RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 KIF27Q86VH2 1401 aa25.05■■□□□ 1.6
HMGN3-202ENST00000344726 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
HMGN3-202ENST00000344726 CUL7Q14999 1698 aa25■■□□□ 1.59
HMGN3-202ENST00000344726 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.58
HMGN3-202ENST00000344726 TRHP20396 242 aaPredicted RBP24.94■■□□□ 1.58
HMGN3-202ENST00000344726 JPH4Q96JJ6 628 aa24.91■■□□□ 1.58
HMGN3-202ENST00000344726 KIAA0586Q9BVV6 1533 aa24.86■■□□□ 1.57
HMGN3-202ENST00000344726 CARMIL1Q5VZK9 1371 aa24.86■■□□□ 1.57
HMGN3-202ENST00000344726 ADCY10Q96PN6 1610 aa24.69■■□□□ 1.54
HMGN3-202ENST00000344726 IQGAP2Q13576 1575 aa24.68■■□□□ 1.54
HMGN3-202ENST00000344726 RAPGEF2Q9Y4G8 1499 aa24.68■■□□□ 1.54
HMGN3-202ENST00000344726 KIF13AQ9H1H9 1805 aa24.63■■□□□ 1.53
HMGN3-202ENST00000344726 DISP1Q96F81 1524 aa24.59■■□□□ 1.53
HMGN3-202ENST00000344726 MAPKBP1O60336 1514 aa24.56■■□□□ 1.52
HMGN3-202ENST00000344726 PTPRGP23470 1445 aa24.55■■□□□ 1.52
HMGN3-202ENST00000344726 UGGT2Q9NYU1 1516 aa24.55■■□□□ 1.52
HMGN3-202ENST00000344726 TNIKQ9UKE5 1360 aa24.54■■□□□ 1.52
HMGN3-202ENST00000344726 CARMIL2Q6F5E8 1435 aa24.54■■□□□ 1.52
HMGN3-202ENST00000344726 PRXQ9BXM0 1461 aa24.54■■□□□ 1.52
HMGN3-202ENST00000344726 CTTNBP2Q8WZ74 1663 aa24.52■■□□□ 1.52
HMGN3-202ENST00000344726 TTBK1Q5TCY1 1321 aaPredicted RBP24.51■■□□□ 1.51
HMGN3-202ENST00000344726 ABCC10Q5T3U5 1492 aa24.5■■□□□ 1.51
HMGN3-202ENST00000344726 DIP2BQ9P265 1576 aa24.5■■□□□ 1.51
HMGN3-202ENST00000344726 KIAA0556O60303 1618 aa24.5■■□□□ 1.51
HMGN3-202ENST00000344726 NPM1P06748 294 aaKnown RBP eCLIP24.46■■□□□ 1.51
HMGN3-202ENST00000344726 ABCC2Q92887 1545 aa24.43■■□□□ 1.5
HMGN3-202ENST00000344726 UHRF1BP1LA0JNW5 1464 aa24.42■■□□□ 1.5
HMGN3-202ENST00000344726 FAM69CQ0P6D2 419 aa24.41■■□□□ 1.5
HMGN3-202ENST00000344726 UACAQ9BZF9 1416 aa24.4■■□□□ 1.5
HMGN3-202ENST00000344726 CSRNP3Q8WYN3 585 aa24.33■■□□□ 1.49
HMGN3-202ENST00000344726 ASXL2Q76L83 1435 aa24.33■■□□□ 1.49
HMGN3-202ENST00000344726 KDM5BQ9UGL1 1544 aa24.32■■□□□ 1.48
HMGN3-202ENST00000344726 ZCCHC11Q5TAX3 1644 aaKnown RBP24.3■■□□□ 1.48
HMGN3-202ENST00000344726 GOLGA3Q08378 1498 aa24.3■■□□□ 1.48
HMGN3-202ENST00000344726 PLB1Q6P1J6 1458 aa24.29■■□□□ 1.48
HMGN3-202ENST00000344726 TSPOAP1O95153 1857 aa24.28■■□□□ 1.48
HMGN3-202ENST00000344726 EEA1Q15075 1411 aa24.27■■□□□ 1.48
HMGN3-202ENST00000344726 ABCA8O94911 1581 aa24.25■■□□□ 1.47
HMGN3-202ENST00000344726 GLI2P10070 1586 aa24.24■■□□□ 1.47
HMGN3-202ENST00000344726 PPRC1Q5VV67 1664 aaKnown RBP24.22■■□□□ 1.47
HMGN3-202ENST00000344726 FAM9AQ8IZU1 332 aaPredicted RBP24.21■■□□□ 1.47
HMGN3-202ENST00000344726 SAMD9Q5K651 1589 aa24.2■■□□□ 1.47
HMGN3-202ENST00000344726 EPRSP07814 1512 aaKnown RBP24.2■■□□□ 1.46
HMGN3-202ENST00000344726 KDM6BO15054 1643 aa24.17■■□□□ 1.46
HMGN3-202ENST00000344726 P3H3Q8IVL6 736 aa24.15■■□□□ 1.46
HMGN3-202ENST00000344726 KIF21BO75037 1637 aa24.14■■□□□ 1.46
HMGN3-202ENST00000344726 MAP3K4Q9Y6R4 1608 aa24.14■■□□□ 1.46
HMGN3-202ENST00000344726 WDR7Q9Y4E6 1490 aa24.13■■□□□ 1.45
HMGN3-202ENST00000344726 RANGAP1P46060 587 aaPredicted RBP24.03■■□□□ 1.44
HMGN3-202ENST00000344726 RAPGEF6Q8TEU7 1601 aa24.02■■□□□ 1.44
HMGN3-202ENST00000344726 FHOD3Q2V2M9 1422 aa24.02■■□□□ 1.44
HMGN3-202ENST00000344726 ATP10BO94823 1461 aa24.02■■□□□ 1.44
HMGN3-202ENST00000344726 COL17A1Q9UMD9 1497 aaPredicted RBP24.02■■□□□ 1.44
HMGN3-202ENST00000344726 ARID3CA6NKF2 412 aa24.02■■□□□ 1.44
HMGN3-202ENST00000344726 CFAP43Q8NDM7 1665 aa23.97■■□□□ 1.43
HMGN3-202ENST00000344726 TEX14Q8IWB6 1497 aa23.96■■□□□ 1.43
HMGN3-202ENST00000344726 NUP153P49790 1475 aaKnown RBP23.95■■□□□ 1.42
HMGN3-202ENST00000344726 EHMT2Q96KQ7 1210 aa23.95■■□□□ 1.42
HMGN3-202ENST00000344726 KCNH8Q96L42 1107 aa23.95■■□□□ 1.42
HMGN3-202ENST00000344726 EFCAB5A4FU69 1503 aa23.94■■□□□ 1.42
HMGN3-202ENST00000344726 MAGI3Q5TCQ9 1506 aa23.92■■□□□ 1.42
HMGN3-202ENST00000344726 CD109Q6YHK3 1445 aa23.92■■□□□ 1.42
HMGN3-202ENST00000344726 ABCA9Q8IUA7 1624 aa23.86■■□□□ 1.41
HMGN3-202ENST00000344726 UBTFP17480 764 aaKnown RBP23.85■■□□□ 1.41
HMGN3-202ENST00000344726 ARHGAP35Q9NRY4 1499 aa23.82■■□□□ 1.4
HMGN3-202ENST00000344726 KDM4FA0A1W2PPD8 638 aa23.82■■□□□ 1.4
HMGN3-202ENST00000344726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.78■■□□□ 1.4
HMGN3-202ENST00000344726 HNRNPUL2Q1KMD3 747 aaKnown RBP23.78■■□□□ 1.4
HMGN3-202ENST00000344726 CDK13Q14004 1512 aaKnown RBP23.76■■□□□ 1.39
HMGN3-202ENST00000344726 ARAP3Q8WWN8 1544 aa23.73■■□□□ 1.39
HMGN3-202ENST00000344726 ADGRL1O94910 1474 aa23.7■■□□□ 1.38
HMGN3-202ENST00000344726 FMN1Q68DA7 1419 aa23.69■■□□□ 1.38
HMGN3-202ENST00000344726 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.69■■□□□ 1.38
HMGN3-202ENST00000344726 FOXD1Q16676 465 aa23.68■■□□□ 1.38
HMGN3-202ENST00000344726 HECW1Q76N89 1606 aa23.68■■□□□ 1.38
HMGN3-202ENST00000344726 TTC37Q6PGP7 1564 aa23.68■■□□□ 1.38
HMGN3-202ENST00000344726 PLEKHD1A6NEE1 506 aa23.66■■□□□ 1.38
HMGN3-202ENST00000344726 LRRIQ1Q96JM4 1722 aa23.66■■□□□ 1.38
HMGN3-202ENST00000344726 NEO1Q92859 1461 aa23.65■■□□□ 1.38
HMGN3-202ENST00000344726 FRMPD1Q5SYB0 1578 aa23.65■■□□□ 1.38
HMGN3-202ENST00000344726 PLPPR3Q6T4P5 718 aa23.63■■□□□ 1.37
HMGN3-202ENST00000344726 PHLDB1Q86UU1 1377 aa23.61■■□□□ 1.37
HMGN3-202ENST00000344726 PCF11O94913 1555 aaKnown RBP23.58■■□□□ 1.37
HMGN3-202ENST00000344726 RAPGEF3O95398 923 aa23.58■■□□□ 1.37
HMGN3-202ENST00000344726 ATP1B4Q9UN42 357 aaPredicted RBP23.58■■□□□ 1.37
HMGN3-202ENST00000344726 FANCAO15360 1455 aa23.56■■□□□ 1.36
HMGN3-202ENST00000344726 KIF14Q15058 1648 aa23.55■■□□□ 1.36
HMGN3-202ENST00000344726 RICTORQ6R327 1708 aa23.53■■□□□ 1.36
HMGN3-202ENST00000344726 AKNAQ7Z591 1439 aa23.53■■□□□ 1.36
HMGN3-202ENST00000344726 CFAP74Q9C0B2 1584 aa23.52■■□□□ 1.36
HMGN3-202ENST00000344726 CASKIN1Q8WXD9 1431 aa23.51■■□□□ 1.35
HMGN3-202ENST00000344726 PLCH2O75038 1416 aa23.49■■□□□ 1.35
HMGN3-202ENST00000344726 CLIP1P30622 1438 aa23.49■■□□□ 1.35
HMGN3-202ENST00000344726 TROQ12816 1431 aaPredicted RBP23.49■■□□□ 1.35
HMGN3-202ENST00000344726 DENND4BO75064 1496 aaPredicted RBP23.48■■□□□ 1.35
HMGN3-202ENST00000344726 MYO5CQ9NQX4 1742 aa23.47■■□□□ 1.35
HMGN3-202ENST00000344726 ARHGEF40Q8TER5 1519 aa23.44■■□□□ 1.34
HMGN3-202ENST00000344726 FYCO1Q9BQS8 1478 aa23.43■■□□□ 1.34
HMGN3-202ENST00000344726 CDK11AQ9UQ88 783 aaPredicted RBP23.43■■□□□ 1.34
HMGN3-202ENST00000344726 ZMYM4Q5VZL5 1548 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms