RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 HNRNPUQ00839 825 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL6A3-201ENST00000295550 FHAD1B1AJZ9 1412 aa13.17□□□□□ -0.3
COL6A3-201ENST00000295550 ARID3CA6NKF2 412 aa13.17□□□□□ -0.3
COL6A3-201ENST00000295550 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
COL6A3-201ENST00000295550 FBLN2P98095 1184 aa13.16□□□□□ -0.3
COL6A3-201ENST00000295550 CCNB3Q8WWL7 1395 aa13.15□□□□□ -0.31
COL6A3-201ENST00000295550 CDK11BP21127 795 aaKnown RBP13.14□□□□□ -0.31
COL6A3-201ENST00000295550 TRIM44Q96DX7 344 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-201ENST00000295550 ZNF777Q9ULD5 760 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-201ENST00000295550 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-201ENST00000295550 ARHGAP35Q9NRY4 1499 aa13.08□□□□□ -0.32
COL6A3-201ENST00000295550 FAM9BQ8IZU0 186 aa13.07□□□□□ -0.32
COL6A3-201ENST00000295550 BECN1Q14457 450 aa13.07□□□□□ -0.32
COL6A3-201ENST00000295550 MRS2Q9HD23 443 aa13.06□□□□□ -0.32
COL6A3-201ENST00000295550 CHIC2Q9UKJ5 165 aa13.06□□□□□ -0.32
COL6A3-201ENST00000295550 DDRGK1Q96HY6 314 aa13.06□□□□□ -0.32
COL6A3-201ENST00000295550 NAP1L5Q96NT1 182 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-201ENST00000295550 CUX2O14529 1486 aa13.05□□□□□ -0.32
COL6A3-201ENST00000295550 EIF4G2P78344 907 aaKnown RBP eCLIP13.05□□□□□ -0.32
COL6A3-201ENST00000295550 ANP32EQ9BTT0 268 aa13.04□□□□□ -0.32
COL6A3-201ENST00000295550 PTMAP06454 111 aaKnown RBP13.03□□□□□ -0.32
COL6A3-201ENST00000295550 SETD5Q9C0A6 1442 aa13.03□□□□□ -0.32
COL6A3-201ENST00000295550 MYH16Q9H6N6 1097 aa13.01□□□□□ -0.33
COL6A3-201ENST00000295550 ERICH6BQ5W0A0 696 aa13.01□□□□□ -0.33
COL6A3-201ENST00000295550 GOLGA6L22H0YM25 854 aa13.01□□□□□ -0.33
COL6A3-201ENST00000295550 KIF21BO75037 1637 aa13.01□□□□□ -0.33
COL6A3-201ENST00000295550 NCLP19338 710 aaKnown RBP13□□□□□ -0.33
COL6A3-201ENST00000295550 DNTTIP2Q5QJE6 756 aaKnown RBP12.99□□□□□ -0.33
COL6A3-201ENST00000295550 TMC1Q8TDI8 760 aa12.99□□□□□ -0.33
COL6A3-201ENST00000295550 CARMIL1Q5VZK9 1371 aa12.99□□□□□ -0.33
COL6A3-201ENST00000295550 TIMELESSQ9UNS1 1208 aa12.99□□□□□ -0.33
COL6A3-201ENST00000295550 RRP7BPQ9NSQ0 103 aa12.98□□□□□ -0.33
COL6A3-201ENST00000295550 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
COL6A3-201ENST00000295550 IRX6P78412 446 aaPredicted RBP12.97□□□□□ -0.33
COL6A3-201ENST00000295550 SUPT16HQ9Y5B9 1047 aaKnown RBP12.97□□□□□ -0.33
COL6A3-201ENST00000295550 RAPGEF2Q9Y4G8 1499 aa12.97□□□□□ -0.33
COL6A3-201ENST00000295550 EIF4G1Q04637 1599 aaKnown RBP12.97□□□□□ -0.33
COL6A3-201ENST00000295550 SALL2Q9Y467 1007 aaPredicted RBP12.96□□□□□ -0.34
COL6A3-201ENST00000295550 HIRIP3Q9BW71 556 aaPredicted RBP12.96□□□□□ -0.34
COL6A3-201ENST00000295550 FMN1Q68DA7 1419 aa12.94□□□□□ -0.34
COL6A3-201ENST00000295550 ZRSR1Q15695 479 aaKnown RBP12.92□□□□□ -0.34
COL6A3-201ENST00000295550 TSPY4P0CV99 314 aa12.92□□□□□ -0.34
COL6A3-201ENST00000295550 TSPY10P0CW01 314 aa12.92□□□□□ -0.34
COL6A3-201ENST00000295550 RAB3GAP2Q9H2M9 1393 aa12.91□□□□□ -0.34
COL6A3-201ENST00000295550 CCER2I3L3R5 266 aa12.91□□□□□ -0.34
COL6A3-201ENST00000295550 ATAD2BQ9ULI0 1458 aa12.9□□□□□ -0.34
COL6A3-201ENST00000295550 WDR43Q15061 677 aaKnown RBP eCLIP12.9□□□□□ -0.34
COL6A3-201ENST00000295550 AMER1Q5JTC6 1135 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-201ENST00000295550 CHMP7Q8WUX9 453 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-201ENST00000295550 SIN3AQ96ST3 1273 aa12.87□□□□□ -0.35
COL6A3-201ENST00000295550 KANK4Q5T7N3 995 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-201ENST00000295550 ERICH3Q5RHP9 1530 aa12.86□□□□□ -0.35
COL6A3-201ENST00000295550 LAS1LQ9Y4W2 734 aaKnown RBP12.86□□□□□ -0.35
COL6A3-201ENST00000295550 RUSC2Q8N2Y8 1516 aa12.85□□□□□ -0.35
COL6A3-201ENST00000295550 TPRNQ4KMQ1 711 aa12.84□□□□□ -0.35
COL6A3-201ENST00000295550 PPP4R2Q9NY27 417 aa12.84□□□□□ -0.35
COL6A3-201ENST00000295550 GOLGA6L6A8MZA4 724 aa12.84□□□□□ -0.35
COL6A3-201ENST00000295550 KDM2AQ9Y2K7 1162 aa12.84□□□□□ -0.35
COL6A3-201ENST00000295550 CHAF1AQ13111 956 aaPredicted RBP12.83□□□□□ -0.35
COL6A3-201ENST00000295550 CFDP1Q9UEE9 299 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-201ENST00000295550 PPM1GO15355 546 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-201ENST00000295550 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.83□□□□□ -0.36
COL6A3-201ENST00000295550 CASC1Q6TDU7 716 aa12.83□□□□□ -0.36
COL6A3-201ENST00000295550 NOP58Q9Y2X3 529 aaKnown RBP12.82□□□□□ -0.36
COL6A3-201ENST00000295550 DHX57Q6P158 1386 aaKnown RBP12.81□□□□□ -0.36
COL6A3-201ENST00000295550 SYNJ1O43426 1573 aa12.81□□□□□ -0.36
COL6A3-201ENST00000295550 PLEKHD1A6NEE1 506 aa12.8□□□□□ -0.36
COL6A3-201ENST00000295550 CUX1P39880 1505 aa12.79□□□□□ -0.36
COL6A3-201ENST00000295550 TOP2BQ02880 1626 aa12.78□□□□□ -0.36
COL6A3-201ENST00000295550 CARD11Q9BXL7 1154 aa12.77□□□□□ -0.37
COL6A3-201ENST00000295550 CDCA8Q53HL2 280 aa12.77□□□□□ -0.37
COL6A3-201ENST00000295550 ERCC6Q03468 1493 aa12.76□□□□□ -0.37
COL6A3-201ENST00000295550 FHOD3Q2V2M9 1422 aa12.76□□□□□ -0.37
COL6A3-201ENST00000295550 STAG3Q9UJ98 1225 aa12.76□□□□□ -0.37
COL6A3-201ENST00000295550 NRDCO43847 1150 aa12.75□□□□□ -0.37
COL6A3-201ENST00000295550 CCDC18Q5T9S5 1454 aa12.75□□□□□ -0.37
COL6A3-201ENST00000295550 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
COL6A3-201ENST00000295550 ESF1Q9H501 851 aaKnown RBP12.74□□□□□ -0.37
COL6A3-201ENST00000295550 MSNP26038 577 aaKnown RBP12.73□□□□□ -0.37
COL6A3-201ENST00000295550 CADPSQ9ULU8 1353 aa12.73□□□□□ -0.37
COL6A3-201ENST00000295550 DEKP35659 375 aaKnown RBP12.73□□□□□ -0.37
COL6A3-201ENST00000295550 CHGAP10645 457 aaKnown RBP12.73□□□□□ -0.37
COL6A3-201ENST00000295550 FTSJ3Q8IY81 847 aaKnown RBP12.73□□□□□ -0.37
COL6A3-201ENST00000295550 ARID4BQ4LE39 1312 aaPredicted RBP12.72□□□□□ -0.37
COL6A3-201ENST00000295550 KNSTRNQ9Y448 316 aa12.72□□□□□ -0.37
COL6A3-201ENST00000295550 PLCB2Q00722 1185 aa12.72□□□□□ -0.37
COL6A3-201ENST00000295550 L1TD1Q5T7N2 865 aaKnown RBP12.71□□□□□ -0.37
COL6A3-201ENST00000295550 HSPA5P11021 654 aaKnown RBP12.71□□□□□ -0.38
COL6A3-201ENST00000295550 TULP1O00294 542 aaPredicted RBP12.71□□□□□ -0.38
COL6A3-201ENST00000295550 HSP90AB1P08238 724 aaKnown RBP12.7□□□□□ -0.38
COL6A3-201ENST00000295550 UNC13AQ9UPW8 1703 aa12.69□□□□□ -0.38
COL6A3-201ENST00000295550 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-201ENST00000295550 FGD5Q6ZNL6 1462 aa12.67□□□□□ -0.38
COL6A3-201ENST00000295550 FANCD2Q9BXW9 1451 aa12.67□□□□□ -0.38
COL6A3-201ENST00000295550 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
COL6A3-201ENST00000295550 PPP1R15AO75807 674 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-201ENST00000295550 ARID3AQ99856 593 aa12.66□□□□□ -0.38
COL6A3-201ENST00000295550 KTN1Q86UP2 1357 aaKnown RBP12.66□□□□□ -0.38
COL6A3-201ENST00000295550 RBM19Q9Y4C8 960 aaKnown RBP12.66□□□□□ -0.38
COL6A3-201ENST00000295550 CARMIL2Q6F5E8 1435 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms