa13.03□□□□□ -0.32
TRIM55-204ENST00000353317 TIAM1Q13009 1591 aa13.02□□□□□ -0.32
TRIM55-204ENST00000353317 CASKIN1Q8WXD9 1431 aa13.02□□□□□ -0.33
TRIM55-204ENST00000353317 FMN1Q68DA7 1419 aa13.01□□□□□ -0.33
TRIM55-204ENST00000353317 FYCO1Q9BQS8 1478 aa13□□□□□ -0.33
TRIM55-204ENST00000353317 CFAP43Q8NDM7 1665 aa12.98□□□□□ -0.33
TRIM55-204ENST00000353317 PELP1Q8IZL8 1130 aaKnown RBP12.98□□□□□ -0.33
TRIM55-204ENST00000353317 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
TRIM55-204ENST00000353317 LRRC9Q6ZRR7 1453 aa12.97□□□□□ -0.33
TRIM55-204ENST00000353317 ARID3CA6NKF2 412 aa12.96□□□□□ -0.33
TRIM55-204ENST00000353317 ERCC6L2Q5T890 1561 aa12.95□□□□□ -0.34
TRIM55-204ENST00000353317 MAGI3Q5TCQ9 1506 aa12.93□□□□□ -0.34
TRIM55-204ENST00000353317 PRG4Q92954 1404 aaPredicted RBP12.93□□□□□ -0.34
TRIM55-204ENST00000353317 PLB1Q6P1J6 1458 aa12.92□□□□□ -0.34
TRIM55-204ENST00000353317 CDK13Q14004 1512 aaKnown RBP12.92□□□□□ -0.34
TRIM55-204ENST00000353317 SHROOM2Q13796 1616 aa12.92□□□□□ -0.34
TRIM55-204ENST00000353317 ACIN1Q9UKV3 1341 aaKnown RBP12.92□□□□□ -0.34
TRIM55-204ENST00000353317 DIEXFQ68CQ4 756 aaKnown RBP12.91□□□□□ -0.34
TRIM55-204ENST00000353317 PHLDB1Q86UU1 1377 aa12.91□□□□□ -0.34
TRIM55-204ENST00000353317 CLASP1Q7Z460 1538 aa12.91□□□□□ -0.34
TRIM55-204ENST00000353317 NEUROD1Q13562 356 aa12.91□□□□□ -0.34
TRIM55-204ENST00000353317 EPRSP07814 1512 aaKnown RBP12.9□□□□□ -0.34
TRIM55-204ENST00000353317 NUP153P49790 1475 aaKnown RBP12.9□□□□□ -0.34
TRIM55-204ENST00000353317 CARMIL2Q6F5E8 1435 aa12.89□□□□□ -0.35
TRIM55-204ENST00000353317 RAPGEF6Q8TEU7 1601 aa12.89□□□□□ -0.35
TRIM55-204ENST00000353317 HECW1Q76N89 1606 aa12.89□□□□□ -0.35
TRIM55-204ENST00000353317 HNRNPUL2Q1KMD3 747 aaKnown RBP12.88□□□□□ -0.35
TRIM55-204ENST00000353317 RRBP1Q9P2E9 1410 aaKnown RBP12.86□□□□□ -0.35
TRIM55-204ENST00000353317 MTUS2Q5JR59 1369 aa12.85□□□□□ -0.35
TRIM55-204ENST00000353317 ABCA8O94911 1581 aa12.84□□□□□ -0.35
TRIM55-204ENST00000353317 CCDC18Q5T9S5 1454 aa12.83□□□□□ -0.36
TRIM55-204ENST00000353317 PTPRGP23470 1445 aa12.82□□□□□ -0.36
TRIM55-204ENST00000353317 CCNB3Q8WWL7 1395 aa12.82□□□□□ -0.36
TRIM55-204ENST00000353317 NCOA2Q15596 1464 aa12.81□□□□□ -0.36
TRIM55-204ENST00000353317 ARHGEF11O15085 1522 aa12.8□□□□□ -0.36
TRIM55-204ENST00000353317 EHBP1L1Q8N3D4 1523 aa12.8□□□□□ -0.36
TRIM55-204ENST00000353317 ATP10BO94823 1461 aa12.79□□□□□ -0.36
TRIM55-204ENST00000353317 ITGAEP38570 1179 aa12.79□□□□□ -0.36
TRIM55-204ENST00000353317 SUPT6HQ7KZ85 1726 aaKnown RBP12.79□□□□□ -0.36
TRIM55-204ENST00000353317 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
TRIM55-204ENST00000353317 GTF3C3Q9Y5Q9 886 aa12.78□□□□□ -0.36
TRIM55-204ENST00000353317 OSCARQ8IYS5 282 aa12.77□□□□□ -0.36
TRIM55-204ENST00000353317 ZNF316A6NFI3 1004 aaPredicted RBP12.76□□□□□ -0.37
TRIM55-204ENST00000353317 FAM50AQ14320 339 aaKnown RBP12.75□□□□□ -0.37
TRIM55-204ENST00000353317 FGD6Q6ZV73 1430 aa12.75□□□□□ -0.37
TRIM55-204ENST00000353317 UACAQ9BZF9 1416 aa12.75□□□□□ -0.37
TRIM55-204ENST00000353317 KIF14Q15058 1648 aa12.74□□□□□ -0.37
TRIM55-204ENST00000353317 MYOM3Q5VTT5 1437 aa12.74□□□□□ -0.37
TRIM55-204ENST00000353317 TROQ12816 1431 aaPredicted RBP12.72□□□□□ -0.37
TRIM55-204ENST00000353317 PTPRKQ15262 1439 aa12.71□□□□□ -0.37
TRIM55-204ENST00000353317 ABCC2Q92887 1545 aa12.7□□□□□ -0.38
TRIM55-204ENST00000353317 PTPN23Q9H3S7 1636 aa12.69□□□□□ -0.38
TRIM55-204ENST00000353317 ZNF644Q9H582 1327 aaPredicted RBP12.69□□□□□ -0.38
TRIM55-204ENST00000353317 CDK11AQ9UQ88 783 aaPredicted RBP12.69□□□□□ -0.38
TRIM55-204ENST00000353317 PLEKHD1A6NEE1 506 aa12.68□□□□□ -0.38
TRIM55-204ENST00000353317 ADCY10Q96PN6 1610 aa12.68□□□□□ -0.38
TRIM55-204ENST00000353317 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.66□□□□□ -0.38
TRIM55-204ENST00000353317 ZCCHC11Q5TAX3 1644 aaKnown RBP12.66□□□□□ -0.38
TRIM55-204ENST00000353317 ABCC10Q5T3U5 1492 aa12.65□□□□□ -0.38
TRIM55-204ENST00000353317 GPATCH8Q9UKJ3 1502 aaKnown RBP12.65□□□□□ -0.38
TRIM55-204ENST00000353317 UHRF1BP1LA0JNW5 1464 aa12.65□□□□□ -0.39
TRIM55-204ENST00000353317 TCOF1Q13428 1488 aaKnown RBP12.65□□□□□ -0.39
TRIM55-204ENST00000353317 CDC42BPAQ5VT25 1732 aa12.64□□□□□ -0.39
TRIM55-204ENST00000353317 KDM5BQ9UGL1 1544 aa12.64□□□□□ -0.39
TRIM55-204ENST00000353317 MIER1Q8N108 512 aa12.63□□□□□ -0.39
TRIM55-204ENST00000353317 YTHDC1Q96MU7 727 aaKnown RBP12.63□□□□□ -0.39
TRIM55-204ENST00000353317 MIA2Q96PC5 1412 aa12.62□□□□□ -0.39
TRIM55-204ENST00000353317 RAB3GAP2Q9H2M9 1393 aa12.62□□□□□ -0.39
TRIM55-204ENST00000353317 KCNH8Q96L42 1107 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms