RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 BECN1Q14457 450 aa17.03■□□□□ 0.32
COL3A1-201ENST00000304636 PPM1GO15355 546 aaPredicted RBP17.03■□□□□ 0.32
COL3A1-201ENST00000304636 ARXQ96QS3 562 aa17.02■□□□□ 0.32
COL3A1-201ENST00000304636 CEP164Q9UPV0 1460 aa17■□□□□ 0.31
COL3A1-201ENST00000304636 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
COL3A1-201ENST00000304636 KDM2AQ9Y2K7 1162 aa16.98■□□□□ 0.31
COL3A1-201ENST00000304636 WRNQ14191 1432 aaPredicted RBP eCLIP16.95■□□□□ 0.3
COL3A1-201ENST00000304636 RRP7BPQ9NSQ0 103 aa16.95■□□□□ 0.3
COL3A1-201ENST00000304636 TSPY4P0CV99 314 aa16.94■□□□□ 0.3
COL3A1-201ENST00000304636 TSPY10P0CW01 314 aa16.94■□□□□ 0.3
COL3A1-201ENST00000304636 RB1CC1Q8TDY2 1594 aa16.93■□□□□ 0.3
COL3A1-201ENST00000304636 TRIM44Q96DX7 344 aaPredicted RBP16.92■□□□□ 0.3
COL3A1-201ENST00000304636 CHGAP10645 457 aaKnown RBP16.91■□□□□ 0.3
COL3A1-201ENST00000304636 ERICH6BQ5W0A0 696 aa16.91■□□□□ 0.3
COL3A1-201ENST00000304636 CCER2I3L3R5 266 aa16.9■□□□□ 0.3
COL3A1-201ENST00000304636 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
COL3A1-201ENST00000304636 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.89■□□□□ 0.29
COL3A1-201ENST00000304636 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
COL3A1-201ENST00000304636 SIN3AQ96ST3 1273 aa16.87■□□□□ 0.29
COL3A1-201ENST00000304636 GOLGA6L22H0YM25 854 aa16.85■□□□□ 0.29
COL3A1-201ENST00000304636 MYH16Q9H6N6 1097 aa16.85■□□□□ 0.29
COL3A1-201ENST00000304636 LAS1LQ9Y4W2 734 aaKnown RBP16.85■□□□□ 0.29
COL3A1-201ENST00000304636 B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.28
COL3A1-201ENST00000304636 CCNB3Q8WWL7 1395 aa16.83■□□□□ 0.28
COL3A1-201ENST00000304636 DEKP35659 375 aaKnown RBP16.82■□□□□ 0.28
COL3A1-201ENST00000304636 KIF27Q86VH2 1401 aa16.81■□□□□ 0.28
COL3A1-201ENST00000304636 RTN4Q9NQC3 1192 aaKnown RBP16.79■□□□□ 0.28
COL3A1-201ENST00000304636 TSHZ2Q9NRE2 1034 aa16.77■□□□□ 0.28
COL3A1-201ENST00000304636 CARD11Q9BXL7 1154 aa16.77■□□□□ 0.27
COL3A1-201ENST00000304636 STAG3Q9UJ98 1225 aa16.77■□□□□ 0.27
COL3A1-201ENST00000304636 NCLP19338 710 aaKnown RBP16.76■□□□□ 0.27
COL3A1-201ENST00000304636 CDCA8Q53HL2 280 aa16.76■□□□□ 0.27
COL3A1-201ENST00000304636 SENP3-EIF4A1A0A087X0R7 540 aa16.75■□□□□ 0.27
COL3A1-201ENST00000304636 KNSTRNQ9Y448 316 aa16.74■□□□□ 0.27
COL3A1-201ENST00000304636 VPS8Q8N3P4 1428 aa16.72■□□□□ 0.27
COL3A1-201ENST00000304636 NAP1L5Q96NT1 182 aaPredicted RBP16.72■□□□□ 0.27
COL3A1-201ENST00000304636 SOGA1O94964 1423 aa16.7■□□□□ 0.26
COL3A1-201ENST00000304636 RGS3P49796 1198 aa16.7■□□□□ 0.26
COL3A1-201ENST00000304636 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
COL3A1-201ENST00000304636 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
COL3A1-201ENST00000304636 CFAP53Q96M91 514 aa16.69■□□□□ 0.26
COL3A1-201ENST00000304636 FHAD1B1AJZ9 1412 aa16.68■□□□□ 0.26
COL3A1-201ENST00000304636 ESF1Q9H501 851 aaKnown RBP16.68■□□□□ 0.26
COL3A1-201ENST00000304636 RGL3Q3MIN7 710 aa16.68■□□□□ 0.26
COL3A1-201ENST00000304636 NACADO15069 1562 aa16.67■□□□□ 0.26
COL3A1-201ENST00000304636 BAZ1AQ9NRL2 1556 aaPredicted RBP16.67■□□□□ 0.26
COL3A1-201ENST00000304636 FTSJ3Q8IY81 847 aaKnown RBP16.67■□□□□ 0.26
COL3A1-201ENST00000304636 BAZ1BQ9UIG0 1483 aaKnown RBP16.66■□□□□ 0.26
COL3A1-201ENST00000304636 PTMAP06454 111 aaKnown RBP16.66■□□□□ 0.26
COL3A1-201ENST00000304636 CFDP1Q9UEE9 299 aaPredicted RBP16.64■□□□□ 0.25
COL3A1-201ENST00000304636 L1TD1Q5T7N2 865 aaKnown RBP16.64■□□□□ 0.25
COL3A1-201ENST00000304636 PLEKHD1A6NEE1 506 aa16.63■□□□□ 0.25
COL3A1-201ENST00000304636 CASC1Q6TDU7 716 aa16.63■□□□□ 0.25
COL3A1-201ENST00000304636 HSPA5P11021 654 aaKnown RBP16.62■□□□□ 0.25
COL3A1-201ENST00000304636 CHMP7Q8WUX9 453 aaPredicted RBP16.61■□□□□ 0.25
COL3A1-201ENST00000304636 DNTTIP2Q5QJE6 756 aaKnown RBP16.6■□□□□ 0.25
COL3A1-201ENST00000304636 NPM1P06748 294 aaKnown RBP eCLIP16.59■□□□□ 0.25
COL3A1-201ENST00000304636 MS4A1P11836 297 aa16.59■□□□□ 0.25
COL3A1-201ENST00000304636 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
COL3A1-201ENST00000304636 TCERG1O14776 1098 aaKnown RBP16.57■□□□□ 0.24
COL3A1-201ENST00000304636 FRAT1Q92837 279 aaPredicted RBP16.57■□□□□ 0.24
COL3A1-201ENST00000304636 CC2D1BQ5T0F9 858 aaKnown RBP16.57■□□□□ 0.24
COL3A1-201ENST00000304636 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
COL3A1-201ENST00000304636 CHMP4BQ9H444 224 aaKnown RBP16.56■□□□□ 0.24
COL3A1-201ENST00000304636 HSP90AB1P08238 724 aaKnown RBP16.56■□□□□ 0.24
COL3A1-201ENST00000304636 NEUROD2Q15784 382 aa16.55■□□□□ 0.24
COL3A1-201ENST00000304636 KANK4Q5T7N3 995 aaPredicted RBP16.54■□□□□ 0.24
COL3A1-201ENST00000304636 IPO9Q96P70 1041 aaKnown RBP16.54■□□□□ 0.24
COL3A1-201ENST00000304636 ARHGAP35Q9NRY4 1499 aa16.54■□□□□ 0.24
COL3A1-201ENST00000304636 MAPK8IP3Q9UPT6 1336 aa16.53■□□□□ 0.24
COL3A1-201ENST00000304636 HSCBQ8IWL3 235 aa16.53■□□□□ 0.24
COL3A1-201ENST00000304636 TMF1P82094 1093 aa16.52■□□□□ 0.24
COL3A1-201ENST00000304636 NUDCQ9Y266 331 aa16.52■□□□□ 0.24
COL3A1-201ENST00000304636 PPP1R15AO75807 674 aaPredicted RBP16.51■□□□□ 0.23
COL3A1-201ENST00000304636 RCAN3Q9UKA8 241 aa16.5■□□□□ 0.23
COL3A1-201ENST00000304636 CCDC88BA6NC98 1476 aa16.5■□□□□ 0.23
COL3A1-201ENST00000304636 CARMIL1Q5VZK9 1371 aa16.49■□□□□ 0.23
COL3A1-201ENST00000304636 ABCC8Q09428 1581 aa16.48■□□□□ 0.23
COL3A1-201ENST00000304636 DCAF11Q8TEB1 546 aa16.47■□□□□ 0.23
COL3A1-201ENST00000304636 KTN1Q86UP2 1357 aaKnown RBP16.47■□□□□ 0.23
COL3A1-201ENST00000304636 ZRSR1Q15695 479 aaKnown RBP16.47■□□□□ 0.23
COL3A1-201ENST00000304636 MSNP26038 577 aaKnown RBP16.46■□□□□ 0.23
COL3A1-201ENST00000304636 RALBP1Q15311 655 aa16.46■□□□□ 0.23
COL3A1-201ENST00000304636 KCNH8Q96L42 1107 aa16.44■□□□□ 0.22
COL3A1-201ENST00000304636 MROH2BQ7Z745 1585 aa16.43■□□□□ 0.22
COL3A1-201ENST00000304636 CUX2O14529 1486 aa16.43■□□□□ 0.22
COL3A1-201ENST00000304636 PNNQ9H307 717 aaKnown RBP16.42■□□□□ 0.22
COL3A1-201ENST00000304636 PTMSP20962 102 aa16.42■□□□□ 0.22
COL3A1-201ENST00000304636 CFAP44Q96MT7 982 aa16.41■□□□□ 0.22
COL3A1-201ENST00000304636 USP35Q9P2H5 1018 aa16.41■□□□□ 0.22
COL3A1-201ENST00000304636 DHX57Q6P158 1386 aaKnown RBP16.41■□□□□ 0.22
COL3A1-201ENST00000304636 PLCB2Q00722 1185 aa16.4■□□□□ 0.22
COL3A1-201ENST00000304636 TPRNQ4KMQ1 711 aa16.39■□□□□ 0.21
COL3A1-201ENST00000304636 FANCIQ9NVI1 1328 aa16.39■□□□□ 0.21
COL3A1-201ENST00000304636 SPRYD3Q8NCJ5 442 aa16.38■□□□□ 0.21
COL3A1-201ENST00000304636 MPHOSPH9Q99550 1183 aa16.38■□□□□ 0.21
COL3A1-201ENST00000304636 GBP4Q96PP9 640 aa16.38■□□□□ 0.21
COL3A1-201ENST00000304636 CHAF1AQ13111 956 aaPredicted RBP16.38■□□□□ 0.21
COL3A1-201ENST00000304636 PDE3BQ13370 1112 aa16.37■□□□□ 0.21
COL3A1-201ENST00000304636 FMN1Q68DA7 1419 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms