RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 JPH4Q96JJ6 628 aa27.38■■□□□ 1.97
PDLIM1-201ENST00000329399 SHROOM2Q13796 1616 aa27.33■■□□□ 1.96
PDLIM1-201ENST00000329399 KIAA0586Q9BVV6 1533 aa27.29■■□□□ 1.96
PDLIM1-201ENST00000329399 PRG4Q92954 1404 aaPredicted RBP27.29■■□□□ 1.96
PDLIM1-201ENST00000329399 RAPGEF2Q9Y4G8 1499 aa27.27■■□□□ 1.96
PDLIM1-201ENST00000329399 FAM9AQ8IZU1 332 aaPredicted RBP27.23■■□□□ 1.95
PDLIM1-201ENST00000329399 CSRNP3Q8WYN3 585 aa27.22■■□□□ 1.95
PDLIM1-201ENST00000329399 PRXQ9BXM0 1461 aa27.21■■□□□ 1.95
PDLIM1-201ENST00000329399 IQGAP2Q13576 1575 aa27.08■■□□□ 1.93
PDLIM1-201ENST00000329399 EEA1Q15075 1411 aa27.05■■□□□ 1.92
PDLIM1-201ENST00000329399 TTBK1Q5TCY1 1321 aaPredicted RBP27.02■■□□□ 1.92
PDLIM1-201ENST00000329399 DISP1Q96F81 1524 aa27.01■■□□□ 1.91
PDLIM1-201ENST00000329399 UGGT2Q9NYU1 1516 aa26.96■■□□□ 1.91
PDLIM1-201ENST00000329399 EHMT2Q96KQ7 1210 aa26.95■■□□□ 1.91
PDLIM1-201ENST00000329399 PTPRGP23470 1445 aa26.94■■□□□ 1.9
PDLIM1-201ENST00000329399 CARMIL2Q6F5E8 1435 aa26.94■■□□□ 1.9
PDLIM1-201ENST00000329399 TRHP20396 242 aaPredicted RBP26.93■■□□□ 1.9
PDLIM1-201ENST00000329399 TNIKQ9UKE5 1360 aa26.92■■□□□ 1.9
PDLIM1-201ENST00000329399 CTTNBP2Q8WZ74 1663 aa26.91■■□□□ 1.9
PDLIM1-201ENST00000329399 ADCY10Q96PN6 1610 aa26.85■■□□□ 1.89
PDLIM1-201ENST00000329399 KIAA0556O60303 1618 aa26.84■■□□□ 1.89
PDLIM1-201ENST00000329399 P3H3Q8IVL6 736 aa26.83■■□□□ 1.89
PDLIM1-201ENST00000329399 RANGAP1P46060 587 aaPredicted RBP26.82■■□□□ 1.88
PDLIM1-201ENST00000329399 KIF21BO75037 1637 aa26.81■■□□□ 1.88
PDLIM1-201ENST00000329399 UACAQ9BZF9 1416 aa26.74■■□□□ 1.87
PDLIM1-201ENST00000329399 NPM1P06748 294 aaKnown RBP eCLIP26.74■■□□□ 1.87
PDLIM1-201ENST00000329399 GOLGA3Q08378 1498 aa26.73■■□□□ 1.87
PDLIM1-201ENST00000329399 UBTFP17480 764 aaKnown RBP26.73■■□□□ 1.87
PDLIM1-201ENST00000329399 PLB1Q6P1J6 1458 aa26.69■■□□□ 1.86
PDLIM1-201ENST00000329399 UHRF1BP1LA0JNW5 1464 aa26.68■■□□□ 1.86
PDLIM1-201ENST00000329399 ABCC2Q92887 1545 aa26.67■■□□□ 1.86
PDLIM1-201ENST00000329399 SAMD9Q5K651 1589 aa26.65■■□□□ 1.86
PDLIM1-201ENST00000329399 MAPKBP1O60336 1514 aa26.62■■□□□ 1.85
PDLIM1-201ENST00000329399 FHOD3Q2V2M9 1422 aa26.59■■□□□ 1.85
PDLIM1-201ENST00000329399 FAM69CQ0P6D2 419 aa26.59■■□□□ 1.85
PDLIM1-201ENST00000329399 ABCA8O94911 1581 aa26.58■■□□□ 1.85
PDLIM1-201ENST00000329399 KDM5BQ9UGL1 1544 aa26.58■■□□□ 1.85
PDLIM1-201ENST00000329399 ARID3CA6NKF2 412 aa26.56■■□□□ 1.84
PDLIM1-201ENST00000329399 ABCC10Q5T3U5 1492 aa26.56■■□□□ 1.84
PDLIM1-201ENST00000329399 ASXL2Q76L83 1435 aa26.55■■□□□ 1.84
PDLIM1-201ENST00000329399 KIF13AQ9H1H9 1805 aa26.55■■□□□ 1.84
PDLIM1-201ENST00000329399 ZCCHC11Q5TAX3 1644 aaKnown RBP26.5■■□□□ 1.83
PDLIM1-201ENST00000329399 DIP2BQ9P265 1576 aa26.49■■□□□ 1.83
PDLIM1-201ENST00000329399 ARHGAP35Q9NRY4 1499 aa26.47■■□□□ 1.83
PDLIM1-201ENST00000329399 EFCAB5A4FU69 1503 aa26.44■■□□□ 1.82
PDLIM1-201ENST00000329399 ATP10BO94823 1461 aa26.44■■□□□ 1.82
PDLIM1-201ENST00000329399 LOC105371045A0A1W2PR82 267 aa26.4■■□□□ 1.82
PDLIM1-201ENST00000329399 RAPGEF6Q8TEU7 1601 aa26.39■■□□□ 1.82
PDLIM1-201ENST00000329399 NUP153P49790 1475 aaKnown RBP26.38■■□□□ 1.81
PDLIM1-201ENST00000329399 EPRSP07814 1512 aaKnown RBP26.38■■□□□ 1.81
PDLIM1-201ENST00000329399 KCNH8Q96L42 1107 aa26.37■■□□□ 1.81
PDLIM1-201ENST00000329399 WDR7Q9Y4E6 1490 aa26.35■■□□□ 1.81
PDLIM1-201ENST00000329399 TSPOAP1O95153 1857 aa26.31■■□□□ 1.8
PDLIM1-201ENST00000329399 GLI2P10070 1586 aa26.3■■□□□ 1.8
PDLIM1-201ENST00000329399 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.3■■□□□ 1.8
PDLIM1-201ENST00000329399 HNRNPUL2Q1KMD3 747 aaKnown RBP26.3■■□□□ 1.8
PDLIM1-201ENST00000329399 ATP1B4Q9UN42 357 aaPredicted RBP26.26■■□□□ 1.79
PDLIM1-201ENST00000329399 CLIP1P30622 1438 aa26.26■■□□□ 1.79
PDLIM1-201ENST00000329399 FMN1Q68DA7 1419 aa26.24■■□□□ 1.79
PDLIM1-201ENST00000329399 PPRC1Q5VV67 1664 aaKnown RBP26.23■■□□□ 1.79
PDLIM1-201ENST00000329399 CDK13Q14004 1512 aaKnown RBP26.21■■□□□ 1.79
PDLIM1-201ENST00000329399 MAP3K4Q9Y6R4 1608 aa26.19■■□□□ 1.78
PDLIM1-201ENST00000329399 PLEKHD1A6NEE1 506 aa26.16■■□□□ 1.78
PDLIM1-201ENST00000329399 CD109Q6YHK3 1445 aa26.16■■□□□ 1.78
PDLIM1-201ENST00000329399 CEP162Q5TB80 1403 aa26.14■■□□□ 1.78
PDLIM1-201ENST00000329399 COL17A1Q9UMD9 1497 aaPredicted RBP26.12■■□□□ 1.77
PDLIM1-201ENST00000329399 CASKIN1Q8WXD9 1431 aa26.09■■□□□ 1.77
PDLIM1-201ENST00000329399 LRRIQ1Q96JM4 1722 aa26.09■■□□□ 1.77
PDLIM1-201ENST00000329399 HECW1Q76N89 1606 aa26.08■■□□□ 1.77
PDLIM1-201ENST00000329399 PCF11O94913 1555 aaKnown RBP26.08■■□□□ 1.77
PDLIM1-201ENST00000329399 MAGI3Q5TCQ9 1506 aa26.05■■□□□ 1.76
PDLIM1-201ENST00000329399 CFAP43Q8NDM7 1665 aa26.05■■□□□ 1.76
PDLIM1-201ENST00000329399 KDM6BO15054 1643 aa26.04■■□□□ 1.76
PDLIM1-201ENST00000329399 ABCA9Q8IUA7 1624 aa26.04■■□□□ 1.76
PDLIM1-201ENST00000329399 TEX14Q8IWB6 1497 aa26.02■■□□□ 1.76
PDLIM1-201ENST00000329399 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.99■■□□□ 1.754e-10■■□□□ 11.9
PDLIM1-201ENST00000329399 FYCO1Q9BQS8 1478 aa25.97■■□□□ 1.75
PDLIM1-201ENST00000329399 CDK11AQ9UQ88 783 aaPredicted RBP25.96■■□□□ 1.75
PDLIM1-201ENST00000329399 TTC37Q6PGP7 1564 aa25.95■■□□□ 1.74
PDLIM1-201ENST00000329399 TROQ12816 1431 aaPredicted RBP25.93■■□□□ 1.74
PDLIM1-201ENST00000329399 KIF14Q15058 1648 aa25.91■■□□□ 1.74
PDLIM1-201ENST00000329399 CCDC18Q5T9S5 1454 aa25.9■■□□□ 1.74
PDLIM1-201ENST00000329399 RAPGEF3O95398 923 aa25.87■■□□□ 1.73
PDLIM1-201ENST00000329399 ARAP3Q8WWN8 1544 aa25.84■■□□□ 1.73
PDLIM1-201ENST00000329399 PLCH2O75038 1416 aa25.83■■□□□ 1.73
PDLIM1-201ENST00000329399 NEO1Q92859 1461 aa25.82■■□□□ 1.72
PDLIM1-201ENST00000329399 FANCAO15360 1455 aa25.82■■□□□ 1.72
PDLIM1-201ENST00000329399 AKNAQ7Z591 1439 aa25.81■■□□□ 1.72
PDLIM1-201ENST00000329399 PHLDB1Q86UU1 1377 aa25.79■■□□□ 1.72
PDLIM1-201ENST00000329399 VPS8Q8N3P4 1428 aa25.79■■□□□ 1.72
PDLIM1-201ENST00000329399 EFCAB2Q5VUJ9 269 aa25.73■■□□□ 1.71
PDLIM1-201ENST00000329399 MTUS2Q5JR59 1369 aa25.71■■□□□ 1.71
PDLIM1-201ENST00000329399 FRMPD1Q5SYB0 1578 aa25.71■■□□□ 1.71
PDLIM1-201ENST00000329399 KDM4FA0A1W2PPD8 638 aa25.7■■□□□ 1.7
PDLIM1-201ENST00000329399 MYO5CQ9NQX4 1742 aa25.7■■□□□ 1.7
PDLIM1-201ENST00000329399 SCAPERQ9BY12 1400 aa25.69■■□□□ 1.7
PDLIM1-201ENST00000329399 DENND4BO75064 1496 aaPredicted RBP25.68■■□□□ 1.7
PDLIM1-201ENST00000329399 KANK4Q5T7N3 995 aaPredicted RBP25.67■■□□□ 1.7
PDLIM1-201ENST00000329399 CDC42BPBQ9Y5S2 1711 aa25.67■■□□□ 1.7
PDLIM1-201ENST00000329399 ARHGAP5Q13017 1502 aa25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms