RNA–Protein interactions for RNA: ENST00000301364.9

TSR1-201, Transcript of TSR1, ribosome maturation factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSR1, Length 5,188 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSR1-201ENST00000301364 VPS8Q8N3P4 1428 aa25.88■■□□□ 1.73
TSR1-201ENST00000301364 KDM2AQ9Y2K7 1162 aa25.88■■□□□ 1.73
TSR1-201ENST00000301364 IRX6P78412 446 aaPredicted RBP25.87■■□□□ 1.73
TSR1-201ENST00000301364 TIMELESSQ9UNS1 1208 aa25.86■■□□□ 1.73
TSR1-201ENST00000301364 UPF2Q9HAU5 1272 aaKnown RBP25.85■■□□□ 1.73
TSR1-201ENST00000301364 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.85■■□□□ 1.732e-6■■■■□ 19.8
TSR1-201ENST00000301364 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
TSR1-201ENST00000301364 WDR43Q15061 677 aaKnown RBP eCLIP25.84■■□□□ 1.732e-29■□□□□ 9
TSR1-201ENST00000301364 FHAD1B1AJZ9 1412 aa25.83■■□□□ 1.73
TSR1-201ENST00000301364 CHMP7Q8WUX9 453 aaPredicted RBP25.82■■□□□ 1.72
TSR1-201ENST00000301364 CHGAP10645 457 aaKnown RBP25.8■■□□□ 1.72
TSR1-201ENST00000301364 SIN3AQ96ST3 1273 aa25.8■■□□□ 1.72
TSR1-201ENST00000301364 BCL11AQ9H165 835 aa25.74■■□□□ 1.71
TSR1-201ENST00000301364 ABCC8Q09428 1581 aa25.73■■□□□ 1.71
TSR1-201ENST00000301364 SUPT16HQ9Y5B9 1047 aaKnown RBP25.72■■□□□ 1.71
TSR1-201ENST00000301364 PLEKHD1A6NEE1 506 aa25.72■■□□□ 1.71
TSR1-201ENST00000301364 NBR1Q14596 966 aa25.71■■□□□ 1.71
TSR1-201ENST00000301364 CARMIL1Q5VZK9 1371 aa25.7■■□□□ 1.71
TSR1-201ENST00000301364 ANP32EQ9BTT0 268 aa25.68■■□□□ 1.7
TSR1-201ENST00000301364 CFDP1Q9UEE9 299 aaPredicted RBP25.67■■□□□ 1.7
TSR1-201ENST00000301364 SLC24A1O60721 1099 aa25.66■■□□□ 1.7
TSR1-201ENST00000301364 NPM1P06748 294 aaKnown RBP eCLIP25.66■■□□□ 1.7
TSR1-201ENST00000301364 SETD5Q9C0A6 1442 aa25.64■■□□□ 1.7
TSR1-201ENST00000301364 HSP90AA1P07900 732 aaKnown RBP25.64■■□□□ 1.7
TSR1-201ENST00000301364 CCER2I3L3R5 266 aa25.64■■□□□ 1.69
TSR1-201ENST00000301364 CUX2O14529 1486 aa25.63■■□□□ 1.69
TSR1-201ENST00000301364 PPP4R2Q9NY27 417 aa25.61■■□□□ 1.69
TSR1-201ENST00000301364 STAG3Q9UJ98 1225 aa25.6■■□□□ 1.69
TSR1-201ENST00000301364 TOP2AP11388 1531 aaKnown RBP25.6■■□□□ 1.69
TSR1-201ENST00000301364 ANP32BQ92688 251 aaKnown RBP25.6■■□□□ 1.69
TSR1-201ENST00000301364 KANK4Q5T7N3 995 aaPredicted RBP25.58■■□□□ 1.69
TSR1-201ENST00000301364 CARD11Q9BXL7 1154 aa25.57■■□□□ 1.68
TSR1-201ENST00000301364 ESF1Q9H501 851 aaKnown RBP25.56■■□□□ 1.68
TSR1-201ENST00000301364 DDRGK1Q96HY6 314 aa25.55■■□□□ 1.68
TSR1-201ENST00000301364 WIZO95785 1651 aa25.54■■□□□ 1.68
TSR1-201ENST00000301364 CDCA8Q53HL2 280 aa25.53■■□□□ 1.68
TSR1-201ENST00000301364 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
TSR1-201ENST00000301364 RGL3Q3MIN7 710 aa25.51■■□□□ 1.67
TSR1-201ENST00000301364 ARHGAP35Q9NRY4 1499 aa25.49■■□□□ 1.67
TSR1-201ENST00000301364 EIF5BO60841 1220 aaKnown RBP25.46■■□□□ 1.67
TSR1-201ENST00000301364 RAB3GAP2Q9H2M9 1393 aa25.45■■□□□ 1.67
TSR1-201ENST00000301364 KNSTRNQ9Y448 316 aa25.45■■□□□ 1.66
TSR1-201ENST00000301364 KCNH8Q96L42 1107 aa25.4■■□□□ 1.66
TSR1-201ENST00000301364 BECN1Q14457 450 aa25.39■■□□□ 1.65
TSR1-201ENST00000301364 HSPA5P11021 654 aaKnown RBP25.34■■□□□ 1.65
TSR1-201ENST00000301364 ERICH6BQ5W0A0 696 aa25.34■■□□□ 1.65
TSR1-201ENST00000301364 FMN1Q68DA7 1419 aa25.33■■□□□ 1.65
TSR1-201ENST00000301364 PPM1GO15355 546 aaPredicted RBP25.33■■□□□ 1.65
TSR1-201ENST00000301364 CFAP53Q96M91 514 aa25.32■■□□□ 1.64
TSR1-201ENST00000301364 PPP1R15AO75807 674 aaPredicted RBP25.32■■□□□ 1.64
TSR1-201ENST00000301364 SENP3-EIF4A1A0A087X0R7 540 aa25.3■■□□□ 1.64
TSR1-201ENST00000301364 MYH16Q9H6N6 1097 aa25.3■■□□□ 1.64
TSR1-201ENST00000301364 B4GALNT3Q6L9W6 998 aa25.29■■□□□ 1.64
TSR1-201ENST00000301364 RAPGEF2Q9Y4G8 1499 aa25.28■■□□□ 1.64
TSR1-201ENST00000301364 NOP58Q9Y2X3 529 aaKnown RBP25.27■■□□□ 1.64
TSR1-201ENST00000301364 EIF4G1Q04637 1599 aaKnown RBP25.26■■□□□ 1.63
TSR1-201ENST00000301364 RBM19Q9Y4C8 960 aaKnown RBP25.24■■□□□ 1.63
TSR1-201ENST00000301364 DCAF11Q8TEB1 546 aa25.22■■□□□ 1.63
TSR1-201ENST00000301364 DHX57Q6P158 1386 aaKnown RBP25.22■■□□□ 1.63
TSR1-201ENST00000301364 TMF1P82094 1093 aa25.2■■□□□ 1.63
TSR1-201ENST00000301364 SMARCA4P51532 1647 aa25.2■■□□□ 1.63
TSR1-201ENST00000301364 MPHOSPH9Q99550 1183 aa25.18■■□□□ 1.62
TSR1-201ENST00000301364 RUSC2Q8N2Y8 1516 aa25.18■■□□□ 1.62
TSR1-201ENST00000301364 GLIPR1L2Q4G1C9 344 aa25.17■■□□□ 1.62
TSR1-201ENST00000301364 ARXQ96QS3 562 aa25.16■■□□□ 1.62
TSR1-201ENST00000301364 CC2D1BQ5T0F9 858 aaKnown RBP25.16■■□□□ 1.62
TSR1-201ENST00000301364 ATAD2BQ9ULI0 1458 aa25.15■■□□□ 1.62
TSR1-201ENST00000301364 PKD2Q13563 968 aa25.13■■□□□ 1.61
TSR1-201ENST00000301364 FTSJ3Q8IY81 847 aaKnown RBP25.11■■□□□ 1.61
TSR1-201ENST00000301364 TSHZ2Q9NRE2 1034 aa25.09■■□□□ 1.61
TSR1-201ENST00000301364 NUDCQ9Y266 331 aa25.09■■□□□ 1.61
TSR1-201ENST00000301364 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.61
TSR1-201ENST00000301364 FOXD1Q16676 465 aa25.07■■□□□ 1.6
TSR1-201ENST00000301364 GOLGA6L22H0YM25 854 aa25.07■■□□□ 1.6
TSR1-201ENST00000301364 RGS3P49796 1198 aa25.07■■□□□ 1.6
TSR1-201ENST00000301364 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
TSR1-201ENST00000301364 NEUROD2Q15784 382 aa25.06■■□□□ 1.6
TSR1-201ENST00000301364 TDRD9Q8NDG6 1382 aaKnown RBP25.06■■□□□ 1.6
TSR1-201ENST00000301364 FHOD3Q2V2M9 1422 aa25.05■■□□□ 1.6
TSR1-201ENST00000301364 MS4A1P11836 297 aa25.04■■□□□ 1.6
TSR1-201ENST00000301364 RALBP1Q15311 655 aa25.04■■□□□ 1.6
TSR1-201ENST00000301364 LAS1LQ9Y4W2 734 aaKnown RBP25.04■■□□□ 1.6
TSR1-201ENST00000301364 ERCC6Q03468 1493 aa25.04■■□□□ 1.6
TSR1-201ENST00000301364 MAPK8IP3Q9UPT6 1336 aa25.04■■□□□ 1.6
TSR1-201ENST00000301364 KTN1Q86UP2 1357 aaKnown RBP25.04■■□□□ 1.6
TSR1-201ENST00000301364 L3MBTL2Q969R5 705 aa25.02■■□□□ 1.6
TSR1-201ENST00000301364 ANKRD30AQ9BXX3 1397 aa25■■□□□ 1.59
TSR1-201ENST00000301364 FRAT1Q92837 279 aaPredicted RBP25■■□□□ 1.59
TSR1-201ENST00000301364 CARMIL2Q6F5E8 1435 aa25■■□□□ 1.59
TSR1-201ENST00000301364 TRIM44Q96DX7 344 aaPredicted RBP24.99■■□□□ 1.59
TSR1-201ENST00000301364 CHMP4BQ9H444 224 aaKnown RBP24.98■■□□□ 1.59
TSR1-201ENST00000301364 KANK1Q14678 1352 aa24.97■■□□□ 1.59
TSR1-201ENST00000301364 NUP155O75694 1391 aa24.96■■□□□ 1.59
TSR1-201ENST00000301364 RCAN3Q9UKA8 241 aa24.95■■□□□ 1.58
TSR1-201ENST00000301364 PLPPR3Q6T4P5 718 aa24.93■■□□□ 1.58
TSR1-201ENST00000301364 ROCK2O75116 1388 aaKnown RBP24.92■■□□□ 1.58
TSR1-201ENST00000301364 NCLP19338 710 aaKnown RBP24.92■■□□□ 1.58
TSR1-201ENST00000301364 PNNQ9H307 717 aaKnown RBP24.91■■□□□ 1.58
TSR1-201ENST00000301364 SENP3Q9H4L4 574 aaPredicted RBP24.91■■□□□ 1.58
TSR1-201ENST00000301364 TCERG1O14776 1098 aaKnown RBP24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms