RNA–Protein interactions for RNA: ENST00000351948.8

SMC6-201, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,173 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-201ENST00000351948 PDS5BQ9NTI5 1447 aa19.01■□□□□ 0.63
SMC6-201ENST00000351948 CADPSQ9ULU8 1353 aa18.97■□□□□ 0.63
SMC6-201ENST00000351948 TOP2AP11388 1531 aaKnown RBP18.97■□□□□ 0.63
SMC6-201ENST00000351948 BCL11AQ9H165 835 aa18.95■□□□□ 0.62
SMC6-201ENST00000351948 RGL3Q3MIN7 710 aa18.95■□□□□ 0.62
SMC6-201ENST00000351948 CLSPNQ9HAW4 1339 aa18.94■□□□□ 0.62
SMC6-201ENST00000351948 SMARCA4P51532 1647 aa18.92■□□□□ 0.62
SMC6-201ENST00000351948 DAXXQ9UER7 740 aaPredicted RBP18.9■□□□□ 0.62
SMC6-201ENST00000351948 ARID4BQ4LE39 1312 aaPredicted RBP18.89■□□□□ 0.61
SMC6-201ENST00000351948 GTF3C3Q9Y5Q9 886 aa18.88■□□□□ 0.61
SMC6-201ENST00000351948 SALL2Q9Y467 1007 aaPredicted RBP18.87■□□□□ 0.61
SMC6-201ENST00000351948 KANK4Q5T7N3 995 aaPredicted RBP18.84■□□□□ 0.61
SMC6-201ENST00000351948 PLEKHG5O94827 1062 aa18.83■□□□□ 0.61
SMC6-201ENST00000351948 FAM9BQ8IZU0 186 aa18.83■□□□□ 0.61
SMC6-201ENST00000351948 NEFMP07197 916 aa18.81■□□□□ 0.6
SMC6-201ENST00000351948 TRHP20396 242 aaPredicted RBP18.81■□□□□ 0.6
SMC6-201ENST00000351948 SIN3AQ96ST3 1273 aa18.8■□□□□ 0.6
SMC6-201ENST00000351948 CCNB3Q8WWL7 1395 aa18.78■□□□□ 0.6
SMC6-201ENST00000351948 CANXP27824 592 aaKnown RBP18.78■□□□□ 0.6
SMC6-201ENST00000351948 FHAD1B1AJZ9 1412 aa18.76■□□□□ 0.59
SMC6-201ENST00000351948 PPP1R15AO75807 674 aaPredicted RBP18.76■□□□□ 0.59
SMC6-201ENST00000351948 RUSC2Q8N2Y8 1516 aa18.76■□□□□ 0.59
SMC6-201ENST00000351948 FANCD2Q9BXW9 1451 aa18.74■□□□□ 0.59
SMC6-201ENST00000351948 HNRNPUQ00839 825 aaKnown RBP eCLIP18.74■□□□□ 0.59
SMC6-201ENST00000351948 MLECQ14165 292 aa18.73■□□□□ 0.59
SMC6-201ENST00000351948 SENP3-EIF4A1A0A087X0R7 540 aa18.71■□□□□ 0.59
SMC6-201ENST00000351948 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.581e-6■■■■■ 29.4
SMC6-201ENST00000351948 SCAF1Q9H7N4 1312 aaKnown RBP18.69■□□□□ 0.58
SMC6-201ENST00000351948 VPS8Q8N3P4 1428 aa18.68■□□□□ 0.58
SMC6-201ENST00000351948 RAPGEF2Q9Y4G8 1499 aa18.68■□□□□ 0.58
SMC6-201ENST00000351948 FHOD3Q2V2M9 1422 aa18.67■□□□□ 0.58
SMC6-201ENST00000351948 TMC1Q8TDI8 760 aa18.67■□□□□ 0.58
SMC6-201ENST00000351948 MIER1Q8N108 512 aa18.66■□□□□ 0.58
SMC6-201ENST00000351948 CARMIL2Q6F5E8 1435 aa18.65■□□□□ 0.58
SMC6-201ENST00000351948 JPH4Q96JJ6 628 aa18.64■□□□□ 0.57
SMC6-201ENST00000351948 FOXD1Q16676 465 aa18.64■□□□□ 0.57
SMC6-201ENST00000351948 MRS2Q9HD23 443 aa18.63■□□□□ 0.57
SMC6-201ENST00000351948 C14orf37Q86TY3 774 aa18.62■□□□□ 0.57
SMC6-201ENST00000351948 ACIN1Q9UKV3 1341 aaKnown RBP18.61■□□□□ 0.57
SMC6-201ENST00000351948 ZBTB7CA1YPR0 619 aa18.6■□□□□ 0.57
SMC6-201ENST00000351948 GGT6Q6P531 493 aa18.6■□□□□ 0.57
SMC6-201ENST00000351948 ZBTB47Q9UFB7 747 aaPredicted RBP18.59■□□□□ 0.57
SMC6-201ENST00000351948 CARD11Q9BXL7 1154 aa18.59■□□□□ 0.57
SMC6-201ENST00000351948 RAD54L2Q9Y4B4 1467 aa18.59■□□□□ 0.57
SMC6-201ENST00000351948 ARHGAP35Q9NRY4 1499 aa18.54■□□□□ 0.56
SMC6-201ENST00000351948 FMN1Q68DA7 1419 aa18.53■□□□□ 0.56
SMC6-201ENST00000351948 FKBP8Q14318 412 aa18.53■□□□□ 0.56
SMC6-201ENST00000351948 NCAPD3P42695 1498 aa18.53■□□□□ 0.56
SMC6-201ENST00000351948 WDR43Q15061 677 aaKnown RBP eCLIP18.53■□□□□ 0.56
SMC6-201ENST00000351948 DCAF11Q8TEB1 546 aa18.53■□□□□ 0.56
SMC6-201ENST00000351948 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
SMC6-201ENST00000351948 HNRNPMP52272 730 aaKnown RBP eCLIP18.52■□□□□ 0.55
SMC6-201ENST00000351948 NESP48681 1621 aa18.5■□□□□ 0.55
SMC6-201ENST00000351948 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
SMC6-201ENST00000351948 CYB5RLQ6IPT4 315 aa18.49■□□□□ 0.55
SMC6-201ENST00000351948 PKD2Q13563 968 aa18.48■□□□□ 0.55
SMC6-201ENST00000351948 A0A0G2JS52 829 aa18.48■□□□□ 0.55
SMC6-201ENST00000351948 PPM1GO15355 546 aaPredicted RBP18.47■□□□□ 0.55
SMC6-201ENST00000351948 EFCAB2Q5VUJ9 269 aa18.47■□□□□ 0.55
SMC6-201ENST00000351948 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.552e-6■■■□□ 16
SMC6-201ENST00000351948 SAFB2Q14151 953 aaKnown RBP eCLIP18.45■□□□□ 0.54
SMC6-201ENST00000351948 IGF1RP08069 1367 aa18.45■□□□□ 0.54
SMC6-201ENST00000351948 IRX6P78412 446 aaPredicted RBP18.45■□□□□ 0.54
SMC6-201ENST00000351948 POGKQ9P215 609 aa18.44■□□□□ 0.54
SMC6-201ENST00000351948 SETD5Q9C0A6 1442 aa18.43■□□□□ 0.54
SMC6-201ENST00000351948 TNNT2P45379 298 aaPredicted RBP18.42■□□□□ 0.54
SMC6-201ENST00000351948 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
SMC6-201ENST00000351948 LMOD2Q6P5Q4 547 aa18.4■□□□□ 0.54
SMC6-201ENST00000351948 KIF3BO15066 747 aa18.39■□□□□ 0.53
SMC6-201ENST00000351948 RAB3GAP2Q9H2M9 1393 aa18.39■□□□□ 0.53
SMC6-201ENST00000351948 KNSTRNQ9Y448 316 aa18.38■□□□□ 0.53
SMC6-201ENST00000351948 NUP155O75694 1391 aa18.38■□□□□ 0.53
SMC6-201ENST00000351948 KANK1Q14678 1352 aa18.38■□□□□ 0.53
SMC6-201ENST00000351948 OSCARQ8IYS5 282 aa18.37■□□□□ 0.53
SMC6-201ENST00000351948 CC2D2AQ9P2K1 1620 aa18.37■□□□□ 0.53
SMC6-201ENST00000351948 PTPRGP23470 1445 aa18.36■□□□□ 0.53
SMC6-201ENST00000351948 MPHOSPH9Q99550 1183 aa18.36■□□□□ 0.53
SMC6-201ENST00000351948 STK26Q9P289 416 aa18.36■□□□□ 0.53
SMC6-201ENST00000351948 NPM2Q86SE8 214 aaKnown RBP18.35■□□□□ 0.53
SMC6-201ENST00000351948 CC2D1BQ5T0F9 858 aaKnown RBP18.34■□□□□ 0.53
SMC6-201ENST00000351948 NEUROD2Q15784 382 aa18.33■□□□□ 0.52
SMC6-201ENST00000351948 NUTM2DQ5VT03 806 aaPredicted RBP18.33■□□□□ 0.52
SMC6-201ENST00000351948 HAP1P54257 671 aaPredicted RBP18.32■□□□□ 0.52
SMC6-201ENST00000351948 SOX12O15370 315 aa18.31■□□□□ 0.52
SMC6-201ENST00000351948 SPAG9O60271 1321 aaKnown RBP18.3■□□□□ 0.52
SMC6-201ENST00000351948 RTL5Q5HYW3 569 aaPredicted RBP18.3■□□□□ 0.52
SMC6-201ENST00000351948 CDCA8Q53HL2 280 aa18.3■□□□□ 0.52
SMC6-201ENST00000351948 ANKRD30AQ9BXX3 1397 aa18.3■□□□□ 0.52
SMC6-201ENST00000351948 CFTRP13569 1480 aa18.27■□□□□ 0.52
SMC6-201ENST00000351948 CCDC18Q5T9S5 1454 aa18.27■□□□□ 0.51
SMC6-201ENST00000351948 HSPA5P11021 654 aaKnown RBP18.25■□□□□ 0.51
SMC6-201ENST00000351948 SRPK2P78362 688 aaKnown RBP18.25■□□□□ 0.51
SMC6-201ENST00000351948 CCDC136Q96JN2 1154 aa18.24■□□□□ 0.51
SMC6-201ENST00000351948 ZNF644Q9H582 1327 aaPredicted RBP18.22■□□□□ 0.51
SMC6-201ENST00000351948 WASHC2CQ9Y4E1 1318 aa18.22■□□□□ 0.51
SMC6-201ENST00000351948 SYNJ1O43426 1573 aa18.21■□□□□ 0.51
SMC6-201ENST00000351948 CFAP53Q96M91 514 aa18.21■□□□□ 0.51
SMC6-201ENST00000351948 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
SMC6-201ENST00000351948 TMF1P82094 1093 aa18.21■□□□□ 0.51
SMC6-201ENST00000351948 L3MBTL2Q969R5 705 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms