RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 MAPKBP1O60336 1514 aa21.36■■□□□ 1.01
LMNA-201ENST00000347559 ANO8Q9HCE9 1232 aaPredicted RBP21.36■■□□□ 1.01
LMNA-201ENST00000347559 ARAP1Q96P48 1450 aa21.35■■□□□ 1.01
LMNA-201ENST00000347559 CUX2O14529 1486 aa21.32■■□□□ 1
LMNA-201ENST00000347559 FAM50AQ14320 339 aaKnown RBP21.28■■□□□ 1
LMNA-201ENST00000347559 B4GALNT3Q6L9W6 998 aa21.27■■□□□ 1
LMNA-201ENST00000347559 PPP4R2Q9NY27 417 aa21.25■□□□□ 0.99
LMNA-201ENST00000347559 NOP58Q9Y2X3 529 aaKnown RBP21.24■□□□□ 0.99
LMNA-201ENST00000347559 SETD5Q9C0A6 1442 aa21.24■□□□□ 0.99
LMNA-201ENST00000347559 PAK3O75914 559 aaPredicted RBP21.23■□□□□ 0.99
LMNA-201ENST00000347559 SALL2Q9Y467 1007 aaPredicted RBP21.18■□□□□ 0.98
LMNA-201ENST00000347559 RTL5Q5HYW3 569 aaPredicted RBP21.13■□□□□ 0.97
LMNA-201ENST00000347559 RTN4Q9NQC3 1192 aaKnown RBP21.13■□□□□ 0.97
LMNA-201ENST00000347559 PABPN1Q86U42 306 aaKnown RBP eCLIP21.13■□□□□ 0.971e-8■□□□□ 9.4
LMNA-201ENST00000347559 CCDC136Q96JN2 1154 aa21.13■□□□□ 0.97
LMNA-201ENST00000347559 TIMELESSQ9UNS1 1208 aa21.11■□□□□ 0.97
LMNA-201ENST00000347559 TONSLQ96HA7 1378 aa21.1■□□□□ 0.97
LMNA-201ENST00000347559 ATP1B4Q9UN42 357 aaPredicted RBP21.1■□□□□ 0.97
LMNA-201ENST00000347559 PRXQ9BXM0 1461 aa21.09■□□□□ 0.97
LMNA-201ENST00000347559 ERICH6BQ5W0A0 696 aa21.09■□□□□ 0.97
LMNA-201ENST00000347559 FAM9BQ8IZU0 186 aa21.08■□□□□ 0.97
LMNA-201ENST00000347559 IL27Q8NEV9 243 aa21.07■□□□□ 0.96
LMNA-201ENST00000347559 CCDC184Q52MB2 194 aa21.05■□□□□ 0.96
LMNA-201ENST00000347559 ERICH3Q5RHP9 1530 aa21.05■□□□□ 0.96
LMNA-201ENST00000347559 ARHGAP35Q9NRY4 1499 aa21.03■□□□□ 0.96
LMNA-201ENST00000347559 ANP32AP39687 249 aaKnown RBP21.03■□□□□ 0.96
LMNA-201ENST00000347559 PHLDB1Q86UU1 1377 aa21.02■□□□□ 0.96
LMNA-201ENST00000347559 ZBTB47Q9UFB7 747 aaPredicted RBP21■□□□□ 0.95
LMNA-201ENST00000347559 ZBTB4Q9P1Z0 1013 aaPredicted RBP21■□□□□ 0.95
LMNA-201ENST00000347559 IPO9Q96P70 1041 aaKnown RBP20.96■□□□□ 0.95
LMNA-201ENST00000347559 TOP2BQ02880 1626 aa20.95■□□□□ 0.94
LMNA-201ENST00000347559 MRS2Q9HD23 443 aa20.94■□□□□ 0.94
LMNA-201ENST00000347559 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
LMNA-201ENST00000347559 CNGB1Q14028 1251 aaPredicted RBP20.91■□□□□ 0.94
LMNA-201ENST00000347559 WASHC2AQ641Q2 1341 aa20.91■□□□□ 0.94
LMNA-201ENST00000347559 HSPA5P11021 654 aaKnown RBP20.9■□□□□ 0.94
LMNA-201ENST00000347559 NPM2Q86SE8 214 aaKnown RBP20.9■□□□□ 0.94
LMNA-201ENST00000347559 TIAM1Q13009 1591 aa20.89■□□□□ 0.93
LMNA-201ENST00000347559 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
LMNA-201ENST00000347559 SENP3-EIF4A1A0A087X0R7 540 aa20.88■□□□□ 0.93
LMNA-201ENST00000347559 LRRC9Q6ZRR7 1453 aa20.88■□□□□ 0.93
LMNA-201ENST00000347559 LAS1LQ9Y4W2 734 aaKnown RBP20.85■□□□□ 0.93
LMNA-201ENST00000347559 ZBED9Q6R2W3 1325 aa20.84■□□□□ 0.93
LMNA-201ENST00000347559 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
LMNA-201ENST00000347559 PRKRIP1Q9H875 184 aaPredicted RBP20.81■□□□□ 0.92
LMNA-201ENST00000347559 NEFMP07197 916 aa20.8■□□□□ 0.92
LMNA-201ENST00000347559 AKNAQ7Z591 1439 aa20.79■□□□□ 0.92
LMNA-201ENST00000347559 ATAD2BQ9ULI0 1458 aa20.78■□□□□ 0.92
LMNA-201ENST00000347559 EIF4G2P78344 907 aaKnown RBP eCLIP20.78■□□□□ 0.92
LMNA-201ENST00000347559 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
LMNA-201ENST00000347559 BIVM-ERCC5R4GMW8 1640 aa20.76■□□□□ 0.91
LMNA-201ENST00000347559 PEG3Q9GZU2 1588 aa20.76■□□□□ 0.91
LMNA-201ENST00000347559 C11orf95C9JLR9 678 aaPredicted RBP20.73■□□□□ 0.91
LMNA-201ENST00000347559 CCDC18Q5T9S5 1454 aa20.73■□□□□ 0.91
LMNA-201ENST00000347559 CNTLNQ9NXG0 1405 aa20.73■□□□□ 0.91
LMNA-201ENST00000347559 EIF5BO60841 1220 aaKnown RBP20.72■□□□□ 0.91
LMNA-201ENST00000347559 MAP3K1Q13233 1512 aa20.71■□□□□ 0.91
LMNA-201ENST00000347559 CUX1P39880 1505 aa20.69■□□□□ 0.9
LMNA-201ENST00000347559 UACAQ9BZF9 1416 aa20.67■□□□□ 0.9
LMNA-201ENST00000347559 POLR3GLQ9BT43 218 aa20.66■□□□□ 0.9
LMNA-201ENST00000347559 BRPF3Q9ULD4 1205 aa20.66■□□□□ 0.9
LMNA-201ENST00000347559 NUDCQ9Y266 331 aa20.66■□□□□ 0.9
LMNA-201ENST00000347559 CCDC7Q96M83 1385 aa20.62■□□□□ 0.89
LMNA-201ENST00000347559 AQRO60306 1485 aaKnown RBP eCLIP20.62■□□□□ 0.891e-7■■■■■ 36.5
LMNA-201ENST00000347559 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
LMNA-201ENST00000347559 IGF1RP08069 1367 aa20.61■□□□□ 0.89
LMNA-201ENST00000347559 UBE2Q2Q8WVN8 375 aa20.6■□□□□ 0.89
LMNA-201ENST00000347559 CHIC2Q9UKJ5 165 aa20.6■□□□□ 0.89
LMNA-201ENST00000347559 PTPRKQ15262 1439 aa20.6■□□□□ 0.89
LMNA-201ENST00000347559 SMG6Q86US8 1419 aaKnown RBP20.6■□□□□ 0.89
LMNA-201ENST00000347559 NCOA2Q15596 1464 aa20.59■□□□□ 0.89
LMNA-201ENST00000347559 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
LMNA-201ENST00000347559 PCF11O94913 1555 aaKnown RBP20.59■□□□□ 0.89
LMNA-201ENST00000347559 KDM5BQ9UGL1 1544 aa20.58■□□□□ 0.89
LMNA-201ENST00000347559 USP35Q9P2H5 1018 aa20.58■□□□□ 0.88
LMNA-201ENST00000347559 FHOD3Q2V2M9 1422 aa20.58■□□□□ 0.88
LMNA-201ENST00000347559 FGD6Q6ZV73 1430 aa20.58■□□□□ 0.88
LMNA-201ENST00000347559 L3MBTL2Q969R5 705 aa20.58■□□□□ 0.88
LMNA-201ENST00000347559 BICRAQ9NZM4 1560 aa20.56■□□□□ 0.88
LMNA-201ENST00000347559 HFM1A2PYH4 1435 aa20.56■□□□□ 0.88
LMNA-201ENST00000347559 PDE4AP27815 886 aa20.56■□□□□ 0.88
LMNA-201ENST00000347559 FOXD1Q16676 465 aa20.56■□□□□ 0.88
LMNA-201ENST00000347559 PPM1GO15355 546 aaPredicted RBP20.55■□□□□ 0.88
LMNA-201ENST00000347559 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.53■□□□□ 0.88
LMNA-201ENST00000347559 WASHC2CQ9Y4E1 1318 aa20.53■□□□□ 0.88
LMNA-201ENST00000347559 NAIPQ13075 1403 aa20.53■□□□□ 0.88
LMNA-201ENST00000347559 KIF7Q2M1P5 1343 aa20.53■□□□□ 0.88
LMNA-201ENST00000347559 MTUS2Q5JR59 1369 aa20.52■□□□□ 0.88
LMNA-201ENST00000347559 EXOC6Q8TAG9 804 aa20.52■□□□□ 0.88
LMNA-201ENST00000347559 RNF123Q5XPI4 1314 aa20.52■□□□□ 0.88
LMNA-201ENST00000347559 NCOA1Q15788 1441 aa20.52■□□□□ 0.87
LMNA-201ENST00000347559 PTPN23Q9H3S7 1636 aa20.51■□□□□ 0.87
LMNA-201ENST00000347559 CFAP43Q8NDM7 1665 aa20.51■□□□□ 0.87
LMNA-201ENST00000347559 FMN1Q68DA7 1419 aa20.51■□□□□ 0.87
LMNA-201ENST00000347559 TCERG1O14776 1098 aaKnown RBP20.5■□□□□ 0.87
LMNA-201ENST00000347559 GSE1Q14687 1217 aa20.49■□□□□ 0.87
LMNA-201ENST00000347559 NCAPD3P42695 1498 aa20.49■□□□□ 0.87
LMNA-201ENST00000347559 NBPF8Q3BBV2 869 aa20.47■□□□□ 0.87
LMNA-201ENST00000347559 BACH2Q9BYV9 841 aa20.47■□□□□ 0.87
LMNA-201ENST00000347559 SLC4A3P48751 1232 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms