RNA–Protein interactions for RNA: ENST00000348990.9

APP-202, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 3,355 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-202ENST00000348990 KIF27Q86VH2 1401 aa24.95■■□□□ 1.58
APP-202ENST00000348990 CDK11AQ9UQ88 783 aaPredicted RBP24.93■■□□□ 1.58
APP-202ENST00000348990 WDR97A6NE52 1622 aa24.9■■□□□ 1.58
APP-202ENST00000348990 CCER2I3L3R5 266 aa24.89■■□□□ 1.57
APP-202ENST00000348990 TOP2BQ02880 1626 aa24.87■■□□□ 1.57
APP-202ENST00000348990 ERICH3Q5RHP9 1530 aa24.86■■□□□ 1.57
APP-202ENST00000348990 ARHGAP35Q9NRY4 1499 aa24.85■■□□□ 1.57
APP-202ENST00000348990 TONSLQ96HA7 1378 aa24.85■■□□□ 1.57
APP-202ENST00000348990 MAPKBP1O60336 1514 aa24.84■■□□□ 1.57
APP-202ENST00000348990 CUX2O14529 1486 aa24.81■■□□□ 1.56
APP-202ENST00000348990 MSH5O43196 834 aa24.81■■□□□ 1.56
APP-202ENST00000348990 BICRAQ9NZM4 1560 aa24.79■■□□□ 1.56
APP-202ENST00000348990 PHLDB1Q86UU1 1377 aa24.78■■□□□ 1.56
APP-202ENST00000348990 PEG3Q9GZU2 1588 aa24.78■■□□□ 1.56
APP-202ENST00000348990 TIMELESSQ9UNS1 1208 aa24.73■■□□□ 1.55
APP-202ENST00000348990 CNGB1Q14028 1251 aaPredicted RBP24.72■■□□□ 1.55
APP-202ENST00000348990 FAM9BQ8IZU0 186 aa24.66■■□□□ 1.54
APP-202ENST00000348990 CUX1P39880 1505 aa24.65■■□□□ 1.54
APP-202ENST00000348990 LRRC9Q6ZRR7 1453 aa24.63■■□□□ 1.53
APP-202ENST00000348990 CARMIL1Q5VZK9 1371 aa24.63■■□□□ 1.53
APP-202ENST00000348990 B4GALNT3Q6L9W6 998 aa24.6■■□□□ 1.53
APP-202ENST00000348990 IGF1RP08069 1367 aa24.59■■□□□ 1.53
APP-202ENST00000348990 BIVM-ERCC5R4GMW8 1640 aa24.59■■□□□ 1.53
APP-202ENST00000348990 TIAM1Q13009 1591 aa24.58■■□□□ 1.53
APP-202ENST00000348990 FANCIQ9NVI1 1328 aa24.57■■□□□ 1.52
APP-202ENST00000348990 NBR1Q14596 966 aa24.54■■□□□ 1.52
APP-202ENST00000348990 PPP4R2Q9NY27 417 aa24.54■■□□□ 1.52
APP-202ENST00000348990 CHIC2Q9UKJ5 165 aa24.53■■□□□ 1.52
APP-202ENST00000348990 FHAD1B1AJZ9 1412 aa24.52■■□□□ 1.52
APP-202ENST00000348990 HSPA5P11021 654 aaKnown RBP24.51■■□□□ 1.51
APP-202ENST00000348990 MRS2Q9HD23 443 aa24.5■■□□□ 1.51
APP-202ENST00000348990 FHOD3Q2V2M9 1422 aa24.49■■□□□ 1.51
APP-202ENST00000348990 RRP7BPQ9NSQ0 103 aa24.49■■□□□ 1.51
APP-202ENST00000348990 POLR3GLQ9BT43 218 aa24.49■■□□□ 1.51
APP-202ENST00000348990 SENP3-EIF4A1A0A087X0R7 540 aa24.47■■□□□ 1.51
APP-202ENST00000348990 CCDC184Q52MB2 194 aa24.47■■□□□ 1.51
APP-202ENST00000348990 MTUS2Q5JR59 1369 aa24.46■■□□□ 1.51
APP-202ENST00000348990 DEKP35659 375 aaKnown RBP24.45■■□□□ 1.5
APP-202ENST00000348990 EIF4G2P78344 907 aaKnown RBP eCLIP24.44■■□□□ 1.5
APP-202ENST00000348990 WASHC2AQ641Q2 1341 aa24.41■■□□□ 1.5
APP-202ENST00000348990 CCDC18Q5T9S5 1454 aa24.39■■□□□ 1.5
APP-202ENST00000348990 MAP3K1Q13233 1512 aa24.35■■□□□ 1.49
APP-202ENST00000348990 FOXD1Q16676 465 aa24.34■■□□□ 1.49
APP-202ENST00000348990 ARID3CA6NKF2 412 aa24.33■■□□□ 1.49
APP-202ENST00000348990 NOP58Q9Y2X3 529 aaKnown RBP24.33■■□□□ 1.48
APP-202ENST00000348990 ERICH6BQ5W0A0 696 aa24.31■■□□□ 1.48
APP-202ENST00000348990 CFTRP13569 1480 aa24.31■■□□□ 1.48
APP-202ENST00000348990 FGD6Q6ZV73 1430 aa24.3■■□□□ 1.48
APP-202ENST00000348990 MYT1LQ9UL68 1186 aa24.3■■□□□ 1.48
APP-202ENST00000348990 PCF11O94913 1555 aaKnown RBP24.3■■□□□ 1.48
APP-202ENST00000348990 UACAQ9BZF9 1416 aa24.29■■□□□ 1.48
APP-202ENST00000348990 CCDC136Q96JN2 1154 aa24.28■■□□□ 1.48
APP-202ENST00000348990 PRKRIP1Q9H875 184 aaPredicted RBP24.28■■□□□ 1.48
APP-202ENST00000348990 RTL5Q5HYW3 569 aaPredicted RBP24.27■■□□□ 1.48
APP-202ENST00000348990 NCAPD3P42695 1498 aa24.26■■□□□ 1.47
APP-202ENST00000348990 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
APP-202ENST00000348990 ANP32AP39687 249 aaKnown RBP24.25■■□□□ 1.47
APP-202ENST00000348990 L3MBTL2Q969R5 705 aa24.25■■□□□ 1.47
APP-202ENST00000348990 PAK3O75914 559 aaPredicted RBP24.25■■□□□ 1.47
APP-202ENST00000348990 ZNF326Q5BKZ1 582 aaKnown RBP24.24■■□□□ 1.47
APP-202ENST00000348990 PTPRKQ15262 1439 aa24.23■■□□□ 1.47
APP-202ENST00000348990 C11orf95C9JLR9 678 aaPredicted RBP24.23■■□□□ 1.47
APP-202ENST00000348990 NPM2Q86SE8 214 aaKnown RBP24.2■■□□□ 1.46
APP-202ENST00000348990 HFM1A2PYH4 1435 aa24.19■■□□□ 1.46
APP-202ENST00000348990 FMN1Q68DA7 1419 aa24.18■■□□□ 1.46
APP-202ENST00000348990 AQRO60306 1485 aaKnown RBP eCLIP24.18■■□□□ 1.46
APP-202ENST00000348990 ZBED9Q6R2W3 1325 aa24.18■■□□□ 1.46
APP-202ENST00000348990 CASKIN1Q8WXD9 1431 aa24.17■■□□□ 1.46
APP-202ENST00000348990 ZBTB47Q9UFB7 747 aaPredicted RBP24.17■■□□□ 1.46
APP-202ENST00000348990 NAIPQ13075 1403 aa24.16■■□□□ 1.46
APP-202ENST00000348990 MPHOSPH9Q99550 1183 aa24.15■■□□□ 1.46
APP-202ENST00000348990 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.15■■□□□ 1.46
APP-202ENST00000348990 CNTLNQ9NXG0 1405 aa24.14■■□□□ 1.46
APP-202ENST00000348990 FYCO1Q9BQS8 1478 aa24.14■■□□□ 1.46
APP-202ENST00000348990 CADPSQ9ULU8 1353 aa24.13■■□□□ 1.45
APP-202ENST00000348990 HMGXB3Q12766 1538 aa24.11■■□□□ 1.45
APP-202ENST00000348990 CCDC7Q96M83 1385 aa24.1■■□□□ 1.45
APP-202ENST00000348990 RAD54L2Q9Y4B4 1467 aa24.1■■□□□ 1.45
APP-202ENST00000348990 SALL2Q9Y467 1007 aaPredicted RBP24.08■■□□□ 1.45
APP-202ENST00000348990 CFAP43Q8NDM7 1665 aa24.07■■□□□ 1.44
APP-202ENST00000348990 AKNAQ7Z591 1439 aa24.07■■□□□ 1.44
APP-202ENST00000348990 PTPN23Q9H3S7 1636 aa24.06■■□□□ 1.44
APP-202ENST00000348990 NCOA2Q15596 1464 aa24.05■■□□□ 1.44
APP-202ENST00000348990 MYOM3Q5VTT5 1437 aa24.05■■□□□ 1.44
APP-202ENST00000348990 NBPF8Q3BBV2 869 aa24.05■■□□□ 1.44
APP-202ENST00000348990 IPO9Q96P70 1041 aaKnown RBP24.04■■□□□ 1.44
APP-202ENST00000348990 SLC4A1APQ9BWU0 796 aaKnown RBP24.04■■□□□ 1.44
APP-202ENST00000348990 KIF7Q2M1P5 1343 aa24.04■■□□□ 1.44
APP-202ENST00000348990 TMC1Q8TDI8 760 aa24.02■■□□□ 1.44
APP-202ENST00000348990 NUDCQ9Y266 331 aa24.01■■□□□ 1.43
APP-202ENST00000348990 RTN4Q9NQC3 1192 aaKnown RBP24■■□□□ 1.43
APP-202ENST00000348990 LAS1LQ9Y4W2 734 aaKnown RBP23.98■■□□□ 1.43
APP-202ENST00000348990 PRKCSHP14314 528 aaPredicted RBP23.97■■□□□ 1.43
APP-202ENST00000348990 TDRD9Q8NDG6 1382 aaKnown RBP23.95■■□□□ 1.42
APP-202ENST00000348990 EFCAB5A4FU69 1503 aa23.93■■□□□ 1.42
APP-202ENST00000348990 NCOA1Q15788 1441 aa23.92■■□□□ 1.42
APP-202ENST00000348990 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
APP-202ENST00000348990 KDM5BQ9UGL1 1544 aa23.89■■□□□ 1.41
APP-202ENST00000348990 NEFMP07197 916 aa23.86■■□□□ 1.41
APP-202ENST00000348990 ANO8Q9HCE9 1232 aaPredicted RBP23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms