RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 GRIN2AQ12879 1464 aa14.57□□□□□ -0.08
USP4-202ENST00000351842 MAGI1Q96QZ7 1491 aaPredicted RBP14.57□□□□□ -0.08
USP4-202ENST00000351842 ADAMTS12P58397 1594 aa14.57□□□□□ -0.08
USP4-202ENST00000351842 JPH4Q96JJ6 628 aa14.56□□□□□ -0.08
USP4-202ENST00000351842 CLIP1P30622 1438 aa14.56□□□□□ -0.08
USP4-202ENST00000351842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.55□□□□□ -0.08
USP4-202ENST00000351842 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
USP4-202ENST00000351842 TNIKQ9UKE5 1360 aa14.55□□□□□ -0.08
USP4-202ENST00000351842 KIF21BO75037 1637 aa14.53□□□□□ -0.08
USP4-202ENST00000351842 CUL7Q14999 1698 aa14.53□□□□□ -0.08
USP4-202ENST00000351842 CHD1O14646 1710 aa14.51□□□□□ -0.09
USP4-202ENST00000351842 FHOD3Q2V2M9 1422 aa14.51□□□□□ -0.09
USP4-202ENST00000351842 APLP2Q06481 763 aa14.47□□□□□ -0.09
USP4-202ENST00000351842 CEP170Q5SW79 1584 aa14.47□□□□□ -0.09
USP4-202ENST00000351842 CYB5RLQ6IPT4 315 aa14.45□□□□□ -0.1
USP4-202ENST00000351842 PRG4Q92954 1404 aaPredicted RBP14.43□□□□□ -0.1
USP4-202ENST00000351842 IQGAP2Q13576 1575 aa14.41□□□□□ -0.1
USP4-202ENST00000351842 KIAA0586Q9BVV6 1533 aa14.4□□□□□ -0.1
USP4-202ENST00000351842 ARAP1Q96P48 1450 aa14.4□□□□□ -0.1
USP4-202ENST00000351842 ARHGAP35Q9NRY4 1499 aa14.4□□□□□ -0.1
USP4-202ENST00000351842 NUP160Q12769 1436 aa14.38□□□□□ -0.11
USP4-202ENST00000351842 ERCC6L2Q5T890 1561 aa14.37□□□□□ -0.11
USP4-202ENST00000351842 CTTNBP2Q8WZ74 1663 aa14.36□□□□□ -0.11
USP4-202ENST00000351842 CARMIL2Q6F5E8 1435 aa14.34□□□□□ -0.11
USP4-202ENST00000351842 PTPRGP23470 1445 aa14.32□□□□□ -0.12
USP4-202ENST00000351842 KCNH8Q96L42 1107 aa14.31□□□□□ -0.12
USP4-202ENST00000351842 KANK4Q5T7N3 995 aaPredicted RBP14.3□□□□□ -0.12
USP4-202ENST00000351842 PLB1Q6P1J6 1458 aa14.3□□□□□ -0.12
USP4-202ENST00000351842 DISP1Q96F81 1524 aa14.29□□□□□ -0.12
USP4-202ENST00000351842 VPS8Q8N3P4 1428 aa14.27□□□□□ -0.13
USP4-202ENST00000351842 ITGAEP38570 1179 aa14.26□□□□□ -0.13
USP4-202ENST00000351842 KIAA0556O60303 1618 aa14.23□□□□□ -0.13
USP4-202ENST00000351842 PCGF6Q9BYE7 350 aa14.23□□□□□ -0.13
USP4-202ENST00000351842 NPM1P06748 294 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP4-202ENST00000351842 UGGT2Q9NYU1 1516 aa14.22□□□□□ -0.13
USP4-202ENST00000351842 FMN1Q68DA7 1419 aa14.22□□□□□ -0.13
USP4-202ENST00000351842 CLASP1Q7Z460 1538 aa14.22□□□□□ -0.13
USP4-202ENST00000351842 CDK13Q14004 1512 aaKnown RBP14.2□□□□□ -0.14
USP4-202ENST00000351842 ARHGEF11O15085 1522 aa14.19□□□□□ -0.14
USP4-202ENST00000351842 MTUS2Q5JR59 1369 aa14.19□□□□□ -0.14
USP4-202ENST00000351842 PCF11O94913 1555 aaKnown RBP14.19□□□□□ -0.14
USP4-202ENST00000351842 EFCAB5A4FU69 1503 aa14.19□□□□□ -0.14
USP4-202ENST00000351842 ZNF777Q9ULD5 760 aaPredicted RBP14.19□□□□□ -0.14
USP4-202ENST00000351842 SAMD9Q5K651 1589 aa14.17□□□□□ -0.14
USP4-202ENST00000351842 PLEKHD1A6NEE1 506 aa14.16□□□□□ -0.14
USP4-202ENST00000351842 FAM50AQ14320 339 aaKnown RBP14.15□□□□□ -0.14
USP4-202ENST00000351842 UACAQ9BZF9 1416 aa14.13□□□□□ -0.15
USP4-202ENST00000351842 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
USP4-202ENST00000351842 CDK11AQ9UQ88 783 aaPredicted RBP14.13□□□□□ -0.15
USP4-202ENST00000351842 DNAJC5Q9H3Z4 198 aa14.12□□□□□ -0.15
USP4-202ENST00000351842 CASKIN1Q8WXD9 1431 aa14.11□□□□□ -0.15
USP4-202ENST00000351842 NUP153P49790 1475 aaKnown RBP14.1□□□□□ -0.15
USP4-202ENST00000351842 RIMBP3CA6NJZ7 1639 aa14.1□□□□□ -0.15
USP4-202ENST00000351842 RIMBP3BA6NNM3 1639 aa14.1□□□□□ -0.15
USP4-202ENST00000351842 RIMBP3Q9UFD9 1639 aa14.1□□□□□ -0.15
USP4-202ENST00000351842 SHROOM2Q13796 1616 aa14.09□□□□□ -0.15
USP4-202ENST00000351842 EPRSP07814 1512 aaKnown RBP14.08□□□□□ -0.15
USP4-202ENST00000351842 RAPGEF6Q8TEU7 1601 aa14.07□□□□□ -0.16
USP4-202ENST00000351842 FYCO1Q9BQS8 1478 aa14.07□□□□□ -0.16
USP4-202ENST00000351842 ATP10BO94823 1461 aa14.06□□□□□ -0.16
USP4-202ENST00000351842 MYT1LQ9UL68 1186 aa14.05□□□□□ -0.16
USP4-202ENST00000351842 HECW1Q76N89 1606 aa14.03□□□□□ -0.16
USP4-202ENST00000351842 FAM69CQ0P6D2 419 aa14.02□□□□□ -0.16
USP4-202ENST00000351842 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.16
USP4-202ENST00000351842 ZNF644Q9H582 1327 aaPredicted RBP14.02□□□□□ -0.16
USP4-202ENST00000351842 TIAM1Q13009 1591 aa14.01□□□□□ -0.17
USP4-202ENST00000351842 LRRC9Q6ZRR7 1453 aa14□□□□□ -0.17
USP4-202ENST00000351842 TRIM26Q12899 539 aaPredicted RBP14□□□□□ -0.17
USP4-202ENST00000351842 CFDP1Q9UEE9 299 aaPredicted RBP14□□□□□ -0.17
USP4-202ENST00000351842 ABCC2Q92887 1545 aa14□□□□□ -0.17
USP4-202ENST00000351842 PHLDB1Q86UU1 1377 aa13.99□□□□□ -0.17
USP4-202ENST00000351842 ABCA8O94911 1581 aa13.99□□□□□ -0.17
USP4-202ENST00000351842 MAGI3Q5TCQ9 1506 aa13.99□□□□□ -0.17
USP4-202ENST00000351842 LRRIQ1Q96JM4 1722 aa13.99□□□□□ -0.17
USP4-202ENST00000351842 ADCY10Q96PN6 1610 aa13.99□□□□□ -0.17
USP4-202ENST00000351842 CCNB3Q8WWL7 1395 aa13.97□□□□□ -0.17
USP4-202ENST00000351842 ASXL2Q76L83 1435 aa13.97□□□□□ -0.17
USP4-202ENST00000351842 CCDC18Q5T9S5 1454 aa13.95□□□□□ -0.18
USP4-202ENST00000351842 NCOA2Q15596 1464 aa13.94□□□□□ -0.18
USP4-202ENST00000351842 HNRNPMP52272 730 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP4-202ENST00000351842 TROQ12816 1431 aaPredicted RBP13.93□□□□□ -0.18
USP4-202ENST00000351842 ZCCHC11Q5TAX3 1644 aaKnown RBP13.92□□□□□ -0.18
USP4-202ENST00000351842 KIF14Q15058 1648 aa13.92□□□□□ -0.18
USP4-202ENST00000351842 RRP7BPQ9NSQ0 103 aa13.9□□□□□ -0.18
USP4-202ENST00000351842 KDM5BQ9UGL1 1544 aa13.89□□□□□ -0.19
USP4-202ENST00000351842 WDR7Q9Y4E6 1490 aa13.87□□□□□ -0.19
USP4-202ENST00000351842 CFAP43Q8NDM7 1665 aa13.86□□□□□ -0.19
USP4-202ENST00000351842 EHBP1L1Q8N3D4 1523 aa13.86□□□□□ -0.19
USP4-202ENST00000351842 AFAP1Q8N556 730 aa13.85□□□□□ -0.19
USP4-202ENST00000351842 UHRF1BP1LA0JNW5 1464 aa13.85□□□□□ -0.19
USP4-202ENST00000351842 RAPGEF3O95398 923 aa13.85□□□□□ -0.19
USP4-202ENST00000351842 TSPOAP1O95153 1857 aa13.84□□□□□ -0.19
USP4-202ENST00000351842 ARHGAP5Q13017 1502 aa13.84□□□□□ -0.19
USP4-202ENST00000351842 SUPT6HQ7KZ85 1726 aaKnown RBP13.83□□□□□ -0.19
USP4-202ENST00000351842 EFCAB2Q5VUJ9 269 aa13.83□□□□□ -0.19
USP4-202ENST00000351842 MYOM3Q5VTT5 1437 aa13.83□□□□□ -0.2
USP4-202ENST00000351842 CD109Q6YHK3 1445 aa13.82□□□□□ -0.2
USP4-202ENST00000351842 FGD6Q6ZV73 1430 aa13.82□□□□□ -0.2
USP4-202ENST00000351842 TTC37Q6PGP7 1564 aa13.81□□□□□ -0.2
USP4-202ENST00000351842 GPATCH8Q9UKJ3 1502 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms