RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 P3H3Q8IVL6 736 aa24.19■■□□□ 1.46
USH1C-202ENST00000318024 EIF4G3O43432 1585 aaKnown RBP24.19■■□□□ 1.46
USH1C-202ENST00000318024 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
USH1C-202ENST00000318024 VPS8Q8N3P4 1428 aa24.18■■□□□ 1.46
USH1C-202ENST00000318024 ARAP1Q96P48 1450 aa24.18■■□□□ 1.46
USH1C-202ENST00000318024 ARHGAP35Q9NRY4 1499 aa24.18■■□□□ 1.46
USH1C-202ENST00000318024 ACIN1Q9UKV3 1341 aaKnown RBP24.16■■□□□ 1.46
USH1C-202ENST00000318024 SNAPC4Q5SXM2 1469 aa24.15■■□□□ 1.46
USH1C-202ENST00000318024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.14■■□□□ 1.45
USH1C-202ENST00000318024 ADAMTS12P58397 1594 aa24.12■■□□□ 1.45
USH1C-202ENST00000318024 FBLN2P98095 1184 aa24.11■■□□□ 1.45
USH1C-202ENST00000318024 APLP2Q06481 763 aa24.07■■□□□ 1.44
USH1C-202ENST00000318024 NEUROD1Q13562 356 aa24.07■■□□□ 1.44
USH1C-202ENST00000318024 CHMP7Q8WUX9 453 aaPredicted RBP24.07■■□□□ 1.44
USH1C-202ENST00000318024 CCER1Q8TC90 406 aaPredicted RBP24.05■■□□□ 1.44
USH1C-202ENST00000318024 CTTNBP2Q8WZ74 1663 aa24.03■■□□□ 1.44
USH1C-202ENST00000318024 FHOD3Q2V2M9 1422 aa24.01■■□□□ 1.43
USH1C-202ENST00000318024 MAGI1Q96QZ7 1491 aaPredicted RBP23.99■■□□□ 1.43
USH1C-202ENST00000318024 GRIN2AQ12879 1464 aa23.97■■□□□ 1.43
USH1C-202ENST00000318024 ATP1B4Q9UN42 357 aaPredicted RBP23.96■■□□□ 1.43
USH1C-202ENST00000318024 SYNJ2O15056 1496 aa23.95■■□□□ 1.42
USH1C-202ENST00000318024 DIEXFQ68CQ4 756 aaKnown RBP23.94■■□□□ 1.42
USH1C-202ENST00000318024 KANK4Q5T7N3 995 aaPredicted RBP23.91■■□□□ 1.42
USH1C-202ENST00000318024 EFCAB5A4FU69 1503 aa23.9■■□□□ 1.42
USH1C-202ENST00000318024 IQGAP2Q13576 1575 aa23.88■■□□□ 1.41
USH1C-202ENST00000318024 KIAA0586Q9BVV6 1533 aa23.85■■□□□ 1.41
USH1C-202ENST00000318024 GTF3C3Q9Y5Q9 886 aa23.83■■□□□ 1.4
USH1C-202ENST00000318024 SAMD9Q5K651 1589 aa23.83■■□□□ 1.4
USH1C-202ENST00000318024 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
USH1C-202ENST00000318024 CENPBP07199 599 aaPredicted RBP23.82■■□□□ 1.4
USH1C-202ENST00000318024 FMN1Q68DA7 1419 aa23.78■■□□□ 1.4
USH1C-202ENST00000318024 PCF11O94913 1555 aaKnown RBP23.78■■□□□ 1.4
USH1C-202ENST00000318024 NUP160Q12769 1436 aa23.76■■□□□ 1.39
USH1C-202ENST00000318024 JPH4Q96JJ6 628 aa23.75■■□□□ 1.39
USH1C-202ENST00000318024 UGGT2Q9NYU1 1516 aa23.74■■□□□ 1.39
USH1C-202ENST00000318024 CASKIN1Q8WXD9 1431 aa23.73■■□□□ 1.39
USH1C-202ENST00000318024 DISP1Q96F81 1524 aa23.71■■□□□ 1.39
USH1C-202ENST00000318024 FYCO1Q9BQS8 1478 aa23.69■■□□□ 1.38
USH1C-202ENST00000318024 MYT1Q01538 1121 aa23.69■■□□□ 1.38
USH1C-202ENST00000318024 TIAM1Q13009 1591 aa23.68■■□□□ 1.38
USH1C-202ENST00000318024 ARID3CA6NKF2 412 aa23.68■■□□□ 1.38
USH1C-202ENST00000318024 ZNF316A6NFI3 1004 aaPredicted RBP23.67■■□□□ 1.38
USH1C-202ENST00000318024 CHD1O14646 1710 aa23.65■■□□□ 1.38
USH1C-202ENST00000318024 KIAA0556O60303 1618 aa23.64■■□□□ 1.37
USH1C-202ENST00000318024 LRRC9Q6ZRR7 1453 aa23.63■■□□□ 1.37
USH1C-202ENST00000318024 MAP3K1Q13233 1512 aa23.62■■□□□ 1.37
USH1C-202ENST00000318024 HNRNPUL2Q1KMD3 747 aaKnown RBP23.61■■□□□ 1.37
USH1C-202ENST00000318024 CARMIL2Q6F5E8 1435 aa23.57■■□□□ 1.36
USH1C-202ENST00000318024 PRG4Q92954 1404 aaPredicted RBP23.54■■□□□ 1.36
USH1C-202ENST00000318024 CFAP43Q8NDM7 1665 aa23.54■■□□□ 1.36
USH1C-202ENST00000318024 MTUS2Q5JR59 1369 aa23.52■■□□□ 1.36
USH1C-202ENST00000318024 LRRIQ1Q96JM4 1722 aa23.52■■□□□ 1.36
USH1C-202ENST00000318024 PHLDB1Q86UU1 1377 aa23.5■■□□□ 1.35
USH1C-202ENST00000318024 PLB1Q6P1J6 1458 aa23.48■■□□□ 1.35
USH1C-202ENST00000318024 EPRSP07814 1512 aaKnown RBP23.48■■□□□ 1.35
USH1C-202ENST00000318024 CDK13Q14004 1512 aaKnown RBP23.48■■□□□ 1.35
USH1C-202ENST00000318024 HECW1Q76N89 1606 aa23.47■■□□□ 1.35
USH1C-202ENST00000318024 ITGAEP38570 1179 aa23.45■■□□□ 1.35
USH1C-202ENST00000318024 CCNB3Q8WWL7 1395 aa23.44■■□□□ 1.34
USH1C-202ENST00000318024 RRBP1Q9P2E9 1410 aaKnown RBP23.44■■□□□ 1.34
USH1C-202ENST00000318024 NUP153P49790 1475 aaKnown RBP23.43■■□□□ 1.34
USH1C-202ENST00000318024 CCDC18Q5T9S5 1454 aa23.43■■□□□ 1.34
USH1C-202ENST00000318024 MAGI3Q5TCQ9 1506 aa23.41■■□□□ 1.34
USH1C-202ENST00000318024 RAPGEF6Q8TEU7 1601 aa23.41■■□□□ 1.34
USH1C-202ENST00000318024 PTPRGP23470 1445 aa23.4■■□□□ 1.34
USH1C-202ENST00000318024 FAM50AQ14320 339 aaKnown RBP23.4■■□□□ 1.34
USH1C-202ENST00000318024 MIER1Q8N108 512 aa23.4■■□□□ 1.34
USH1C-202ENST00000318024 ERCC6L2Q5T890 1561 aa23.38■■□□□ 1.33
USH1C-202ENST00000318024 CLASP1Q7Z460 1538 aa23.35■■□□□ 1.33
USH1C-202ENST00000318024 SHROOM2Q13796 1616 aa23.35■■□□□ 1.33
USH1C-202ENST00000318024 NCOA2Q15596 1464 aa23.35■■□□□ 1.33
USH1C-202ENST00000318024 EHBP1L1Q8N3D4 1523 aa23.33■■□□□ 1.32
USH1C-202ENST00000318024 OSCARQ8IYS5 282 aa23.31■■□□□ 1.32
USH1C-202ENST00000318024 CDK11AQ9UQ88 783 aaPredicted RBP23.31■■□□□ 1.32
USH1C-202ENST00000318024 ABCA8O94911 1581 aa23.28■■□□□ 1.32
USH1C-202ENST00000318024 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
USH1C-202ENST00000318024 SUPT6HQ7KZ85 1726 aaKnown RBP23.27■■□□□ 1.31
USH1C-202ENST00000318024 FGD6Q6ZV73 1430 aa23.26■■□□□ 1.31
USH1C-202ENST00000318024 MYOM3Q5VTT5 1437 aa23.24■■□□□ 1.31
USH1C-202ENST00000318024 ATP10BO94823 1461 aa23.24■■□□□ 1.31
USH1C-202ENST00000318024 UACAQ9BZF9 1416 aa23.22■■□□□ 1.31
USH1C-202ENST00000318024 PLEKHD1A6NEE1 506 aa23.21■■□□□ 1.31
USH1C-202ENST00000318024 ARHGEF11O15085 1522 aa23.2■■□□□ 1.3
USH1C-202ENST00000318024 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
USH1C-202ENST00000318024 CLSPNQ9HAW4 1339 aa23.13■■□□□ 1.29
USH1C-202ENST00000318024 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.11■■□□□ 1.29
USH1C-202ENST00000318024 ZNF644Q9H582 1327 aaPredicted RBP23.1■■□□□ 1.29
USH1C-202ENST00000318024 KIF14Q15058 1648 aa23.09■■□□□ 1.29
USH1C-202ENST00000318024 ABCC2Q92887 1545 aa23.09■■□□□ 1.29
USH1C-202ENST00000318024 PTPN23Q9H3S7 1636 aa23.08■■□□□ 1.29
USH1C-202ENST00000318024 PTPRKQ15262 1439 aa23.08■■□□□ 1.28
USH1C-202ENST00000318024 DHX57Q6P158 1386 aaKnown RBP23.07■■□□□ 1.28
USH1C-202ENST00000318024 ZNF777Q9ULD5 760 aaPredicted RBP23.06■■□□□ 1.28
USH1C-202ENST00000318024 CHIC2Q9UKJ5 165 aa23.06■■□□□ 1.28
USH1C-202ENST00000318024 CFDP1Q9UEE9 299 aaPredicted RBP23.05■■□□□ 1.28
USH1C-202ENST00000318024 MIA2Q96PC5 1412 aa23.05■■□□□ 1.28
USH1C-202ENST00000318024 RAB3GAP2Q9H2M9 1393 aa23.05■■□□□ 1.28
USH1C-202ENST00000318024 KCNH8Q96L42 1107 aa23.04■■□□□ 1.28
USH1C-202ENST00000318024 SETD5Q9C0A6 1442 aa23.02■■□□□ 1.27
USH1C-202ENST00000318024 GPATCH8Q9UKJ3 1502 aaKnown RBP23.02■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms