RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 JPH4Q96JJ6 628 aa39.1■■■■□ 3.85
LSM4-201ENST00000252816 PRG4Q92954 1404 aaPredicted RBP39.05■■■■□ 3.84
LSM4-201ENST00000252816 KIAA0586Q9BVV6 1533 aa39.03■■■■□ 3.84
LSM4-201ENST00000252816 RAPGEF2Q9Y4G8 1499 aa38.91■■■■□ 3.82
LSM4-201ENST00000252816 IQGAP2Q13576 1575 aa38.75■■■■□ 3.79
LSM4-201ENST00000252816 TRHP20396 242 aaPredicted RBP38.74■■■■□ 3.79
LSM4-201ENST00000252816 PRXQ9BXM0 1461 aa38.73■■■■□ 3.79
LSM4-201ENST00000252816 CHIC1Q5VXU3 224 aa38.61■■■■□ 3.77
LSM4-201ENST00000252816 CSRNP3Q8WYN3 585 aa38.61■■■■□ 3.77
LSM4-201ENST00000252816 CARMIL2Q6F5E8 1435 aa38.59■■■■□ 3.77
LSM4-201ENST00000252816 DISP1Q96F81 1524 aa38.55■■■■□ 3.76
LSM4-201ENST00000252816 UGGT2Q9NYU1 1516 aa38.55■■■■□ 3.76
LSM4-201ENST00000252816 EEA1Q15075 1411 aa38.55■■■■□ 3.76
LSM4-201ENST00000252816 PTPRGP23470 1445 aa38.53■■■■□ 3.76
LSM4-201ENST00000252816 TNIKQ9UKE5 1360 aa38.52■■■■□ 3.76
LSM4-201ENST00000252816 CTTNBP2Q8WZ74 1663 aa38.5■■■■□ 3.75
LSM4-201ENST00000252816 ADCY10Q96PN6 1610 aa38.49■■■■□ 3.75
LSM4-201ENST00000252816 TTBK1Q5TCY1 1321 aaPredicted RBP38.48■■■■□ 3.75
LSM4-201ENST00000252816 FAM9AQ8IZU1 332 aaPredicted RBP38.45■■■■□ 3.75
LSM4-201ENST00000252816 KIAA0556O60303 1618 aa38.39■■■■□ 3.74
LSM4-201ENST00000252816 NPM1P06748 294 aaKnown RBP eCLIP38.37■■■■□ 3.73
LSM4-201ENST00000252816 MAPKBP1O60336 1514 aa38.28■■■■□ 3.72
LSM4-201ENST00000252816 GOLGA3Q08378 1498 aa38.27■■■■□ 3.72
LSM4-201ENST00000252816 UACAQ9BZF9 1416 aa38.26■■■■□ 3.72
LSM4-201ENST00000252816 UHRF1BP1LA0JNW5 1464 aa38.23■■■■□ 3.71
LSM4-201ENST00000252816 ABCC2Q92887 1545 aa38.22■■■■□ 3.71
LSM4-201ENST00000252816 KIF21BO75037 1637 aa38.19■■■■□ 3.7
LSM4-201ENST00000252816 KIF13AQ9H1H9 1805 aa38.17■■■■□ 3.7
LSM4-201ENST00000252816 ABCC10Q5T3U5 1492 aa38.16■■■■□ 3.7
LSM4-201ENST00000252816 FAM69CQ0P6D2 419 aa38.1■■■■□ 3.69
LSM4-201ENST00000252816 PLB1Q6P1J6 1458 aa38.09■■■■□ 3.69
LSM4-201ENST00000252816 P3H3Q8IVL6 736 aa38.08■■■■□ 3.69
LSM4-201ENST00000252816 DIP2BQ9P265 1576 aa38.08■■■■□ 3.69
LSM4-201ENST00000252816 KDM5BQ9UGL1 1544 aa38.07■■■■□ 3.68
LSM4-201ENST00000252816 SAMD9Q5K651 1589 aa38.04■■■■□ 3.68
LSM4-201ENST00000252816 ASXL2Q76L83 1435 aa38.03■■■■□ 3.68
LSM4-201ENST00000252816 ABCA8O94911 1581 aa38.02■■■■□ 3.68
LSM4-201ENST00000252816 EHMT2Q96KQ7 1210 aa38■■■■□ 3.67
LSM4-201ENST00000252816 RANGAP1P46060 587 aaPredicted RBP37.99■■■■□ 3.67
LSM4-201ENST00000252816 ZCCHC11Q5TAX3 1644 aaKnown RBP37.97■■■■□ 3.67
LSM4-201ENST00000252816 UBTFP17480 764 aaKnown RBP37.9■■■■□ 3.66
LSM4-201ENST00000252816 FHOD3Q2V2M9 1422 aa37.85■■■■□ 3.65
LSM4-201ENST00000252816 GLI2P10070 1586 aa37.8■■■■□ 3.64
LSM4-201ENST00000252816 EPRSP07814 1512 aaKnown RBP37.8■■■■□ 3.64
LSM4-201ENST00000252816 EFCAB5A4FU69 1503 aa37.79■■■■□ 3.64
LSM4-201ENST00000252816 WDR7Q9Y4E6 1490 aa37.77■■■■□ 3.64
LSM4-201ENST00000252816 TSPOAP1O95153 1857 aa37.75■■■■□ 3.63
LSM4-201ENST00000252816 ARID3CA6NKF2 412 aa37.75■■■■□ 3.63
LSM4-201ENST00000252816 ATP10BO94823 1461 aa37.73■■■■□ 3.63
LSM4-201ENST00000252816 RAPGEF6Q8TEU7 1601 aa37.72■■■■□ 3.63
LSM4-201ENST00000252816 NUP153P49790 1475 aaKnown RBP37.64■■■■□ 3.62
LSM4-201ENST00000252816 PPRC1Q5VV67 1664 aaKnown RBP37.63■■■■□ 3.62
LSM4-201ENST00000252816 MAP3K4Q9Y6R4 1608 aa37.62■■■■□ 3.61
LSM4-201ENST00000252816 ARHGAP35Q9NRY4 1499 aa37.62■■■■□ 3.61
LSM4-201ENST00000252816 KCNH8Q96L42 1107 aa37.61■■■■□ 3.61
LSM4-201ENST00000252816 KDM6BO15054 1643 aa37.53■■■■□ 3.6
LSM4-201ENST00000252816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.5■■■■□ 3.59
LSM4-201ENST00000252816 HNRNPUL2Q1KMD3 747 aaKnown RBP37.5■■■■□ 3.59
LSM4-201ENST00000252816 CD109Q6YHK3 1445 aa37.46■■■■□ 3.59
LSM4-201ENST00000252816 FMN1Q68DA7 1419 aa37.45■■■■□ 3.59
LSM4-201ENST00000252816 TEX14Q8IWB6 1497 aa37.45■■■■□ 3.59
LSM4-201ENST00000252816 CFAP43Q8NDM7 1665 aa37.44■■■■□ 3.58
LSM4-201ENST00000252816 MAGI3Q5TCQ9 1506 aa37.39■■■■□ 3.58
LSM4-201ENST00000252816 COL17A1Q9UMD9 1497 aaPredicted RBP37.37■■■■□ 3.57
LSM4-201ENST00000252816 CDK13Q14004 1512 aaKnown RBP37.35■■■■□ 3.57
LSM4-201ENST00000252816 PLEKHD1A6NEE1 506 aa37.33■■■■□ 3.57
LSM4-201ENST00000252816 ABCA9Q8IUA7 1624 aa37.32■■■■□ 3.57
LSM4-201ENST00000252816 ATP1B4Q9UN42 357 aaPredicted RBP37.31■■■■□ 3.56
LSM4-201ENST00000252816 HECW1Q76N89 1606 aa37.29■■■■□ 3.56
LSM4-201ENST00000252816 CLIP1P30622 1438 aa37.27■■■■□ 3.56
LSM4-201ENST00000252816 CASKIN1Q8WXD9 1431 aa37.16■■■■□ 3.54
LSM4-201ENST00000252816 PCF11O94913 1555 aaKnown RBP37.15■■■■□ 3.54
LSM4-201ENST00000252816 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.14■■■■□ 3.544e-7■■■□□ 15.9
LSM4-201ENST00000252816 LRRIQ1Q96JM4 1722 aa37.13■■■■□ 3.54
LSM4-201ENST00000252816 TTC37Q6PGP7 1564 aa37.08■■■■□ 3.53
LSM4-201ENST00000252816 CDK11AQ9UQ88 783 aaPredicted RBP37.08■■■■□ 3.53
LSM4-201ENST00000252816 ARAP3Q8WWN8 1544 aa37.08■■■■□ 3.53
LSM4-201ENST00000252816 LOC105371045A0A1W2PR82 267 aa37.07■■■■□ 3.52
LSM4-201ENST00000252816 NEO1Q92859 1461 aa37.06■■■■□ 3.52
LSM4-201ENST00000252816 PHLDB1Q86UU1 1377 aa37.05■■■■□ 3.52
LSM4-201ENST00000252816 CEP162Q5TB80 1403 aa37.05■■■■□ 3.52
LSM4-201ENST00000252816 FYCO1Q9BQS8 1478 aa37.03■■■■□ 3.52
LSM4-201ENST00000252816 TROQ12816 1431 aaPredicted RBP37.02■■■■□ 3.52
LSM4-201ENST00000252816 CCDC18Q5T9S5 1454 aa37.01■■■■□ 3.51
LSM4-201ENST00000252816 AEBP2Q6ZN18 517 aaPredicted RBP36.97■■■■□ 3.51
LSM4-201ENST00000252816 KIF14Q15058 1648 aa36.96■■■■□ 3.51
LSM4-201ENST00000252816 FANCAO15360 1455 aa36.94■■■■□ 3.5
LSM4-201ENST00000252816 RAPGEF3O95398 923 aa36.92■■■■□ 3.5
LSM4-201ENST00000252816 PLCH2O75038 1416 aa36.91■■■■□ 3.5
LSM4-201ENST00000252816 AKNAQ7Z591 1439 aa36.91■■■■□ 3.5
LSM4-201ENST00000252816 KDM4FA0A1W2PPD8 638 aa36.89■■■■□ 3.5
LSM4-201ENST00000252816 CFAP74Q9C0B2 1584 aa36.87■■■■□ 3.49
LSM4-201ENST00000252816 FRMPD1Q5SYB0 1578 aa36.84■■■■□ 3.49
LSM4-201ENST00000252816 MYO5CQ9NQX4 1742 aa36.81■■■■□ 3.48
LSM4-201ENST00000252816 DENND4BO75064 1496 aaPredicted RBP36.81■■■■□ 3.48
LSM4-201ENST00000252816 EFCAB2Q5VUJ9 269 aa36.76■■■■□ 3.48
LSM4-201ENST00000252816 ADGRL1O94910 1474 aa36.75■■■■□ 3.47
LSM4-201ENST00000252816 RICTORQ6R327 1708 aa36.73■■■■□ 3.47
LSM4-201ENST00000252816 ARHGAP5Q13017 1502 aa36.7■■■■□ 3.47
LSM4-201ENST00000252816 SCAPERQ9BY12 1400 aa36.7■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms