RNA–Protein interactions for RNA: ENST00000300413.9

SNRPD1-201, Transcript of small nuclear ribonucleoprotein D1 polypeptide, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRPD1, Length 4,909 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPD1-201ENST00000300413 TOP2BQ02880 1626 aa11.84□□□□□ -0.51
SNRPD1-201ENST00000300413 TOPBP1Q92547 1522 aa11.84□□□□□ -0.51
SNRPD1-201ENST00000300413 NESP48681 1621 aa11.82□□□□□ -0.52
SNRPD1-201ENST00000300413 IGF1RP08069 1367 aa11.82□□□□□ -0.52
SNRPD1-201ENST00000300413 CFDP1Q9UEE9 299 aaPredicted RBP11.81□□□□□ -0.52
SNRPD1-201ENST00000300413 RAD54L2Q9Y4B4 1467 aa11.79□□□□□ -0.52
SNRPD1-201ENST00000300413 CCNB3Q8WWL7 1395 aa11.79□□□□□ -0.52
SNRPD1-201ENST00000300413 ERICH3Q5RHP9 1530 aa11.78□□□□□ -0.52
SNRPD1-201ENST00000300413 JPH4Q96JJ6 628 aa11.78□□□□□ -0.52
SNRPD1-201ENST00000300413 KCNH8Q96L42 1107 aa11.77□□□□□ -0.53
SNRPD1-201ENST00000300413 POLA1P09884 1462 aaPredicted RBP11.76□□□□□ -0.53
SNRPD1-201ENST00000300413 CUX1P39880 1505 aa11.76□□□□□ -0.53
SNRPD1-201ENST00000300413 SYNJ1O43426 1573 aa11.76□□□□□ -0.53
SNRPD1-201ENST00000300413 OSCARQ8IYS5 282 aa11.76□□□□□ -0.53
SNRPD1-201ENST00000300413 NEUROD1Q13562 356 aa11.75□□□□□ -0.53
SNRPD1-201ENST00000300413 KIF21BO75037 1637 aa11.74□□□□□ -0.53
SNRPD1-201ENST00000300413 ABCA10Q8WWZ4 1543 aa11.73□□□□□ -0.53
SNRPD1-201ENST00000300413 ARHGAP35Q9NRY4 1499 aa11.72□□□□□ -0.53
SNRPD1-201ENST00000300413 DNAJC5BQ9UF47 199 aa11.71□□□□□ -0.53
SNRPD1-201ENST00000300413 TONSLQ96HA7 1378 aa11.71□□□□□ -0.53
SNRPD1-201ENST00000300413 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.547e-8■■■■□ 19.3
SNRPD1-201ENST00000300413 CCDC18Q5T9S5 1454 aa11.71□□□□□ -0.54
SNRPD1-201ENST00000300413 POLR3GLQ9BT43 218 aa11.7□□□□□ -0.54
SNRPD1-201ENST00000300413 PTPRGP23470 1445 aa11.7□□□□□ -0.54
SNRPD1-201ENST00000300413 RUSC2Q8N2Y8 1516 aa11.7□□□□□ -0.54
SNRPD1-201ENST00000300413 CHIC2Q9UKJ5 165 aa11.69□□□□□ -0.54
SNRPD1-201ENST00000300413 FHOD3Q2V2M9 1422 aa11.68□□□□□ -0.54
SNRPD1-201ENST00000300413 RSPH4AQ5TD94 716 aa11.68□□□□□ -0.54
SNRPD1-201ENST00000300413 STAG3Q9UJ98 1225 aa11.66□□□□□ -0.54
SNRPD1-201ENST00000300413 EFCAB2Q5VUJ9 269 aa11.66□□□□□ -0.54
SNRPD1-201ENST00000300413 EFCAB5A4FU69 1503 aa11.66□□□□□ -0.54
SNRPD1-201ENST00000300413 PRXQ9BXM0 1461 aa11.66□□□□□ -0.54
SNRPD1-201ENST00000300413 BIVM-ERCC5R4GMW8 1640 aa11.65□□□□□ -0.55
SNRPD1-201ENST00000300413 CUL7Q14999 1698 aa11.64□□□□□ -0.55
SNRPD1-201ENST00000300413 CLSPNQ9HAW4 1339 aa11.64□□□□□ -0.55
SNRPD1-201ENST00000300413 ZNF326Q5BKZ1 582 aaKnown RBP11.64□□□□□ -0.55
SNRPD1-201ENST00000300413 MAGI1Q96QZ7 1491 aaPredicted RBP11.64□□□□□ -0.55
SNRPD1-201ENST00000300413 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.62□□□□□ -0.551e-12■■■□□ 17.7
SNRPD1-201ENST00000300413 NEFLP07196 543 aa11.62□□□□□ -0.55
SNRPD1-201ENST00000300413 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
SNRPD1-201ENST00000300413 SNAPC4Q5SXM2 1469 aa11.61□□□□□ -0.55
SNRPD1-201ENST00000300413 BCANQ96GW7 911 aa11.61□□□□□ -0.55
SNRPD1-201ENST00000300413 URB2Q14146 1524 aaKnown RBP11.61□□□□□ -0.55
SNRPD1-201ENST00000300413 KANK1Q14678 1352 aa11.61□□□□□ -0.55
SNRPD1-201ENST00000300413 RRP7BPQ9NSQ0 103 aa11.61□□□□□ -0.55
SNRPD1-201ENST00000300413 SYNJ2O15056 1496 aa11.59□□□□□ -0.55
SNRPD1-201ENST00000300413 KIAA0586Q9BVV6 1533 aa11.58□□□□□ -0.56
SNRPD1-201ENST00000300413 CHGAP10645 457 aaKnown RBP11.57□□□□□ -0.56
SNRPD1-201ENST00000300413 ZNF316A6NFI3 1004 aaPredicted RBP11.57□□□□□ -0.56
SNRPD1-201ENST00000300413 CASKIN1Q8WXD9 1431 aa11.57□□□□□ -0.56
SNRPD1-201ENST00000300413 ANKRD30AQ9BXX3 1397 aa11.56□□□□□ -0.56
SNRPD1-201ENST00000300413 DIEXFQ68CQ4 756 aaKnown RBP11.55□□□□□ -0.56
SNRPD1-201ENST00000300413 FYCO1Q9BQS8 1478 aa11.54□□□□□ -0.56
SNRPD1-201ENST00000300413 ANP32CO43423 234 aa11.54□□□□□ -0.56
SNRPD1-201ENST00000300413 TIMELESSQ9UNS1 1208 aa11.54□□□□□ -0.56
SNRPD1-201ENST00000300413 PRG4Q92954 1404 aaPredicted RBP11.53□□□□□ -0.56
SNRPD1-201ENST00000300413 SETD5Q9C0A6 1442 aa11.53□□□□□ -0.56
SNRPD1-201ENST00000300413 KANK4Q5T7N3 995 aaPredicted RBP11.52□□□□□ -0.56
SNRPD1-201ENST00000300413 TRHP20396 242 aaPredicted RBP11.52□□□□□ -0.57
SNRPD1-201ENST00000300413 ARID4BQ4LE39 1312 aaPredicted RBP11.52□□□□□ -0.57
SNRPD1-201ENST00000300413 PRDM2Q13029 1718 aa11.51□□□□□ -0.57
SNRPD1-201ENST00000300413 GRIN2AQ12879 1464 aa11.5□□□□□ -0.57
SNRPD1-201ENST00000300413 IQGAP2Q13576 1575 aa11.5□□□□□ -0.57
SNRPD1-201ENST00000300413 WDR97A6NE52 1622 aa11.49□□□□□ -0.57
SNRPD1-201ENST00000300413 SLC24A1O60721 1099 aa11.49□□□□□ -0.57
SNRPD1-201ENST00000300413 HDGFP51858 240 aaKnown RBP11.48□□□□□ -0.57
SNRPD1-201ENST00000300413 WDR62O43379 1518 aa11.47□□□□□ -0.57
SNRPD1-201ENST00000300413 SPAG9O60271 1321 aaKnown RBP11.47□□□□□ -0.57
SNRPD1-201ENST00000300413 HECW1Q76N89 1606 aa11.46□□□□□ -0.57
SNRPD1-201ENST00000300413 PPP1R15AO75807 674 aaPredicted RBP11.46□□□□□ -0.58
SNRPD1-201ENST00000300413 MYOM3Q5VTT5 1437 aa11.45□□□□□ -0.58
SNRPD1-201ENST00000300413 CYB5RLQ6IPT4 315 aa11.45□□□□□ -0.58
SNRPD1-201ENST00000300413 YTHDC1Q96MU7 727 aaKnown RBP11.45□□□□□ -0.58
SNRPD1-201ENST00000300413 CDCA8Q53HL2 280 aa11.44□□□□□ -0.58
SNRPD1-201ENST00000300413 NEFMP07197 916 aa11.43□□□□□ -0.58
SNRPD1-201ENST00000300413 LRRC9Q6ZRR7 1453 aa11.43□□□□□ -0.58
SNRPD1-201ENST00000300413 EHBP1L1Q8N3D4 1523 aa11.43□□□□□ -0.58
SNRPD1-201ENST00000300413 EIF4G2P78344 907 aaKnown RBP eCLIP11.43□□□□□ -0.58
SNRPD1-201ENST00000300413 PLEKHH2Q8IVE3 1493 aa11.42□□□□□ -0.58
SNRPD1-201ENST00000300413 ARAP1Q96P48 1450 aa11.42□□□□□ -0.58
SNRPD1-201ENST00000300413 UACAQ9BZF9 1416 aa11.41□□□□□ -0.58
SNRPD1-201ENST00000300413 ZNF608Q9ULD9 1512 aaPredicted RBP11.4□□□□□ -0.58
SNRPD1-201ENST00000300413 KIF21AQ7Z4S6 1674 aa11.39□□□□□ -0.59
SNRPD1-201ENST00000300413 TROQ12816 1431 aaPredicted RBP11.39□□□□□ -0.59
SNRPD1-201ENST00000300413 KDM2AQ9Y2K7 1162 aa11.39□□□□□ -0.59
SNRPD1-201ENST00000300413 FGD6Q6ZV73 1430 aa11.39□□□□□ -0.59
SNRPD1-201ENST00000300413 MIA2Q96PC5 1412 aa11.38□□□□□ -0.59
SNRPD1-201ENST00000300413 MAP3K1Q13233 1512 aa11.38□□□□□ -0.59
SNRPD1-201ENST00000300413 HNRNPMP52272 730 aaKnown RBP eCLIP11.38□□□□□ -0.59
SNRPD1-201ENST00000300413 NUP155O75694 1391 aa11.37□□□□□ -0.59
SNRPD1-201ENST00000300413 NCOA2Q15596 1464 aa11.37□□□□□ -0.59
SNRPD1-201ENST00000300413 RAB3GAP2Q9H2M9 1393 aa11.37□□□□□ -0.59
SNRPD1-201ENST00000300413 PLPPR3Q6T4P5 718 aa11.37□□□□□ -0.59
SNRPD1-201ENST00000300413 CNGB1Q14028 1251 aaPredicted RBP11.36□□□□□ -0.59
SNRPD1-201ENST00000300413 ADAMTS12P58397 1594 aa11.35□□□□□ -0.59
SNRPD1-201ENST00000300413 GGT6Q6P531 493 aa11.34□□□□□ -0.59
SNRPD1-201ENST00000300413 PKD2Q13563 968 aa11.34□□□□□ -0.59
SNRPD1-201ENST00000300413 KIF3BO15066 747 aa11.34□□□□□ -0.59
SNRPD1-201ENST00000300413 TIAM1Q13009 1591 aa11.33□□□□□ -0.6
SNRPD1-201ENST00000300413 FAM69CQ0P6D2 419 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms