RNA–Protein interactions for RNA: ENST00000343257.6

CLCN1-201, Transcript of chloride voltage-gated channel 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN1, Length 3,172 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1-201ENST00000343257 MAPKBP1O60336 1514 aa20.77■□□□□ 0.92
CLCN1-201ENST00000343257 FANCIQ9NVI1 1328 aa20.76■□□□□ 0.91
CLCN1-201ENST00000343257 CCER2I3L3R5 266 aa20.76■□□□□ 0.91
CLCN1-201ENST00000343257 PRKCSHP14314 528 aaPredicted RBP20.74■□□□□ 0.91
CLCN1-201ENST00000343257 B4GALNT3Q6L9W6 998 aa20.7■□□□□ 0.9
CLCN1-201ENST00000343257 SETD5Q9C0A6 1442 aa20.68■□□□□ 0.9
CLCN1-201ENST00000343257 CUX2O14529 1486 aa20.66■□□□□ 0.9
CLCN1-201ENST00000343257 P3H3Q8IVL6 736 aa20.65■□□□□ 0.9
CLCN1-201ENST00000343257 PAK3O75914 559 aaPredicted RBP20.59■□□□□ 0.89
CLCN1-201ENST00000343257 CNGB1Q14028 1251 aaPredicted RBP20.59■□□□□ 0.89
CLCN1-201ENST00000343257 ANO8Q9HCE9 1232 aaPredicted RBP20.59■□□□□ 0.89
CLCN1-201ENST00000343257 FAM9BQ8IZU0 186 aa20.57■□□□□ 0.88
CLCN1-201ENST00000343257 PRXQ9BXM0 1461 aa20.57■□□□□ 0.88
CLCN1-201ENST00000343257 PPP4R2Q9NY27 417 aa20.56■□□□□ 0.88
CLCN1-201ENST00000343257 CCDC184Q52MB2 194 aa20.56■□□□□ 0.88
CLCN1-201ENST00000343257 SENP3-EIF4A1A0A087X0R7 540 aa20.56■□□□□ 0.88
CLCN1-201ENST00000343257 TONSLQ96HA7 1378 aa20.55■□□□□ 0.88
CLCN1-201ENST00000343257 PHLDB1Q86UU1 1377 aa20.55■□□□□ 0.88
CLCN1-201ENST00000343257 ARHGAP35Q9NRY4 1499 aa20.55■□□□□ 0.88
CLCN1-201ENST00000343257 NOP58Q9Y2X3 529 aaKnown RBP20.52■□□□□ 0.88
CLCN1-201ENST00000343257 RTN4Q9NQC3 1192 aaKnown RBP20.49■□□□□ 0.87
CLCN1-201ENST00000343257 ERICH3Q5RHP9 1530 aa20.46■□□□□ 0.87
CLCN1-201ENST00000343257 MYT1LQ9UL68 1186 aa20.44■□□□□ 0.86
CLCN1-201ENST00000343257 TOP2BQ02880 1626 aa20.44■□□□□ 0.86
CLCN1-201ENST00000343257 TIMELESSQ9UNS1 1208 aa20.43■□□□□ 0.86
CLCN1-201ENST00000343257 UNC13AQ9UPW8 1703 aa20.43■□□□□ 0.86
CLCN1-201ENST00000343257 SALL2Q9Y467 1007 aaPredicted RBP20.42■□□□□ 0.86
CLCN1-201ENST00000343257 CCDC136Q96JN2 1154 aa20.42■□□□□ 0.86
CLCN1-201ENST00000343257 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
CLCN1-201ENST00000343257 ATAD2BQ9ULI0 1458 aa20.4■□□□□ 0.86
CLCN1-201ENST00000343257 HSPA5P11021 654 aaKnown RBP20.39■□□□□ 0.85
CLCN1-201ENST00000343257 MRS2Q9HD23 443 aa20.39■□□□□ 0.85
CLCN1-201ENST00000343257 RTL5Q5HYW3 569 aaPredicted RBP20.38■□□□□ 0.85
CLCN1-201ENST00000343257 WASHC2AQ641Q2 1341 aa20.38■□□□□ 0.85
CLCN1-201ENST00000343257 IL27Q8NEV9 243 aa20.37■□□□□ 0.85
CLCN1-201ENST00000343257 LRRC9Q6ZRR7 1453 aa20.36■□□□□ 0.85
CLCN1-201ENST00000343257 NPM2Q86SE8 214 aaKnown RBP20.34■□□□□ 0.85
CLCN1-201ENST00000343257 TIAM1Q13009 1591 aa20.34■□□□□ 0.85
CLCN1-201ENST00000343257 ANP32AP39687 249 aaKnown RBP20.31■□□□□ 0.84
CLCN1-201ENST00000343257 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.31■□□□□ 0.84
CLCN1-201ENST00000343257 ZBTB47Q9UFB7 747 aaPredicted RBP20.31■□□□□ 0.84
CLCN1-201ENST00000343257 ERICH6BQ5W0A0 696 aa20.3■□□□□ 0.84
CLCN1-201ENST00000343257 POLR3GLQ9BT43 218 aa20.28■□□□□ 0.84
CLCN1-201ENST00000343257 C11orf95C9JLR9 678 aaPredicted RBP20.27■□□□□ 0.84
CLCN1-201ENST00000343257 CUX1P39880 1505 aa20.27■□□□□ 0.83
CLCN1-201ENST00000343257 IPO9Q96P70 1041 aaKnown RBP20.26■□□□□ 0.83
CLCN1-201ENST00000343257 CHIC2Q9UKJ5 165 aa20.26■□□□□ 0.83
CLCN1-201ENST00000343257 LAS1LQ9Y4W2 734 aaKnown RBP20.26■□□□□ 0.83
CLCN1-201ENST00000343257 PRKRIP1Q9H875 184 aaPredicted RBP20.24■□□□□ 0.83
CLCN1-201ENST00000343257 PEG3Q9GZU2 1588 aa20.24■□□□□ 0.83
CLCN1-201ENST00000343257 EIF4G2P78344 907 aaKnown RBP eCLIP20.24■□□□□ 0.83
CLCN1-201ENST00000343257 RRP7BPQ9NSQ0 103 aa20.23■□□□□ 0.83
CLCN1-201ENST00000343257 AKNAQ7Z591 1439 aa20.23■□□□□ 0.83
CLCN1-201ENST00000343257 BIVM-ERCC5R4GMW8 1640 aa20.23■□□□□ 0.83
CLCN1-201ENST00000343257 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
CLCN1-201ENST00000343257 FOXD1Q16676 465 aa20.21■□□□□ 0.83
CLCN1-201ENST00000343257 CCDC18Q5T9S5 1454 aa20.2■□□□□ 0.82
CLCN1-201ENST00000343257 IGF1RP08069 1367 aa20.19■□□□□ 0.82
CLCN1-201ENST00000343257 ZBED9Q6R2W3 1325 aa20.19■□□□□ 0.82
CLCN1-201ENST00000343257 FHOD3Q2V2M9 1422 aa20.18■□□□□ 0.82
CLCN1-201ENST00000343257 CARMIL1Q5VZK9 1371 aa20.18■□□□□ 0.82
CLCN1-201ENST00000343257 AQRO60306 1485 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLCN1-201ENST00000343257 FHAD1B1AJZ9 1412 aa20.15■□□□□ 0.82
CLCN1-201ENST00000343257 PTPRKQ15262 1439 aa20.15■□□□□ 0.82
CLCN1-201ENST00000343257 NEFMP07197 916 aa20.12■□□□□ 0.81
CLCN1-201ENST00000343257 CNTLNQ9NXG0 1405 aa20.12■□□□□ 0.81
CLCN1-201ENST00000343257 L3MBTL2Q969R5 705 aa20.11■□□□□ 0.81
CLCN1-201ENST00000343257 UACAQ9BZF9 1416 aa20.1■□□□□ 0.81
CLCN1-201ENST00000343257 PCF11O94913 1555 aaKnown RBP20.1■□□□□ 0.81
CLCN1-201ENST00000343257 MAP3K1Q13233 1512 aa20.08■□□□□ 0.81
CLCN1-201ENST00000343257 MTUS2Q5JR59 1369 aa20.07■□□□□ 0.8
CLCN1-201ENST00000343257 FGD6Q6ZV73 1430 aa20.06■□□□□ 0.8
CLCN1-201ENST00000343257 CCDC7Q96M83 1385 aa20.06■□□□□ 0.8
CLCN1-201ENST00000343257 NUDCQ9Y266 331 aa20.05■□□□□ 0.8
CLCN1-201ENST00000343257 ZNF326Q5BKZ1 582 aaKnown RBP20.02■□□□□ 0.8
CLCN1-201ENST00000343257 NBPF8Q3BBV2 869 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 KDM5BQ9UGL1 1544 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 NAIPQ13075 1403 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 KIF7Q2M1P5 1343 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 ARID3CA6NKF2 412 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 HFM1A2PYH4 1435 aa20.01■□□□□ 0.79
CLCN1-201ENST00000343257 EIF5BO60841 1220 aaKnown RBP20■□□□□ 0.79
CLCN1-201ENST00000343257 SKAP1Q86WV1 359 aa20■□□□□ 0.79
CLCN1-201ENST00000343257 BRPF3Q9ULD4 1205 aa19.99■□□□□ 0.79
CLCN1-201ENST00000343257 EXOC6Q8TAG9 804 aa19.97■□□□□ 0.79
CLCN1-201ENST00000343257 PTPN23Q9H3S7 1636 aa19.97■□□□□ 0.79
CLCN1-201ENST00000343257 FMN1Q68DA7 1419 aa19.96■□□□□ 0.79
CLCN1-201ENST00000343257 MPHOSPH9Q99550 1183 aa19.96■□□□□ 0.79
CLCN1-201ENST00000343257 NCOA2Q15596 1464 aa19.95■□□□□ 0.78
CLCN1-201ENST00000343257 SMG6Q86US8 1419 aaKnown RBP19.95■□□□□ 0.78
CLCN1-201ENST00000343257 PDE4AP27815 886 aa19.94■□□□□ 0.78
CLCN1-201ENST00000343257 SLC4A3P48751 1232 aa19.93■□□□□ 0.78
CLCN1-201ENST00000343257 CFAP43Q8NDM7 1665 aa19.93■□□□□ 0.78
CLCN1-201ENST00000343257 NCOA1Q15788 1441 aa19.93■□□□□ 0.78
CLCN1-201ENST00000343257 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLCN1-201ENST00000343257 TMC1Q8TDI8 760 aa19.91■□□□□ 0.78
CLCN1-201ENST00000343257 CASKIN1Q8WXD9 1431 aa19.88■□□□□ 0.77
CLCN1-201ENST00000343257 FYCO1Q9BQS8 1478 aa19.86■□□□□ 0.77
CLCN1-201ENST00000343257 FGD5Q6ZNL6 1462 aa19.85■□□□□ 0.77
CLCN1-201ENST00000343257 RNF123Q5XPI4 1314 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms