RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 PRG4Q92954 1404 aaPredicted RBP26.34■■□□□ 1.81
VAPA-201ENST00000340541 CUL7Q14999 1698 aa26.31■■□□□ 1.8
VAPA-201ENST00000340541 RUSC2Q8N2Y8 1516 aa26.25■■□□□ 1.79
VAPA-201ENST00000340541 KIAA0586Q9BVV6 1533 aa26.2■■□□□ 1.79
VAPA-201ENST00000340541 CARMIL1Q5VZK9 1371 aa26.2■■□□□ 1.78
VAPA-201ENST00000340541 NPM1P06748 294 aaKnown RBP eCLIP26.15■■□□□ 1.78
VAPA-201ENST00000340541 KIF13AQ9H1H9 1805 aa26.06■■□□□ 1.76
VAPA-201ENST00000340541 RAPGEF2Q9Y4G8 1499 aa26.04■■□□□ 1.76
VAPA-201ENST00000340541 MAPKBP1O60336 1514 aa26.04■■□□□ 1.76
VAPA-201ENST00000340541 ABCC10Q5T3U5 1492 aa26.03■■□□□ 1.76
VAPA-201ENST00000340541 FAM69CQ0P6D2 419 aa26■■□□□ 1.75
VAPA-201ENST00000340541 ADCY10Q96PN6 1610 aa25.99■■□□□ 1.75
VAPA-201ENST00000340541 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
VAPA-201ENST00000340541 PRXQ9BXM0 1461 aa25.97■■□□□ 1.75
VAPA-201ENST00000340541 PTPRGP23470 1445 aa25.97■■□□□ 1.75
VAPA-201ENST00000340541 CARMIL2Q6F5E8 1435 aa25.96■■□□□ 1.75
VAPA-201ENST00000340541 IQGAP2Q13576 1575 aa25.92■■□□□ 1.74
VAPA-201ENST00000340541 TNIKQ9UKE5 1360 aa25.92■■□□□ 1.74
VAPA-201ENST00000340541 DIP2BQ9P265 1576 aa25.89■■□□□ 1.73
VAPA-201ENST00000340541 EEA1Q15075 1411 aa25.88■■□□□ 1.73
VAPA-201ENST00000340541 CSRNP3Q8WYN3 585 aa25.87■■□□□ 1.73
VAPA-201ENST00000340541 CTTNBP2Q8WZ74 1663 aa25.82■■□□□ 1.72
VAPA-201ENST00000340541 ABCC2Q92887 1545 aa25.81■■□□□ 1.72
VAPA-201ENST00000340541 UGGT2Q9NYU1 1516 aa25.8■■□□□ 1.72
VAPA-201ENST00000340541 UHRF1BP1LA0JNW5 1464 aa25.79■■□□□ 1.72
VAPA-201ENST00000340541 DISP1Q96F81 1524 aa25.78■■□□□ 1.72
VAPA-201ENST00000340541 TTBK1Q5TCY1 1321 aaPredicted RBP25.77■■□□□ 1.72
VAPA-201ENST00000340541 UACAQ9BZF9 1416 aa25.76■■□□□ 1.71
VAPA-201ENST00000340541 PLB1Q6P1J6 1458 aa25.75■■□□□ 1.71
VAPA-201ENST00000340541 FAM9AQ8IZU1 332 aaPredicted RBP25.74■■□□□ 1.71
VAPA-201ENST00000340541 ASXL2Q76L83 1435 aa25.71■■□□□ 1.71
VAPA-201ENST00000340541 KIAA0556O60303 1618 aa25.69■■□□□ 1.7
VAPA-201ENST00000340541 KDM6BO15054 1643 aa25.68■■□□□ 1.7
VAPA-201ENST00000340541 GLI2P10070 1586 aa25.68■■□□□ 1.7
VAPA-201ENST00000340541 KIF21BO75037 1637 aa25.66■■□□□ 1.7
VAPA-201ENST00000340541 TSPOAP1O95153 1857 aa25.66■■□□□ 1.7
VAPA-201ENST00000340541 KDM5BQ9UGL1 1544 aa25.66■■□□□ 1.7
VAPA-201ENST00000340541 GOLGA3Q08378 1498 aa25.6■■□□□ 1.69
VAPA-201ENST00000340541 EPRSP07814 1512 aaKnown RBP25.55■■□□□ 1.68
VAPA-201ENST00000340541 ZCCHC11Q5TAX3 1644 aaKnown RBP25.52■■□□□ 1.68
VAPA-201ENST00000340541 PPRC1Q5VV67 1664 aaKnown RBP25.52■■□□□ 1.68
VAPA-201ENST00000340541 SAMD9Q5K651 1589 aa25.51■■□□□ 1.67
VAPA-201ENST00000340541 KDM4FA0A1W2PPD8 638 aa25.49■■□□□ 1.67
VAPA-201ENST00000340541 MAP3K4Q9Y6R4 1608 aa25.48■■□□□ 1.67
VAPA-201ENST00000340541 TEX14Q8IWB6 1497 aa25.47■■□□□ 1.67
VAPA-201ENST00000340541 WDR7Q9Y4E6 1490 aa25.46■■□□□ 1.67
VAPA-201ENST00000340541 ABCA8O94911 1581 aa25.43■■□□□ 1.66
VAPA-201ENST00000340541 P3H3Q8IVL6 736 aa25.41■■□□□ 1.66
VAPA-201ENST00000340541 EHMT2Q96KQ7 1210 aa25.39■■□□□ 1.66
VAPA-201ENST00000340541 COL17A1Q9UMD9 1497 aaPredicted RBP25.38■■□□□ 1.65
VAPA-201ENST00000340541 UBTFP17480 764 aaKnown RBP25.35■■□□□ 1.65
VAPA-201ENST00000340541 RANGAP1P46060 587 aaPredicted RBP25.35■■□□□ 1.65
VAPA-201ENST00000340541 EFCAB5A4FU69 1503 aa25.34■■□□□ 1.65
VAPA-201ENST00000340541 MAGI3Q5TCQ9 1506 aa25.33■■□□□ 1.65
VAPA-201ENST00000340541 CD109Q6YHK3 1445 aa25.33■■□□□ 1.65
VAPA-201ENST00000340541 KCNH8Q96L42 1107 aa25.32■■□□□ 1.64
VAPA-201ENST00000340541 FHOD3Q2V2M9 1422 aa25.31■■□□□ 1.64
VAPA-201ENST00000340541 CFAP43Q8NDM7 1665 aa25.31■■□□□ 1.64
VAPA-201ENST00000340541 RAPGEF6Q8TEU7 1601 aa25.25■■□□□ 1.63
VAPA-201ENST00000340541 ATP10BO94823 1461 aa25.24■■□□□ 1.63
VAPA-201ENST00000340541 ADGRL1O94910 1474 aa25.23■■□□□ 1.63
VAPA-201ENST00000340541 ARHGAP35Q9NRY4 1499 aa25.23■■□□□ 1.63
VAPA-201ENST00000340541 NUP153P49790 1475 aaKnown RBP25.18■■□□□ 1.62
VAPA-201ENST00000340541 PHLDB1Q86UU1 1377 aa25.18■■□□□ 1.62
VAPA-201ENST00000340541 ARAP3Q8WWN8 1544 aa25.15■■□□□ 1.62
VAPA-201ENST00000340541 ARID3CA6NKF2 412 aa25.14■■□□□ 1.62
VAPA-201ENST00000340541 ABCA9Q8IUA7 1624 aa25.11■■□□□ 1.61
VAPA-201ENST00000340541 FMN1Q68DA7 1419 aa25.08■■□□□ 1.61
VAPA-201ENST00000340541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.07■■□□□ 1.6
VAPA-201ENST00000340541 HNRNPUL2Q1KMD3 747 aaKnown RBP25.07■■□□□ 1.6
VAPA-201ENST00000340541 NEO1Q92859 1461 aa25.02■■□□□ 1.6
VAPA-201ENST00000340541 PLEKHD1A6NEE1 506 aa25.02■■□□□ 1.6
VAPA-201ENST00000340541 CLIP1P30622 1438 aa25.01■■□□□ 1.59
VAPA-201ENST00000340541 HECW1Q76N89 1606 aa24.99■■□□□ 1.59
VAPA-201ENST00000340541 CDK13Q14004 1512 aaKnown RBP24.98■■□□□ 1.59
VAPA-201ENST00000340541 LRRIQ1Q96JM4 1722 aa24.93■■□□□ 1.58
VAPA-201ENST00000340541 RAPGEF3O95398 923 aa24.93■■□□□ 1.58
VAPA-201ENST00000340541 PCF11O94913 1555 aaKnown RBP24.93■■□□□ 1.58
VAPA-201ENST00000340541 CASKIN1Q8WXD9 1431 aa24.91■■□□□ 1.58
VAPA-201ENST00000340541 LOC105371045A0A1W2PR82 267 aa24.89■■□□□ 1.58
VAPA-201ENST00000340541 CEP162Q5TB80 1403 aa24.88■■□□□ 1.57
VAPA-201ENST00000340541 ATP1B4Q9UN42 357 aaPredicted RBP24.88■■□□□ 1.57
VAPA-201ENST00000340541 HECW2Q9P2P5 1572 aa24.88■■□□□ 1.57
VAPA-201ENST00000340541 FYCO1Q9BQS8 1478 aa24.83■■□□□ 1.57
VAPA-201ENST00000340541 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.83■■□□□ 1.572e-8■■■■□ 23.9
VAPA-201ENST00000340541 AKNAQ7Z591 1439 aa24.83■■□□□ 1.57
VAPA-201ENST00000340541 DENND4BO75064 1496 aaPredicted RBP24.83■■□□□ 1.56
VAPA-201ENST00000340541 CFAP74Q9C0B2 1584 aa24.82■■□□□ 1.56
VAPA-201ENST00000340541 FANCAO15360 1455 aa24.82■■□□□ 1.56
VAPA-201ENST00000340541 FRMPD1Q5SYB0 1578 aa24.81■■□□□ 1.56
VAPA-201ENST00000340541 TTC37Q6PGP7 1564 aa24.8■■□□□ 1.56
VAPA-201ENST00000340541 ADAMTSL3P82987 1691 aa24.79■■□□□ 1.56
VAPA-201ENST00000340541 CCDC18Q5T9S5 1454 aa24.79■■□□□ 1.56
VAPA-201ENST00000340541 CDK11AQ9UQ88 783 aaPredicted RBP24.77■■□□□ 1.56
VAPA-201ENST00000340541 TROQ12816 1431 aaPredicted RBP24.76■■□□□ 1.55
VAPA-201ENST00000340541 PTPRMP28827 1452 aa24.76■■□□□ 1.55
VAPA-201ENST00000340541 RICTORQ6R327 1708 aa24.75■■□□□ 1.55
VAPA-201ENST00000340541 ARID4BQ4LE39 1312 aaPredicted RBP24.75■■□□□ 1.55
VAPA-201ENST00000340541 KIF14Q15058 1648 aa24.75■■□□□ 1.55
VAPA-201ENST00000340541 PLCH2O75038 1416 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms