RNA–Protein interactions for RNA: ENST00000340611.8

BRAT1-201, Transcript of BRCA1 associated ATM activator 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BRAT1, Length 2,915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-201ENST00000340611 P3H3Q8IVL6 736 aa23.26■■□□□ 1.31
BRAT1-201ENST00000340611 GRIN2BQ13224 1484 aa23.25■■□□□ 1.31
BRAT1-201ENST00000340611 FBLN2P98095 1184 aa23.24■■□□□ 1.31
BRAT1-201ENST00000340611 SNAPC4Q5SXM2 1469 aa23.23■■□□□ 1.31
BRAT1-201ENST00000340611 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
BRAT1-201ENST00000340611 FHAD1B1AJZ9 1412 aa23.16■■□□□ 1.3
BRAT1-201ENST00000340611 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
BRAT1-201ENST00000340611 ARHGAP35Q9NRY4 1499 aa23.14■■□□□ 1.29
BRAT1-201ENST00000340611 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
BRAT1-201ENST00000340611 CTTNBP2Q8WZ74 1663 aa23.09■■□□□ 1.29
BRAT1-201ENST00000340611 VPS8Q8N3P4 1428 aa23.06■■□□□ 1.28
BRAT1-201ENST00000340611 ZEB1P37275 1124 aaPredicted RBP23.06■■□□□ 1.28
BRAT1-201ENST00000340611 FHOD3Q2V2M9 1422 aa23.03■■□□□ 1.28
BRAT1-201ENST00000340611 NEUROD1Q13562 356 aa23.03■■□□□ 1.28
BRAT1-201ENST00000340611 GTF3C3Q9Y5Q9 886 aa23.02■■□□□ 1.28
BRAT1-201ENST00000340611 GRIN2AQ12879 1464 aa23.01■■□□□ 1.27
BRAT1-201ENST00000340611 ATP1B4Q9UN42 357 aaPredicted RBP23.01■■□□□ 1.27
BRAT1-201ENST00000340611 ACIN1Q9UKV3 1341 aaKnown RBP23■■□□□ 1.27
BRAT1-201ENST00000340611 MAGI1Q96QZ7 1491 aaPredicted RBP23■■□□□ 1.27
BRAT1-201ENST00000340611 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
BRAT1-201ENST00000340611 APLP2Q06481 763 aa22.93■■□□□ 1.26
BRAT1-201ENST00000340611 CEP170Q5SW79 1584 aa22.92■■□□□ 1.26
BRAT1-201ENST00000340611 IQGAP2Q13576 1575 aa22.91■■□□□ 1.26
BRAT1-201ENST00000340611 KANK4Q5T7N3 995 aaPredicted RBP22.89■■□□□ 1.25
BRAT1-201ENST00000340611 CHD1O14646 1710 aa22.86■■□□□ 1.25
BRAT1-201ENST00000340611 ARID3CA6NKF2 412 aa22.85■■□□□ 1.25
BRAT1-201ENST00000340611 KIAA0586Q9BVV6 1533 aa22.84■■□□□ 1.25
BRAT1-201ENST00000340611 SAMD9Q5K651 1589 aa22.82■■□□□ 1.24
BRAT1-201ENST00000340611 EFCAB5A4FU69 1503 aa22.82■■□□□ 1.24
BRAT1-201ENST00000340611 PCF11O94913 1555 aaKnown RBP22.81■■□□□ 1.24
BRAT1-201ENST00000340611 NUP160Q12769 1436 aa22.78■■□□□ 1.24
BRAT1-201ENST00000340611 JPH4Q96JJ6 628 aa22.78■■□□□ 1.24
BRAT1-201ENST00000340611 DISP1Q96F81 1524 aa22.74■■□□□ 1.23
BRAT1-201ENST00000340611 BCL11AQ9H165 835 aa22.74■■□□□ 1.23
BRAT1-201ENST00000340611 UGGT2Q9NYU1 1516 aa22.72■■□□□ 1.23
BRAT1-201ENST00000340611 FMN1Q68DA7 1419 aa22.69■■□□□ 1.22
BRAT1-201ENST00000340611 KIAA0556O60303 1618 aa22.69■■□□□ 1.22
BRAT1-201ENST00000340611 CASKIN1Q8WXD9 1431 aa22.66■■□□□ 1.22
BRAT1-201ENST00000340611 LRRIQ1Q96JM4 1722 aa22.65■■□□□ 1.22
BRAT1-201ENST00000340611 TIAM1Q13009 1591 aa22.64■■□□□ 1.22
BRAT1-201ENST00000340611 FYCO1Q9BQS8 1478 aa22.63■■□□□ 1.21
BRAT1-201ENST00000340611 PRG4Q92954 1404 aaPredicted RBP22.62■■□□□ 1.21
BRAT1-201ENST00000340611 ERCC6L2Q5T890 1561 aa22.59■■□□□ 1.21
BRAT1-201ENST00000340611 CENPBP07199 599 aaPredicted RBP22.58■■□□□ 1.21
BRAT1-201ENST00000340611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.58■■□□□ 1.21
BRAT1-201ENST00000340611 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.2
BRAT1-201ENST00000340611 PLB1Q6P1J6 1458 aa22.57■■□□□ 1.2
BRAT1-201ENST00000340611 CDK13Q14004 1512 aaKnown RBP22.56■■□□□ 1.2
BRAT1-201ENST00000340611 LRRC9Q6ZRR7 1453 aa22.56■■□□□ 1.2
BRAT1-201ENST00000340611 CARMIL2Q6F5E8 1435 aa22.55■■□□□ 1.2
BRAT1-201ENST00000340611 CFAP43Q8NDM7 1665 aa22.54■■□□□ 1.2
BRAT1-201ENST00000340611 ITGAEP38570 1179 aa22.49■■□□□ 1.19
BRAT1-201ENST00000340611 CCER1Q8TC90 406 aaPredicted RBP22.49■■□□□ 1.19
BRAT1-201ENST00000340611 MTUS2Q5JR59 1369 aa22.49■■□□□ 1.19
BRAT1-201ENST00000340611 EPRSP07814 1512 aaKnown RBP22.48■■□□□ 1.19
BRAT1-201ENST00000340611 PHLDB1Q86UU1 1377 aa22.48■■□□□ 1.19
BRAT1-201ENST00000340611 MAGI3Q5TCQ9 1506 aa22.47■■□□□ 1.19
BRAT1-201ENST00000340611 NUP153P49790 1475 aaKnown RBP22.46■■□□□ 1.19
BRAT1-201ENST00000340611 MAP3K1Q13233 1512 aa22.46■■□□□ 1.19
BRAT1-201ENST00000340611 CLASP1Q7Z460 1538 aa22.46■■□□□ 1.19
BRAT1-201ENST00000340611 HECW1Q76N89 1606 aa22.46■■□□□ 1.19
BRAT1-201ENST00000340611 RAPGEF6Q8TEU7 1601 aa22.46■■□□□ 1.19
BRAT1-201ENST00000340611 PTPRGP23470 1445 aa22.44■■□□□ 1.18
BRAT1-201ENST00000340611 SHROOM2Q13796 1616 aa22.44■■□□□ 1.18
BRAT1-201ENST00000340611 PRKCSHP14314 528 aaPredicted RBP22.42■■□□□ 1.18
BRAT1-201ENST00000340611 OSCARQ8IYS5 282 aa22.42■■□□□ 1.18
BRAT1-201ENST00000340611 FAM50AQ14320 339 aaKnown RBP22.39■■□□□ 1.17
BRAT1-201ENST00000340611 CCDC18Q5T9S5 1454 aa22.36■■□□□ 1.17
BRAT1-201ENST00000340611 CCNB3Q8WWL7 1395 aa22.34■■□□□ 1.17
BRAT1-201ENST00000340611 DIEXFQ68CQ4 756 aaKnown RBP22.33■■□□□ 1.17
BRAT1-201ENST00000340611 ABCA8O94911 1581 aa22.33■■□□□ 1.17
BRAT1-201ENST00000340611 NCOA2Q15596 1464 aa22.33■■□□□ 1.17
BRAT1-201ENST00000340611 YTHDC1Q96MU7 727 aaKnown RBP22.32■■□□□ 1.16
BRAT1-201ENST00000340611 RRBP1Q9P2E9 1410 aaKnown RBP22.32■■□□□ 1.16
BRAT1-201ENST00000340611 EHBP1L1Q8N3D4 1523 aa22.29■■□□□ 1.16
BRAT1-201ENST00000340611 ATP10BO94823 1461 aa22.29■■□□□ 1.16
BRAT1-201ENST00000340611 SUPT6HQ7KZ85 1726 aaKnown RBP22.27■■□□□ 1.16
BRAT1-201ENST00000340611 UACAQ9BZF9 1416 aa22.26■■□□□ 1.15
BRAT1-201ENST00000340611 CDK11AQ9UQ88 783 aaPredicted RBP22.23■■□□□ 1.15
BRAT1-201ENST00000340611 FGD6Q6ZV73 1430 aa22.22■■□□□ 1.15
BRAT1-201ENST00000340611 KIF14Q15058 1648 aa22.21■■□□□ 1.15
BRAT1-201ENST00000340611 PLEKHD1A6NEE1 506 aa22.2■■□□□ 1.15
BRAT1-201ENST00000340611 MYOM3Q5VTT5 1437 aa22.19■■□□□ 1.14
BRAT1-201ENST00000340611 ZNF644Q9H582 1327 aaPredicted RBP22.18■■□□□ 1.14
BRAT1-201ENST00000340611 KCNH8Q96L42 1107 aa22.17■■□□□ 1.14
BRAT1-201ENST00000340611 TROQ12816 1431 aaPredicted RBP22.17■■□□□ 1.14
BRAT1-201ENST00000340611 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
BRAT1-201ENST00000340611 ABCC2Q92887 1545 aa22.15■■□□□ 1.14
BRAT1-201ENST00000340611 ZNF777Q9ULD5 760 aaPredicted RBP22.14■■□□□ 1.14
BRAT1-201ENST00000340611 ANP32EQ9BTT0 268 aa22.12■■□□□ 1.13
BRAT1-201ENST00000340611 CHIC2Q9UKJ5 165 aa22.11■■□□□ 1.13
BRAT1-201ENST00000340611 PTPN23Q9H3S7 1636 aa22.1■■□□□ 1.13
BRAT1-201ENST00000340611 PTPRKQ15262 1439 aa22.09■■□□□ 1.13
BRAT1-201ENST00000340611 ADCY10Q96PN6 1610 aa22.09■■□□□ 1.13
BRAT1-201ENST00000340611 ZCCHC11Q5TAX3 1644 aaKnown RBP22.07■■□□□ 1.12
BRAT1-201ENST00000340611 CFDP1Q9UEE9 299 aaPredicted RBP22.06■■□□□ 1.12
BRAT1-201ENST00000340611 CYB5RLQ6IPT4 315 aa22.05■■□□□ 1.12
BRAT1-201ENST00000340611 GPATCH8Q9UKJ3 1502 aaKnown RBP22.03■■□□□ 1.12
BRAT1-201ENST00000340611 RRP7BPQ9NSQ0 103 aa22.01■■□□□ 1.11
BRAT1-201ENST00000340611 KDM5BQ9UGL1 1544 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms