RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 FHAD1B1AJZ9 1412 aa21.72■■□□□ 1.07
TPM3-206ENST00000330188 CCNB3Q8WWL7 1395 aa21.71■■□□□ 1.07
TPM3-206ENST00000330188 PCF11O94913 1555 aaKnown RBP21.7■■□□□ 1.06
TPM3-206ENST00000330188 CFAP43Q8NDM7 1665 aa21.7■■□□□ 1.06
TPM3-206ENST00000330188 EFCAB5A4FU69 1503 aa21.7■■□□□ 1.06
TPM3-206ENST00000330188 ZNF316A6NFI3 1004 aaPredicted RBP21.68■■□□□ 1.06
TPM3-206ENST00000330188 LRRC9Q6ZRR7 1453 aa21.67■■□□□ 1.06
TPM3-206ENST00000330188 DHX57Q6P158 1386 aaKnown RBP21.66■■□□□ 1.06
TPM3-206ENST00000330188 FHOD3Q2V2M9 1422 aa21.64■■□□□ 1.05
TPM3-206ENST00000330188 CLSPNQ9HAW4 1339 aa21.64■■□□□ 1.05
TPM3-206ENST00000330188 P3H3Q8IVL6 736 aa21.62■■□□□ 1.05
TPM3-206ENST00000330188 GAPVD1Q14C86 1478 aa21.62■■□□□ 1.05
TPM3-206ENST00000330188 TDRD9Q8NDG6 1382 aaKnown RBP21.62■■□□□ 1.05
TPM3-206ENST00000330188 FYCO1Q9BQS8 1478 aa21.61■■□□□ 1.05
TPM3-206ENST00000330188 AQRO60306 1485 aaKnown RBP eCLIP21.59■■□□□ 1.054e-7■■□□□ 12.7
TPM3-206ENST00000330188 TARBP1Q13395 1621 aaKnown RBP21.59■■□□□ 1.05
TPM3-206ENST00000330188 CASKIN1Q8WXD9 1431 aa21.57■■□□□ 1.04
TPM3-206ENST00000330188 PHLDB1Q86UU1 1377 aa21.56■■□□□ 1.04
TPM3-206ENST00000330188 SAMD9Q5K651 1589 aa21.54■■□□□ 1.04
TPM3-206ENST00000330188 FMN1Q68DA7 1419 aa21.51■■□□□ 1.03
TPM3-206ENST00000330188 ITGAEP38570 1179 aa21.5■■□□□ 1.03
TPM3-206ENST00000330188 SNAPC4Q5SXM2 1469 aa21.49■■□□□ 1.03
TPM3-206ENST00000330188 PBRM1Q86U86 1689 aa21.48■■□□□ 1.03
TPM3-206ENST00000330188 ATP1B4Q9UN42 357 aaPredicted RBP21.48■■□□□ 1.03
TPM3-206ENST00000330188 RAB3GAP2Q9H2M9 1393 aa21.45■■□□□ 1.02
TPM3-206ENST00000330188 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.02
TPM3-206ENST00000330188 LRRIQ1Q96JM4 1722 aa21.43■■□□□ 1.02
TPM3-206ENST00000330188 SCAF1Q9H7N4 1312 aaKnown RBP21.42■■□□□ 1.02
TPM3-206ENST00000330188 SETD5Q9C0A6 1442 aa21.4■■□□□ 1.02
TPM3-206ENST00000330188 FAM50AQ14320 339 aaKnown RBP21.38■■□□□ 1.01
TPM3-206ENST00000330188 GRIN2BQ13224 1484 aa21.38■■□□□ 1.01
TPM3-206ENST00000330188 ADAMTS12P58397 1594 aa21.38■■□□□ 1.01
TPM3-206ENST00000330188 THOC2Q8NI27 1593 aaKnown RBP21.38■■□□□ 1.01
TPM3-206ENST00000330188 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.38■■□□□ 1.013e-7■■□□□ 11.8
TPM3-206ENST00000330188 MAPKBP1O60336 1514 aa21.37■■□□□ 1.01
TPM3-206ENST00000330188 ACIN1Q9UKV3 1341 aaKnown RBP21.37■■□□□ 1.01
TPM3-206ENST00000330188 NEUROD1Q13562 356 aa21.33■■□□□ 1.01
TPM3-206ENST00000330188 MTUS2Q5JR59 1369 aa21.32■■□□□ 1
TPM3-206ENST00000330188 IQGAP2Q13576 1575 aa21.31■■□□□ 1
TPM3-206ENST00000330188 FGD6Q6ZV73 1430 aa21.31■■□□□ 1
TPM3-206ENST00000330188 WDR62O43379 1518 aa21.31■■□□□ 1
TPM3-206ENST00000330188 CENPBP07199 599 aaPredicted RBP21.29■■□□□ 1
TPM3-206ENST00000330188 IFT140Q96RY7 1462 aa21.29■■□□□ 1
TPM3-206ENST00000330188 MIER1Q8N108 512 aa21.28■■□□□ 1
TPM3-206ENST00000330188 EHBP1L1Q8N3D4 1523 aa21.27■■□□□ 1
TPM3-206ENST00000330188 SUPT6HQ7KZ85 1726 aaKnown RBP21.27■■□□□ 1
TPM3-206ENST00000330188 NCOA2Q15596 1464 aa21.25■□□□□ 0.99
TPM3-206ENST00000330188 ZNF608Q9ULD9 1512 aaPredicted RBP21.25■□□□□ 0.99
TPM3-206ENST00000330188 CCDC18Q5T9S5 1454 aa21.23■□□□□ 0.99
TPM3-206ENST00000330188 HECW1Q76N89 1606 aa21.23■□□□□ 0.99
TPM3-206ENST00000330188 MAGI3Q5TCQ9 1506 aa21.21■□□□□ 0.99
TPM3-206ENST00000330188 MYOM3Q5VTT5 1437 aa21.21■□□□□ 0.99
TPM3-206ENST00000330188 ARHGEF11O15085 1522 aa21.2■□□□□ 0.99
TPM3-206ENST00000330188 UGGT2Q9NYU1 1516 aa21.2■□□□□ 0.98
TPM3-206ENST00000330188 PTPRKQ15262 1439 aa21.17■□□□□ 0.98
TPM3-206ENST00000330188 EIF4G3O43432 1585 aaKnown RBP21.16■□□□□ 0.98
TPM3-206ENST00000330188 PTPN23Q9H3S7 1636 aa21.15■□□□□ 0.98
TPM3-206ENST00000330188 EPRSP07814 1512 aaKnown RBP21.14■□□□□ 0.98
TPM3-206ENST00000330188 HFM1A2PYH4 1435 aa21.14■□□□□ 0.97
TPM3-206ENST00000330188 KIAA0586Q9BVV6 1533 aa21.11■□□□□ 0.97
TPM3-206ENST00000330188 SIN3AQ96ST3 1273 aa21.11■□□□□ 0.97
TPM3-206ENST00000330188 KIAA0556O60303 1618 aa21.1■□□□□ 0.97
TPM3-206ENST00000330188 CDK13Q14004 1512 aaKnown RBP21.1■□□□□ 0.97
TPM3-206ENST00000330188 YTHDC1Q96MU7 727 aaKnown RBP21.1■□□□□ 0.97
TPM3-206ENST00000330188 ERCC6Q03468 1493 aa21.09■□□□□ 0.97
TPM3-206ENST00000330188 GRIN2AQ12879 1464 aa21.09■□□□□ 0.97
TPM3-206ENST00000330188 TCOF1Q13428 1488 aaKnown RBP21.09■□□□□ 0.97
TPM3-206ENST00000330188 DISP1Q96F81 1524 aa21.08■□□□□ 0.96
TPM3-206ENST00000330188 NAIPQ13075 1403 aa21.07■□□□□ 0.96
TPM3-206ENST00000330188 TIMELESSQ9UNS1 1208 aa21.05■□□□□ 0.96
TPM3-206ENST00000330188 GTF3C3Q9Y5Q9 886 aa21.05■□□□□ 0.96
TPM3-206ENST00000330188 UACAQ9BZF9 1416 aa21.04■□□□□ 0.96
TPM3-206ENST00000330188 MAGI1Q96QZ7 1491 aaPredicted RBP21.03■□□□□ 0.96
TPM3-206ENST00000330188 GCC2Q8IWJ2 1684 aa21■□□□□ 0.95
TPM3-206ENST00000330188 MIA2Q96PC5 1412 aa21■□□□□ 0.95
TPM3-206ENST00000330188 RAPGEF6Q8TEU7 1601 aa20.99■□□□□ 0.95
TPM3-206ENST00000330188 CEP170Q5SW79 1584 aa20.97■□□□□ 0.95
TPM3-206ENST00000330188 NUP153P49790 1475 aaKnown RBP20.97■□□□□ 0.95
TPM3-206ENST00000330188 SYNJ2O15056 1496 aa20.96■□□□□ 0.95
TPM3-206ENST00000330188 AKNAQ7Z591 1439 aa20.95■□□□□ 0.94
TPM3-206ENST00000330188 ARID3CA6NKF2 412 aa20.95■□□□□ 0.94
TPM3-206ENST00000330188 PPP1R15AO75807 674 aaPredicted RBP20.94■□□□□ 0.94
TPM3-206ENST00000330188 CHMP7Q8WUX9 453 aaPredicted RBP20.9■□□□□ 0.94
TPM3-206ENST00000330188 RRP7BPQ9NSQ0 103 aa20.9■□□□□ 0.94
TPM3-206ENST00000330188 KDM6BO15054 1643 aa20.89■□□□□ 0.93
TPM3-206ENST00000330188 CHIC2Q9UKJ5 165 aa20.89■□□□□ 0.93
TPM3-206ENST00000330188 TONSLQ96HA7 1378 aa20.89■□□□□ 0.93
TPM3-206ENST00000330188 NUP160Q12769 1436 aa20.88■□□□□ 0.93
TPM3-206ENST00000330188 DNMT1P26358 1616 aaKnown RBP20.85■□□□□ 0.93
TPM3-206ENST00000330188 DENND4BO75064 1496 aaPredicted RBP20.84■□□□□ 0.93
TPM3-206ENST00000330188 DAPK1P53355 1430 aa20.83■□□□□ 0.93
TPM3-206ENST00000330188 PLB1Q6P1J6 1458 aa20.82■□□□□ 0.92
TPM3-206ENST00000330188 KDM5BQ9UGL1 1544 aa20.82■□□□□ 0.92
TPM3-206ENST00000330188 CDK11AQ9UQ88 783 aaPredicted RBP20.81■□□□□ 0.92
TPM3-206ENST00000330188 FBLN2P98095 1184 aa20.81■□□□□ 0.92
TPM3-206ENST00000330188 TROQ12816 1431 aaPredicted RBP20.81■□□□□ 0.92
TPM3-206ENST00000330188 CARMIL2Q6F5E8 1435 aa20.8■□□□□ 0.92
TPM3-206ENST00000330188 ROCK1Q13464 1354 aa20.8■□□□□ 0.92
TPM3-206ENST00000330188 ADCY10Q96PN6 1610 aa20.79■□□□□ 0.92
TPM3-206ENST00000330188 ABCC5O15440 1437 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms