RNA–Protein interactions for RNA: ENST00000343483.6

HOXA9-201, Transcript of homeobox A9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA9, Length 2,060 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-201ENST00000343483 ZEB1P37275 1124 aaPredicted RBP28.53■■■□□ 2.16
HOXA9-201ENST00000343483 SNAPC4Q5SXM2 1469 aa28.38■■■□□ 2.13
HOXA9-201ENST00000343483 FBLN2P98095 1184 aa28.37■■■□□ 2.13
HOXA9-201ENST00000343483 PBRM1Q86U86 1689 aa28.37■■■□□ 2.13
HOXA9-201ENST00000343483 DNAJC5Q9H3Z4 198 aa28.36■■■□□ 2.13
HOXA9-201ENST00000343483 GRIN2BQ13224 1484 aa28.36■■■□□ 2.13
HOXA9-201ENST00000343483 CTTNBP2Q8WZ74 1663 aa28.35■■■□□ 2.13
HOXA9-201ENST00000343483 P3H3Q8IVL6 736 aa28.33■■■□□ 2.13
HOXA9-201ENST00000343483 KANK4Q5T7N3 995 aaPredicted RBP28.32■■■□□ 2.12
HOXA9-201ENST00000343483 CHD1O14646 1710 aa28.3■■■□□ 2.12
HOXA9-201ENST00000343483 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.29■■■□□ 2.12
HOXA9-201ENST00000343483 EFCAB5A4FU69 1503 aa28.28■■■□□ 2.12
HOXA9-201ENST00000343483 OSCARQ8IYS5 282 aa28.27■■■□□ 2.12
HOXA9-201ENST00000343483 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.11
HOXA9-201ENST00000343483 FHOD3Q2V2M9 1422 aa28.26■■■□□ 2.11
HOXA9-201ENST00000343483 MAGI1Q96QZ7 1491 aaPredicted RBP28.24■■■□□ 2.11
HOXA9-201ENST00000343483 CCER1Q8TC90 406 aaPredicted RBP28.22■■■□□ 2.11
HOXA9-201ENST00000343483 CHMP7Q8WUX9 453 aaPredicted RBP28.22■■■□□ 2.11
HOXA9-201ENST00000343483 ADAMTS12P58397 1594 aa28.21■■■□□ 2.11
HOXA9-201ENST00000343483 HNRNPUL2Q1KMD3 747 aaKnown RBP28.19■■■□□ 2.1
HOXA9-201ENST00000343483 PCF11O94913 1555 aaKnown RBP28.16■■■□□ 2.1
HOXA9-201ENST00000343483 SYNJ2O15056 1496 aa28.16■■■□□ 2.1
HOXA9-201ENST00000343483 TIAM1Q13009 1591 aa28.15■■■□□ 2.1
HOXA9-201ENST00000343483 MAP3K1Q13233 1512 aa28.14■■■□□ 2.09
HOXA9-201ENST00000343483 ATP1B4Q9UN42 357 aaPredicted RBP28.14■■■□□ 2.09
HOXA9-201ENST00000343483 SAMD9Q5K651 1589 aa28.1■■■□□ 2.09
HOXA9-201ENST00000343483 FMN1Q68DA7 1419 aa28.08■■■□□ 2.09
HOXA9-201ENST00000343483 FYCO1Q9BQS8 1478 aa28.08■■■□□ 2.09
HOXA9-201ENST00000343483 CASKIN1Q8WXD9 1431 aa28.07■■■□□ 2.08
HOXA9-201ENST00000343483 LRRC9Q6ZRR7 1453 aa28.04■■■□□ 2.08
HOXA9-201ENST00000343483 GRIN2AQ12879 1464 aa28.03■■■□□ 2.08
HOXA9-201ENST00000343483 IQGAP2Q13576 1575 aa28.02■■■□□ 2.08
HOXA9-201ENST00000343483 RRBP1Q9P2E9 1410 aaKnown RBP28.02■■■□□ 2.08
HOXA9-201ENST00000343483 CFAP43Q8NDM7 1665 aa28.01■■■□□ 2.07
HOXA9-201ENST00000343483 CCNB3Q8WWL7 1395 aa27.95■■■□□ 2.07
HOXA9-201ENST00000343483 CEP170Q5SW79 1584 aa27.94■■■□□ 2.06
HOXA9-201ENST00000343483 CLASP1Q7Z460 1538 aa27.92■■■□□ 2.06
HOXA9-201ENST00000343483 KIAA0586Q9BVV6 1533 aa27.88■■■□□ 2.05
HOXA9-201ENST00000343483 NUP160Q12769 1436 aa27.87■■■□□ 2.05
HOXA9-201ENST00000343483 PHLDB1Q86UU1 1377 aa27.87■■■□□ 2.05
HOXA9-201ENST00000343483 UGGT2Q9NYU1 1516 aa27.85■■■□□ 2.05
HOXA9-201ENST00000343483 RIMBP3CA6NJZ7 1639 aa27.82■■■□□ 2.04
HOXA9-201ENST00000343483 RIMBP3BA6NNM3 1639 aa27.82■■■□□ 2.04
HOXA9-201ENST00000343483 RIMBP3Q9UFD9 1639 aa27.82■■■□□ 2.04
HOXA9-201ENST00000343483 ARHGEF11O15085 1522 aa27.82■■■□□ 2.04
HOXA9-201ENST00000343483 ITGAEP38570 1179 aa27.8■■■□□ 2.04
HOXA9-201ENST00000343483 MTUS2Q5JR59 1369 aa27.79■■■□□ 2.04
HOXA9-201ENST00000343483 LRRIQ1Q96JM4 1722 aa27.76■■■□□ 2.03
HOXA9-201ENST00000343483 DISP1Q96F81 1524 aa27.74■■■□□ 2.03
HOXA9-201ENST00000343483 KIAA0556O60303 1618 aa27.73■■■□□ 2.03
HOXA9-201ENST00000343483 FAM50AQ14320 339 aaKnown RBP27.72■■■□□ 2.03
HOXA9-201ENST00000343483 ERCC6L2Q5T890 1561 aa27.72■■■□□ 2.03
HOXA9-201ENST00000343483 HECW1Q76N89 1606 aa27.72■■■□□ 2.03
HOXA9-201ENST00000343483 CCDC18Q5T9S5 1454 aa27.7■■■□□ 2.03
HOXA9-201ENST00000343483 JPH4Q96JJ6 628 aa27.68■■■□□ 2.02
HOXA9-201ENST00000343483 CYB5RLQ6IPT4 315 aa27.66■■■□□ 2.02
HOXA9-201ENST00000343483 EHBP1L1Q8N3D4 1523 aa27.64■■■□□ 2.02
HOXA9-201ENST00000343483 EPRSP07814 1512 aaKnown RBP27.64■■■□□ 2.02
HOXA9-201ENST00000343483 SHROOM2Q13796 1616 aa27.63■■■□□ 2.01
HOXA9-201ENST00000343483 NCOA2Q15596 1464 aa27.61■■■□□ 2.01
HOXA9-201ENST00000343483 ARID3CA6NKF2 412 aa27.61■■■□□ 2.01
HOXA9-201ENST00000343483 FGD6Q6ZV73 1430 aa27.6■■■□□ 2.01
HOXA9-201ENST00000343483 MAGI3Q5TCQ9 1506 aa27.6■■■□□ 2.01
HOXA9-201ENST00000343483 PRG4Q92954 1404 aaPredicted RBP27.59■■■□□ 2.01
HOXA9-201ENST00000343483 CDK13Q14004 1512 aaKnown RBP27.59■■■□□ 2.01
HOXA9-201ENST00000343483 SUPT6HQ7KZ85 1726 aaKnown RBP27.58■■■□□ 2.01
HOXA9-201ENST00000343483 DHX57Q6P158 1386 aaKnown RBP27.58■■■□□ 2.01
HOXA9-201ENST00000343483 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.55■■■□□ 2
HOXA9-201ENST00000343483 CARMIL2Q6F5E8 1435 aa27.54■■■□□ 2
HOXA9-201ENST00000343483 MYOM3Q5VTT5 1437 aa27.53■■■□□ 2
HOXA9-201ENST00000343483 RAB3GAP2Q9H2M9 1393 aa27.52■■■□□ 2
HOXA9-201ENST00000343483 RAPGEF6Q8TEU7 1601 aa27.51■■□□□ 1.99
HOXA9-201ENST00000343483 NUP153P49790 1475 aaKnown RBP27.5■■□□□ 1.99
HOXA9-201ENST00000343483 SETD5Q9C0A6 1442 aa27.49■■□□□ 1.99
HOXA9-201ENST00000343483 CLSPNQ9HAW4 1339 aa27.48■■□□□ 1.99
HOXA9-201ENST00000343483 PLB1Q6P1J6 1458 aa27.44■■□□□ 1.98
HOXA9-201ENST00000343483 CDK11AQ9UQ88 783 aaPredicted RBP27.38■■□□□ 1.97
HOXA9-201ENST00000343483 PTPN23Q9H3S7 1636 aa27.38■■□□□ 1.97
HOXA9-201ENST00000343483 PTPRKQ15262 1439 aa27.34■■□□□ 1.97
HOXA9-201ENST00000343483 TCOF1Q13428 1488 aaKnown RBP27.3■■□□□ 1.96
HOXA9-201ENST00000343483 MIA2Q96PC5 1412 aa27.29■■□□□ 1.96
HOXA9-201ENST00000343483 ABCA8O94911 1581 aa27.27■■□□□ 1.96
HOXA9-201ENST00000343483 TROQ12816 1431 aaPredicted RBP27.26■■□□□ 1.95
HOXA9-201ENST00000343483 DIEXFQ68CQ4 756 aaKnown RBP27.26■■□□□ 1.95
HOXA9-201ENST00000343483 HFM1A2PYH4 1435 aa27.25■■□□□ 1.95
HOXA9-201ENST00000343483 PTPRGP23470 1445 aa27.25■■□□□ 1.95
HOXA9-201ENST00000343483 MAPKBP1O60336 1514 aa27.24■■□□□ 1.95
HOXA9-201ENST00000343483 ZNF316A6NFI3 1004 aaPredicted RBP27.23■■□□□ 1.95
HOXA9-201ENST00000343483 NAIPQ13075 1403 aa27.18■■□□□ 1.94
HOXA9-201ENST00000343483 CHIC2Q9UKJ5 165 aa27.18■■□□□ 1.94
HOXA9-201ENST00000343483 ATP10BO94823 1461 aa27.17■■□□□ 1.94
HOXA9-201ENST00000343483 ADCY10Q96PN6 1610 aa27.17■■□□□ 1.94
HOXA9-201ENST00000343483 PLEKHD1A6NEE1 506 aa27.14■■□□□ 1.94
HOXA9-201ENST00000343483 KIF14Q15058 1648 aa27.14■■□□□ 1.93
HOXA9-201ENST00000343483 RRP7BPQ9NSQ0 103 aa27.13■■□□□ 1.93
HOXA9-201ENST00000343483 ZNF644Q9H582 1327 aaPredicted RBP27.12■■□□□ 1.93
HOXA9-201ENST00000343483 CFDP1Q9UEE9 299 aaPredicted RBP27.09■■□□□ 1.93
HOXA9-201ENST00000343483 GPATCH8Q9UKJ3 1502 aaKnown RBP27.07■■□□□ 1.92
HOXA9-201ENST00000343483 DAPK1P53355 1430 aa27.07■■□□□ 1.92
HOXA9-201ENST00000343483 UACAQ9BZF9 1416 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms