RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 PLEKHG5O94827 1062 aa22.84■■□□□ 1.25
SMARCA4-201ENST00000344626 DIEXFQ68CQ4 756 aaKnown RBP22.79■■□□□ 1.24
SMARCA4-201ENST00000344626 ANP32CO43423 234 aa22.78■■□□□ 1.24
SMARCA4-201ENST00000344626 KDM2AQ9Y2K7 1162 aa22.78■■□□□ 1.24
SMARCA4-201ENST00000344626 CARMIL2Q6F5E8 1435 aa22.77■■□□□ 1.24
SMARCA4-201ENST00000344626 NEFMP07197 916 aa22.76■■□□□ 1.23
SMARCA4-201ENST00000344626 TONSLQ96HA7 1378 aa22.75■■□□□ 1.23
SMARCA4-201ENST00000344626 TOP2AP11388 1531 aaKnown RBP22.74■■□□□ 1.23
SMARCA4-201ENST00000344626 ACIN1Q9UKV3 1341 aaKnown RBP22.73■■□□□ 1.23
SMARCA4-201ENST00000344626 FANCD2Q9BXW9 1451 aa22.73■■□□□ 1.23
SMARCA4-201ENST00000344626 JPH4Q96JJ6 628 aa22.73■■□□□ 1.23
SMARCA4-201ENST00000344626 CEP162Q5TB80 1403 aa22.71■■□□□ 1.23
SMARCA4-201ENST00000344626 TNIKQ9UKE5 1360 aa22.71■■□□□ 1.23
SMARCA4-201ENST00000344626 WIZO95785 1651 aa22.67■■□□□ 1.22
SMARCA4-201ENST00000344626 RGL3Q3MIN7 710 aa22.65■■□□□ 1.22
SMARCA4-201ENST00000344626 A0A0G2JS52 829 aa22.64■■□□□ 1.22
SMARCA4-201ENST00000344626 SMARCA4P51532 1647 aa22.63■■□□□ 1.21
SMARCA4-201ENST00000344626 GGT6Q6P531 493 aa22.62■■□□□ 1.21
SMARCA4-201ENST00000344626 DAXXQ9UER7 740 aaPredicted RBP22.6■■□□□ 1.21
SMARCA4-201ENST00000344626 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
SMARCA4-201ENST00000344626 CCNB3Q8WWL7 1395 aa22.58■■□□□ 1.21
SMARCA4-201ENST00000344626 ZNF316A6NFI3 1004 aaPredicted RBP22.58■■□□□ 1.21
SMARCA4-201ENST00000344626 HAP1P54257 671 aaPredicted RBP22.58■■□□□ 1.21
SMARCA4-201ENST00000344626 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
SMARCA4-201ENST00000344626 ZBTB7CA1YPR0 619 aa22.56■■□□□ 1.2
SMARCA4-201ENST00000344626 AEBP2Q6ZN18 517 aaPredicted RBP22.54■■□□□ 1.2
SMARCA4-201ENST00000344626 NCAPD3P42695 1498 aa22.53■■□□□ 1.2
SMARCA4-201ENST00000344626 EFCAB2Q5VUJ9 269 aa22.52■■□□□ 1.2
SMARCA4-201ENST00000344626 LMOD2Q6P5Q4 547 aa22.47■■□□□ 1.19
SMARCA4-201ENST00000344626 CLSPNQ9HAW4 1339 aa22.45■■□□□ 1.18
SMARCA4-201ENST00000344626 CC2D2AQ9P2K1 1620 aa22.43■■□□□ 1.18
SMARCA4-201ENST00000344626 ZBTB47Q9UFB7 747 aaPredicted RBP22.42■■□□□ 1.18
SMARCA4-201ENST00000344626 BCL11AQ9H165 835 aa22.41■■□□□ 1.18
SMARCA4-201ENST00000344626 FAM69CQ0P6D2 419 aa22.41■■□□□ 1.18
SMARCA4-201ENST00000344626 NESP48681 1621 aa22.4■■□□□ 1.18
SMARCA4-201ENST00000344626 PTPRGP23470 1445 aa22.39■■□□□ 1.18
SMARCA4-201ENST00000344626 AQRO60306 1485 aaKnown RBP eCLIP22.36■■□□□ 1.172e-7■■■■□ 24.9
SMARCA4-201ENST00000344626 CANXP27824 592 aaKnown RBP22.35■■□□□ 1.17
SMARCA4-201ENST00000344626 TMC1Q8TDI8 760 aa22.35■■□□□ 1.17
SMARCA4-201ENST00000344626 HDGFP51858 240 aaKnown RBP22.32■■□□□ 1.16
SMARCA4-201ENST00000344626 RAD54L2Q9Y4B4 1467 aa22.32■■□□□ 1.16
SMARCA4-201ENST00000344626 POGKQ9P215 609 aa22.32■■□□□ 1.16
SMARCA4-201ENST00000344626 KANK1Q14678 1352 aa22.31■■□□□ 1.16
SMARCA4-201ENST00000344626 FMN1Q68DA7 1419 aa22.29■■□□□ 1.16
SMARCA4-201ENST00000344626 KIF3BO15066 747 aa22.28■■□□□ 1.16
SMARCA4-201ENST00000344626 GAPVD1Q14C86 1478 aa22.27■■□□□ 1.16
SMARCA4-201ENST00000344626 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
SMARCA4-201ENST00000344626 MYT1Q01538 1121 aa22.27■■□□□ 1.16
SMARCA4-201ENST00000344626 FGD5Q6ZNL6 1462 aa22.25■■□□□ 1.15
SMARCA4-201ENST00000344626 HNRNPMP52272 730 aaKnown RBP eCLIP22.24■■□□□ 1.155e-6■■□□□ 11.8
SMARCA4-201ENST00000344626 NPM2Q86SE8 214 aaKnown RBP22.21■■□□□ 1.15
SMARCA4-201ENST00000344626 SPAG9O60271 1321 aaKnown RBP22.21■■□□□ 1.15
SMARCA4-201ENST00000344626 FHOD3Q2V2M9 1422 aa22.21■■□□□ 1.15
SMARCA4-201ENST00000344626 EIF4G2P78344 907 aaKnown RBP eCLIP22.18■■□□□ 1.14
SMARCA4-201ENST00000344626 HIRIP3Q9BW71 556 aaPredicted RBP22.16■■□□□ 1.14
SMARCA4-201ENST00000344626 WASHC2CQ9Y4E1 1318 aa22.15■■□□□ 1.14
SMARCA4-201ENST00000344626 VPS8Q8N3P4 1428 aa22.15■■□□□ 1.14
SMARCA4-201ENST00000344626 CDCA8Q53HL2 280 aa22.15■■□□□ 1.14
SMARCA4-201ENST00000344626 MRC2Q9UBG0 1479 aa22.14■■□□□ 1.14
SMARCA4-201ENST00000344626 ARHGAP35Q9NRY4 1499 aa22.13■■□□□ 1.13
SMARCA4-201ENST00000344626 SAFB2Q14151 953 aaKnown RBP eCLIP22.13■■□□□ 1.132e-6■□□□□ 10.3
SMARCA4-201ENST00000344626 PPM1GO15355 546 aaPredicted RBP22.12■■□□□ 1.13
SMARCA4-201ENST00000344626 DDX10Q13206 875 aaKnown RBP22.12■■□□□ 1.13
SMARCA4-201ENST00000344626 KANK4Q5T7N3 995 aaPredicted RBP22.1■■□□□ 1.13
SMARCA4-201ENST00000344626 SALL2Q9Y467 1007 aaPredicted RBP22.1■■□□□ 1.13
SMARCA4-201ENST00000344626 STK26Q9P289 416 aa22.1■■□□□ 1.13
SMARCA4-201ENST00000344626 WDR43Q15061 677 aaKnown RBP eCLIP22.08■■□□□ 1.13
SMARCA4-201ENST00000344626 EID1Q9Y6B2 187 aa22.07■■□□□ 1.12
SMARCA4-201ENST00000344626 CARD11Q9BXL7 1154 aa22.07■■□□□ 1.12
SMARCA4-201ENST00000344626 IGF1RP08069 1367 aa22.06■■□□□ 1.12
SMARCA4-201ENST00000344626 DCAF11Q8TEB1 546 aa22.05■■□□□ 1.12
SMARCA4-201ENST00000344626 CFTRP13569 1480 aa22.03■■□□□ 1.12
SMARCA4-201ENST00000344626 SOX12O15370 315 aa22.03■■□□□ 1.12
SMARCA4-201ENST00000344626 GRIN2BQ13224 1484 aa22.02■■□□□ 1.12
SMARCA4-201ENST00000344626 PKD2Q13563 968 aa22.02■■□□□ 1.11
SMARCA4-201ENST00000344626 RSPH4AQ5TD94 716 aa22.02■■□□□ 1.11
SMARCA4-201ENST00000344626 NUTM2DQ5VT03 806 aaPredicted RBP21.99■■□□□ 1.11
SMARCA4-201ENST00000344626 ARXQ96QS3 562 aa21.99■■□□□ 1.11
SMARCA4-201ENST00000344626 CCDC18Q5T9S5 1454 aa21.98■■□□□ 1.11
SMARCA4-201ENST00000344626 FAM9BQ8IZU0 186 aa21.98■■□□□ 1.11
SMARCA4-201ENST00000344626 SRPK2P78362 688 aaKnown RBP21.97■■□□□ 1.11
SMARCA4-201ENST00000344626 NUP155O75694 1391 aa21.97■■□□□ 1.11
SMARCA4-201ENST00000344626 IFT140Q96RY7 1462 aa21.96■■□□□ 1.11
SMARCA4-201ENST00000344626 RUSC2Q8N2Y8 1516 aa21.96■■□□□ 1.11
SMARCA4-201ENST00000344626 BICRAQ9NZM4 1560 aa21.95■■□□□ 1.11
SMARCA4-201ENST00000344626 ANKRD30AQ9BXX3 1397 aa21.95■■□□□ 1.1
SMARCA4-201ENST00000344626 FOXD1Q16676 465 aa21.95■■□□□ 1.1
SMARCA4-201ENST00000344626 SIN3AQ96ST3 1273 aa21.95■■□□□ 1.1
SMARCA4-201ENST00000344626 HMGXB3Q12766 1538 aa21.94■■□□□ 1.1
SMARCA4-201ENST00000344626 PRG4Q92954 1404 aaPredicted RBP21.94■■□□□ 1.1
SMARCA4-201ENST00000344626 PAK3O75914 559 aaPredicted RBP21.91■■□□□ 1.1
SMARCA4-201ENST00000344626 HNRNPUQ00839 825 aaKnown RBP eCLIP21.91■■□□□ 1.1
SMARCA4-201ENST00000344626 CFAP53Q96M91 514 aa21.91■■□□□ 1.1
SMARCA4-201ENST00000344626 MRS2Q9HD23 443 aa21.9■■□□□ 1.1
SMARCA4-201ENST00000344626 KNSTRNQ9Y448 316 aa21.9■■□□□ 1.1
SMARCA4-201ENST00000344626 TNNT2P45379 298 aaPredicted RBP21.88■■□□□ 1.09
SMARCA4-201ENST00000344626 SETD5Q9C0A6 1442 aa21.87■■□□□ 1.09
SMARCA4-201ENST00000344626 CCDC9Q9Y3X0 531 aaKnown RBP21.86■■□□□ 1.09
SMARCA4-201ENST00000344626 TOPBP1Q92547 1522 aa21.86■■□□□ 1.09
SMARCA4-201ENST00000344626 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms