RNA–Protein interactions for RNA: ENST00000314121.8

ZNF541-202, Transcript of zinc finger protein 541, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene ZNF541, Length 4,631 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-202ENST00000314121 TSPY10P0CW01 314 aa18.64■□□□□ 0.58
ZNF541-202ENST00000314121 CCNB3Q8WWL7 1395 aa18.64■□□□□ 0.57
ZNF541-202ENST00000314121 SIN3AQ96ST3 1273 aa18.63■□□□□ 0.57
ZNF541-202ENST00000314121 VPS8Q8N3P4 1428 aa18.62■□□□□ 0.57
ZNF541-202ENST00000314121 TIMELESSQ9UNS1 1208 aa18.61■□□□□ 0.57
ZNF541-202ENST00000314121 MROH2BQ7Z745 1585 aa18.6■□□□□ 0.57
ZNF541-202ENST00000314121 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.6■□□□□ 0.57
ZNF541-202ENST00000314121 EIF5BO60841 1220 aaKnown RBP18.6■□□□□ 0.57
ZNF541-202ENST00000314121 KDM2AQ9Y2K7 1162 aa18.6■□□□□ 0.57
ZNF541-202ENST00000314121 UPF2Q9HAU5 1272 aaKnown RBP18.59■□□□□ 0.57
ZNF541-202ENST00000314121 CCDC88BA6NC98 1476 aa18.54■□□□□ 0.56
ZNF541-202ENST00000314121 WDR43Q15061 677 aaKnown RBP eCLIP18.54■□□□□ 0.56
ZNF541-202ENST00000314121 BCL11AQ9H165 835 aa18.52■□□□□ 0.56
ZNF541-202ENST00000314121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.52■□□□□ 0.56
ZNF541-202ENST00000314121 PPP4R2Q9NY27 417 aa18.51■□□□□ 0.55
ZNF541-202ENST00000314121 CCER2I3L3R5 266 aa18.5■□□□□ 0.55
ZNF541-202ENST00000314121 FHAD1B1AJZ9 1412 aa18.49■□□□□ 0.55
ZNF541-202ENST00000314121 ABCC8Q09428 1581 aa18.49■□□□□ 0.55
ZNF541-202ENST00000314121 CHGAP10645 457 aaKnown RBP18.46■□□□□ 0.55
ZNF541-202ENST00000314121 KANK4Q5T7N3 995 aaPredicted RBP18.45■□□□□ 0.54
ZNF541-202ENST00000314121 HSP90AA1P07900 732 aaKnown RBP18.44■□□□□ 0.54
ZNF541-202ENST00000314121 SETD5Q9C0A6 1442 aa18.44■□□□□ 0.54
ZNF541-202ENST00000314121 CARMIL1Q5VZK9 1371 aa18.41■□□□□ 0.54
ZNF541-202ENST00000314121 ANP32BQ92688 251 aaKnown RBP18.41■□□□□ 0.54
ZNF541-202ENST00000314121 CHMP7Q8WUX9 453 aaPredicted RBP18.41■□□□□ 0.54
ZNF541-202ENST00000314121 DDRGK1Q96HY6 314 aa18.4■□□□□ 0.54
ZNF541-202ENST00000314121 CFDP1Q9UEE9 299 aaPredicted RBP18.39■□□□□ 0.53
ZNF541-202ENST00000314121 PLEKHD1A6NEE1 506 aa18.38■□□□□ 0.53
ZNF541-202ENST00000314121 CARD11Q9BXL7 1154 aa18.37■□□□□ 0.53
ZNF541-202ENST00000314121 SLC24A1O60721 1099 aa18.35■□□□□ 0.53
ZNF541-202ENST00000314121 RBM19Q9Y4C8 960 aaKnown RBP18.35■□□□□ 0.53
ZNF541-202ENST00000314121 CUX2O14529 1486 aa18.34■□□□□ 0.53
ZNF541-202ENST00000314121 RAB3GAP2Q9H2M9 1393 aa18.34■□□□□ 0.53
ZNF541-202ENST00000314121 RGL3Q3MIN7 710 aa18.34■□□□□ 0.53
ZNF541-202ENST00000314121 B4GALNT3Q6L9W6 998 aa18.33■□□□□ 0.53
ZNF541-202ENST00000314121 SENP3-EIF4A1A0A087X0R7 540 aa18.33■□□□□ 0.52
ZNF541-202ENST00000314121 WIZO95785 1651 aa18.3■□□□□ 0.52
ZNF541-202ENST00000314121 PPM1GO15355 546 aaPredicted RBP18.29■□□□□ 0.52
ZNF541-202ENST00000314121 ERICH6BQ5W0A0 696 aa18.29■□□□□ 0.52
ZNF541-202ENST00000314121 NOP58Q9Y2X3 529 aaKnown RBP18.29■□□□□ 0.52
ZNF541-202ENST00000314121 TOP2AP11388 1531 aaKnown RBP18.29■□□□□ 0.52
ZNF541-202ENST00000314121 PPP1R15AO75807 674 aaPredicted RBP18.28■□□□□ 0.52
ZNF541-202ENST00000314121 CDCA8Q53HL2 280 aa18.28■□□□□ 0.52
ZNF541-202ENST00000314121 TSHZ2Q9NRE2 1034 aa18.27■□□□□ 0.52
ZNF541-202ENST00000314121 BECN1Q14457 450 aa18.27■□□□□ 0.52
ZNF541-202ENST00000314121 HSPA5P11021 654 aaKnown RBP18.26■□□□□ 0.51
ZNF541-202ENST00000314121 KNSTRNQ9Y448 316 aa18.26■□□□□ 0.51
ZNF541-202ENST00000314121 ARHGAP35Q9NRY4 1499 aa18.26■□□□□ 0.51
ZNF541-202ENST00000314121 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
ZNF541-202ENST00000314121 NPM1P06748 294 aaKnown RBP eCLIP18.23■□□□□ 0.51
ZNF541-202ENST00000314121 DHX57Q6P158 1386 aaKnown RBP18.22■□□□□ 0.51
ZNF541-202ENST00000314121 ARXQ96QS3 562 aa18.21■□□□□ 0.51
ZNF541-202ENST00000314121 GLIPR1L2Q4G1C9 344 aa18.21■□□□□ 0.51
ZNF541-202ENST00000314121 RAPGEF2Q9Y4G8 1499 aa18.18■□□□□ 0.5
ZNF541-202ENST00000314121 ESF1Q9H501 851 aaKnown RBP18.17■□□□□ 0.5
ZNF541-202ENST00000314121 SMARCA2P51531 1590 aa18.17■□□□□ 0.5
ZNF541-202ENST00000314121 KCNH8Q96L42 1107 aa18.15■□□□□ 0.5
ZNF541-202ENST00000314121 RUSC2Q8N2Y8 1516 aa18.15■□□□□ 0.5
ZNF541-202ENST00000314121 LAS1LQ9Y4W2 734 aaKnown RBP18.15■□□□□ 0.5
ZNF541-202ENST00000314121 CFAP53Q96M91 514 aa18.13■□□□□ 0.49
ZNF541-202ENST00000314121 FMN1Q68DA7 1419 aa18.13■□□□□ 0.49
ZNF541-202ENST00000314121 DCAF11Q8TEB1 546 aa18.13■□□□□ 0.49
ZNF541-202ENST00000314121 MYH16Q9H6N6 1097 aa18.12■□□□□ 0.49
ZNF541-202ENST00000314121 MPHOSPH9Q99550 1183 aa18.11■□□□□ 0.49
ZNF541-202ENST00000314121 RGS3P49796 1198 aa18.1■□□□□ 0.49
ZNF541-202ENST00000314121 CC2D1BQ5T0F9 858 aaKnown RBP18.09■□□□□ 0.49
ZNF541-202ENST00000314121 TMF1P82094 1093 aa18.08■□□□□ 0.48
ZNF541-202ENST00000314121 DEKP35659 375 aaKnown RBP18.07■□□□□ 0.48
ZNF541-202ENST00000314121 FOXD1Q16676 465 aa18.07■□□□□ 0.48
ZNF541-202ENST00000314121 PKD2Q13563 968 aa18.05■□□□□ 0.48
ZNF541-202ENST00000314121 NEUROD2Q15784 382 aa18.04■□□□□ 0.48
ZNF541-202ENST00000314121 L3MBTL2Q969R5 705 aa18.04■□□□□ 0.48
ZNF541-202ENST00000314121 FTSJ3Q8IY81 847 aaKnown RBP18.03■□□□□ 0.48
ZNF541-202ENST00000314121 TRIM44Q96DX7 344 aaPredicted RBP18.03■□□□□ 0.48
ZNF541-202ENST00000314121 GOLGA6L22H0YM25 854 aa18.03■□□□□ 0.48
ZNF541-202ENST00000314121 RTN4Q9NQC3 1192 aaKnown RBP18.02■□□□□ 0.48
ZNF541-202ENST00000314121 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
ZNF541-202ENST00000314121 FRAT1Q92837 279 aaPredicted RBP18■□□□□ 0.47
ZNF541-202ENST00000314121 RCAN3Q9UKA8 241 aa18■□□□□ 0.47
ZNF541-202ENST00000314121 RALBP1Q15311 655 aa18■□□□□ 0.47
ZNF541-202ENST00000314121 NUDCQ9Y266 331 aa18■□□□□ 0.47
ZNF541-202ENST00000314121 SMARCA4P51532 1647 aa17.99■□□□□ 0.47
ZNF541-202ENST00000314121 TCERG1O14776 1098 aaKnown RBP17.99■□□□□ 0.47
ZNF541-202ENST00000314121 KTN1Q86UP2 1357 aaKnown RBP17.98■□□□□ 0.47
ZNF541-202ENST00000314121 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
ZNF541-202ENST00000314121 FHOD3Q2V2M9 1422 aa17.97■□□□□ 0.47
ZNF541-202ENST00000314121 MS4A1P11836 297 aa17.95■□□□□ 0.46
ZNF541-202ENST00000314121 TDRD9Q8NDG6 1382 aaKnown RBP17.95■□□□□ 0.46
ZNF541-202ENST00000314121 MAPK8IP3Q9UPT6 1336 aa17.94■□□□□ 0.46
ZNF541-202ENST00000314121 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
ZNF541-202ENST00000314121 NUP155O75694 1391 aa17.91■□□□□ 0.46
ZNF541-202ENST00000314121 IPO9Q96P70 1041 aaKnown RBP17.91■□□□□ 0.46
ZNF541-202ENST00000314121 TNNT2P45379 298 aaPredicted RBP17.9■□□□□ 0.46
ZNF541-202ENST00000314121 PRKRIP1Q9H875 184 aaPredicted RBP17.9■□□□□ 0.46
ZNF541-202ENST00000314121 ANKRD30AQ9BXX3 1397 aa17.89■□□□□ 0.45
ZNF541-202ENST00000314121 NCLP19338 710 aaKnown RBP17.89■□□□□ 0.45
ZNF541-202ENST00000314121 PDE3BQ13370 1112 aa17.89■□□□□ 0.45
ZNF541-202ENST00000314121 CHMP4BQ9H444 224 aaKnown RBP17.89■□□□□ 0.45
ZNF541-202ENST00000314121 NLRP13Q86W25 1043 aa17.89■□□□□ 0.45
ZNF541-202ENST00000314121 ROCK2O75116 1388 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms