RNA–Protein interactions for RNA: ENST00000254719.9

RPA1-201, Transcript of replication protein A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPA1, Length 4,340 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-201ENST00000254719 CUL7Q14999 1698 aa14.06□□□□□ -0.16
RPA1-201ENST00000254719 CARMIL1Q5VZK9 1371 aa14.03□□□□□ -0.16
RPA1-201ENST00000254719 MAGI3Q5TCQ9 1506 aa14.03□□□□□ -0.16
RPA1-201ENST00000254719 PBRM1Q86U86 1689 aa14.02□□□□□ -0.16
RPA1-201ENST00000254719 PHLDB1Q86UU1 1377 aa14.02□□□□□ -0.17
RPA1-201ENST00000254719 LRRC9Q6ZRR7 1453 aa14.01□□□□□ -0.17
RPA1-201ENST00000254719 CCER1Q8TC90 406 aaPredicted RBP13.98□□□□□ -0.17
RPA1-201ENST00000254719 RANGAP1P46060 587 aaPredicted RBP13.98□□□□□ -0.17
RPA1-201ENST00000254719 ARHGEF11O15085 1522 aa13.96□□□□□ -0.17
RPA1-201ENST00000254719 DENND4BO75064 1496 aaPredicted RBP13.95□□□□□ -0.18
RPA1-201ENST00000254719 PTPRKQ15262 1439 aa13.94□□□□□ -0.18
RPA1-201ENST00000254719 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
RPA1-201ENST00000254719 KDM5BQ9UGL1 1544 aa13.94□□□□□ -0.18
RPA1-201ENST00000254719 FHOD3Q2V2M9 1422 aa13.93□□□□□ -0.18
RPA1-201ENST00000254719 GRIN2BQ13224 1484 aa13.92□□□□□ -0.18
RPA1-201ENST00000254719 AQRO60306 1485 aaKnown RBP eCLIP13.91□□□□□ -0.185e-7■■■■□ 24.4
RPA1-201ENST00000254719 APLP2Q06481 763 aa13.91□□□□□ -0.18
RPA1-201ENST00000254719 EFCAB5A4FU69 1503 aa13.9□□□□□ -0.18
RPA1-201ENST00000254719 FYCO1Q9BQS8 1478 aa13.88□□□□□ -0.19
RPA1-201ENST00000254719 ADAMTS12P58397 1594 aa13.88□□□□□ -0.19
RPA1-201ENST00000254719 KDM6BO15054 1643 aa13.88□□□□□ -0.19
RPA1-201ENST00000254719 CCNB3Q8WWL7 1395 aa13.87□□□□□ -0.19
RPA1-201ENST00000254719 TDRD9Q8NDG6 1382 aaKnown RBP13.87□□□□□ -0.19
RPA1-201ENST00000254719 CASKIN1Q8WXD9 1431 aa13.87□□□□□ -0.19
RPA1-201ENST00000254719 NEUROD1Q13562 356 aa13.86□□□□□ -0.19
RPA1-201ENST00000254719 ZNF608Q9ULD9 1512 aaPredicted RBP13.85□□□□□ -0.19
RPA1-201ENST00000254719 GAPVD1Q14C86 1478 aa13.85□□□□□ -0.19
RPA1-201ENST00000254719 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
RPA1-201ENST00000254719 THOC2Q8NI27 1593 aaKnown RBP13.83□□□□□ -0.19
RPA1-201ENST00000254719 WDR62O43379 1518 aa13.83□□□□□ -0.2
RPA1-201ENST00000254719 RAB3GAP2Q9H2M9 1393 aa13.81□□□□□ -0.2
RPA1-201ENST00000254719 DIEXFQ68CQ4 756 aaKnown RBP13.8□□□□□ -0.2
RPA1-201ENST00000254719 UGGT2Q9NYU1 1516 aa13.78□□□□□ -0.2
RPA1-201ENST00000254719 DISP1Q96F81 1524 aa13.78□□□□□ -0.2
RPA1-201ENST00000254719 ZNF316A6NFI3 1004 aaPredicted RBP13.76□□□□□ -0.21
RPA1-201ENST00000254719 GTF3C3Q9Y5Q9 886 aa13.76□□□□□ -0.21
RPA1-201ENST00000254719 EIF4G3O43432 1585 aaKnown RBP13.76□□□□□ -0.21
RPA1-201ENST00000254719 MIER1Q8N108 512 aa13.75□□□□□ -0.21
RPA1-201ENST00000254719 PTPN23Q9H3S7 1636 aa13.74□□□□□ -0.21
RPA1-201ENST00000254719 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
RPA1-201ENST00000254719 YTHDC1Q96MU7 727 aaKnown RBP13.74□□□□□ -0.21
RPA1-201ENST00000254719 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.73□□□□□ -0.21
RPA1-201ENST00000254719 PDS5BQ9NTI5 1447 aa13.72□□□□□ -0.21
RPA1-201ENST00000254719 CEP170Q5SW79 1584 aa13.72□□□□□ -0.21
RPA1-201ENST00000254719 FHAD1B1AJZ9 1412 aa13.71□□□□□ -0.21
RPA1-201ENST00000254719 IQGAP2Q13576 1575 aa13.71□□□□□ -0.21
RPA1-201ENST00000254719 GCC2Q8IWJ2 1684 aa13.71□□□□□ -0.21
RPA1-201ENST00000254719 CLSPNQ9HAW4 1339 aa13.7□□□□□ -0.22
RPA1-201ENST00000254719 FGD6Q6ZV73 1430 aa13.7□□□□□ -0.22
RPA1-201ENST00000254719 MRC2Q9UBG0 1479 aa13.7□□□□□ -0.22
RPA1-201ENST00000254719 CDK13Q14004 1512 aaKnown RBP13.69□□□□□ -0.22
RPA1-201ENST00000254719 ACIN1Q9UKV3 1341 aaKnown RBP13.69□□□□□ -0.22
RPA1-201ENST00000254719 TCOF1Q13428 1488 aaKnown RBP13.69□□□□□ -0.22
RPA1-201ENST00000254719 NCOA2Q15596 1464 aa13.68□□□□□ -0.22
RPA1-201ENST00000254719 KIAA0556O60303 1618 aa13.68□□□□□ -0.22
RPA1-201ENST00000254719 SUPT6HQ7KZ85 1726 aaKnown RBP13.68□□□□□ -0.22
RPA1-201ENST00000254719 NAIPQ13075 1403 aa13.67□□□□□ -0.22
RPA1-201ENST00000254719 SETD5Q9C0A6 1442 aa13.67□□□□□ -0.22
RPA1-201ENST00000254719 EPRSP07814 1512 aaKnown RBP13.64□□□□□ -0.23
RPA1-201ENST00000254719 NUP153P49790 1475 aaKnown RBP13.63□□□□□ -0.23
RPA1-201ENST00000254719 HFM1A2PYH4 1435 aa13.63□□□□□ -0.23
RPA1-201ENST00000254719 EHBP1L1Q8N3D4 1523 aa13.62□□□□□ -0.23
RPA1-201ENST00000254719 FMN1Q68DA7 1419 aa13.62□□□□□ -0.23
RPA1-201ENST00000254719 SIN3AQ96ST3 1273 aa13.6□□□□□ -0.23
RPA1-201ENST00000254719 HECW1Q76N89 1606 aa13.6□□□□□ -0.23
RPA1-201ENST00000254719 KCNH8Q96L42 1107 aa13.6□□□□□ -0.23
RPA1-201ENST00000254719 MYOM3Q5VTT5 1437 aa13.59□□□□□ -0.23
RPA1-201ENST00000254719 KIF14Q15058 1648 aa13.59□□□□□ -0.23
RPA1-201ENST00000254719 ADCY10Q96PN6 1610 aa13.58□□□□□ -0.24
RPA1-201ENST00000254719 GRIN2AQ12879 1464 aa13.57□□□□□ -0.24
RPA1-201ENST00000254719 CROCC2H7BZ55 1655 aa13.57□□□□□ -0.24
RPA1-201ENST00000254719 IFT140Q96RY7 1462 aa13.56□□□□□ -0.24
RPA1-201ENST00000254719 RAPGEF6Q8TEU7 1601 aa13.56□□□□□ -0.24
RPA1-201ENST00000254719 CENPBP07199 599 aaPredicted RBP13.55□□□□□ -0.24
RPA1-201ENST00000254719 CCDC18Q5T9S5 1454 aa13.54□□□□□ -0.24
RPA1-201ENST00000254719 CDC42BPAQ5VT25 1732 aa13.54□□□□□ -0.24
RPA1-201ENST00000254719 DNMT1P26358 1616 aaKnown RBP13.54□□□□□ -0.24
RPA1-201ENST00000254719 KIAA0586Q9BVV6 1533 aa13.52□□□□□ -0.24
RPA1-201ENST00000254719 ITGAEP38570 1179 aa13.52□□□□□ -0.25
RPA1-201ENST00000254719 NUP160Q12769 1436 aa13.5□□□□□ -0.25
RPA1-201ENST00000254719 ABCA8O94911 1581 aa13.5□□□□□ -0.25
RPA1-201ENST00000254719 UACAQ9BZF9 1416 aa13.5□□□□□ -0.25
RPA1-201ENST00000254719 PPP1R15AO75807 674 aaPredicted RBP13.49□□□□□ -0.25
RPA1-201ENST00000254719 PLB1Q6P1J6 1458 aa13.48□□□□□ -0.25
RPA1-201ENST00000254719 AKNAQ7Z591 1439 aa13.46□□□□□ -0.25
RPA1-201ENST00000254719 ABCC5O15440 1437 aa13.45□□□□□ -0.26
RPA1-201ENST00000254719 POLR1AO95602 1720 aaPredicted RBP13.45□□□□□ -0.26
RPA1-201ENST00000254719 CDC42BPBQ9Y5S2 1711 aa13.45□□□□□ -0.26
RPA1-201ENST00000254719 SHROOM2Q13796 1616 aa13.44□□□□□ -0.26
RPA1-201ENST00000254719 ZNF644Q9H582 1327 aaPredicted RBP13.43□□□□□ -0.26
RPA1-201ENST00000254719 ABCC10Q5T3U5 1492 aa13.43□□□□□ -0.26
RPA1-201ENST00000254719 ERCC6L2Q5T890 1561 aa13.43□□□□□ -0.26
RPA1-201ENST00000254719 MAGI1Q96QZ7 1491 aaPredicted RBP13.43□□□□□ -0.26
RPA1-201ENST00000254719 TEX14Q8IWB6 1497 aa13.43□□□□□ -0.26
RPA1-201ENST00000254719 CHD1O14646 1710 aa13.43□□□□□ -0.26
RPA1-201ENST00000254719 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
RPA1-201ENST00000254719 PZPP20742 1482 aa13.42□□□□□ -0.26
RPA1-201ENST00000254719 ADGBQ8N7X0 1667 aa13.42□□□□□ -0.26
RPA1-201ENST00000254719 PRG4Q92954 1404 aaPredicted RBP13.41□□□□□ -0.26
RPA1-201ENST00000254719 MIA2Q96PC5 1412 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 246.7 ms