RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 GRIN2AQ12879 1464 aa18.56■□□□□ 0.56
VPS50-201ENST00000251739 NUP160Q12769 1436 aa18.53■□□□□ 0.56
VPS50-201ENST00000251739 CEP170Q5SW79 1584 aa18.52■□□□□ 0.56
VPS50-201ENST00000251739 MAPK8IP2Q13387 824 aaPredicted RBP18.52■□□□□ 0.56
VPS50-201ENST00000251739 ERICH3Q5RHP9 1530 aa18.52■□□□□ 0.56
VPS50-201ENST00000251739 SHROOM2Q13796 1616 aa18.5■□□□□ 0.55
VPS50-201ENST00000251739 ERCC6L2Q5T890 1561 aa18.48■□□□□ 0.55
VPS50-201ENST00000251739 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
VPS50-201ENST00000251739 KCNA4P22459 653 aa18.47■□□□□ 0.55
VPS50-201ENST00000251739 TRHP20396 242 aaPredicted RBP18.42■□□□□ 0.54
VPS50-201ENST00000251739 NCBP3Q53F19 620 aaKnown RBP18.39■□□□□ 0.53
VPS50-201ENST00000251739 CNKSR2Q8WXI2 1034 aa18.38■□□□□ 0.53
VPS50-201ENST00000251739 RUSC2Q8N2Y8 1516 aa18.36■□□□□ 0.53
VPS50-201ENST00000251739 DMRT2Q9Y5R5 561 aa18.3■□□□□ 0.52
VPS50-201ENST00000251739 CUL7Q14999 1698 aa18.27■□□□□ 0.52
VPS50-201ENST00000251739 PRG4Q92954 1404 aaPredicted RBP18.26■□□□□ 0.51
VPS50-201ENST00000251739 KIF13AQ9H1H9 1805 aa18.24■□□□□ 0.51
VPS50-201ENST00000251739 IGF1RP08069 1367 aa18.21■□□□□ 0.51
VPS50-201ENST00000251739 KIF27Q86VH2 1401 aa18.21■□□□□ 0.51
VPS50-201ENST00000251739 JPH4Q96JJ6 628 aa18.2■□□□□ 0.5
VPS50-201ENST00000251739 KIAA0586Q9BVV6 1533 aa18.18■□□□□ 0.5
VPS50-201ENST00000251739 ADCY10Q96PN6 1610 aa18.15■□□□□ 0.5
VPS50-201ENST00000251739 NPM3O75607 178 aaKnown RBP18.14■□□□□ 0.49
VPS50-201ENST00000251739 MAPKBP1O60336 1514 aa18.13■□□□□ 0.49
VPS50-201ENST00000251739 DIP2BQ9P265 1576 aa18.08■□□□□ 0.48
VPS50-201ENST00000251739 ABCC10Q5T3U5 1492 aa18.07■□□□□ 0.48
VPS50-201ENST00000251739 CARMIL1Q5VZK9 1371 aa18.06■□□□□ 0.48
VPS50-201ENST00000251739 IQGAP2Q13576 1575 aa18.04■□□□□ 0.48
VPS50-201ENST00000251739 RNF216Q9NWF9 866 aaPredicted RBP18.01■□□□□ 0.47
VPS50-201ENST00000251739 DISP1Q96F81 1524 aa17.96■□□□□ 0.47
VPS50-201ENST00000251739 HOXD11P31277 338 aaPredicted RBP17.95■□□□□ 0.46
VPS50-201ENST00000251739 PTPRGP23470 1445 aa17.95■□□□□ 0.46
VPS50-201ENST00000251739 CARMIL2Q6F5E8 1435 aa17.95■□□□□ 0.46
VPS50-201ENST00000251739 TNIKQ9UKE5 1360 aa17.94■□□□□ 0.46
VPS50-201ENST00000251739 ABCC2Q92887 1545 aa17.94■□□□□ 0.46
VPS50-201ENST00000251739 UGGT2Q9NYU1 1516 aa17.93■□□□□ 0.46
VPS50-201ENST00000251739 NPM1P06748 294 aaKnown RBP eCLIP17.93■□□□□ 0.46
VPS50-201ENST00000251739 FAM69CQ0P6D2 419 aa17.93■□□□□ 0.46
VPS50-201ENST00000251739 UHRF1BP1LA0JNW5 1464 aa17.93■□□□□ 0.46
VPS50-201ENST00000251739 RAPGEF2Q9Y4G8 1499 aa17.93■□□□□ 0.46
VPS50-201ENST00000251739 TSPOAP1O95153 1857 aa17.9■□□□□ 0.46
VPS50-201ENST00000251739 KIAA0556O60303 1618 aa17.9■□□□□ 0.46
VPS50-201ENST00000251739 CTTNBP2Q8WZ74 1663 aa17.89■□□□□ 0.45
VPS50-201ENST00000251739 KDM6BO15054 1643 aa17.87■□□□□ 0.45
VPS50-201ENST00000251739 PPRC1Q5VV67 1664 aaKnown RBP17.87■□□□□ 0.45
VPS50-201ENST00000251739 GLI2P10070 1586 aa17.87■□□□□ 0.45
VPS50-201ENST00000251739 UACAQ9BZF9 1416 aa17.85■□□□□ 0.45
VPS50-201ENST00000251739 KDM5BQ9UGL1 1544 aa17.84■□□□□ 0.45
VPS50-201ENST00000251739 ASXL2Q76L83 1435 aa17.84■□□□□ 0.45
VPS50-201ENST00000251739 PLB1Q6P1J6 1458 aa17.83■□□□□ 0.45
VPS50-201ENST00000251739 ZCCHC11Q5TAX3 1644 aaKnown RBP17.82■□□□□ 0.44
VPS50-201ENST00000251739 POTEDQ86YR6 584 aa17.8■□□□□ 0.44
VPS50-201ENST00000251739 PRXQ9BXM0 1461 aa17.8■□□□□ 0.44
VPS50-201ENST00000251739 MAP3K4Q9Y6R4 1608 aa17.79■□□□□ 0.44
VPS50-201ENST00000251739 TTBK1Q5TCY1 1321 aaPredicted RBP17.76■□□□□ 0.43
VPS50-201ENST00000251739 EPRSP07814 1512 aaKnown RBP17.76■□□□□ 0.43
VPS50-201ENST00000251739 GOLGA3Q08378 1498 aa17.73■□□□□ 0.43
VPS50-201ENST00000251739 ABCA8O94911 1581 aa17.73■□□□□ 0.43
VPS50-201ENST00000251739 WDR7Q9Y4E6 1490 aa17.69■□□□□ 0.42
VPS50-201ENST00000251739 COL17A1Q9UMD9 1497 aaPredicted RBP17.67■□□□□ 0.42
VPS50-201ENST00000251739 CFAP43Q8NDM7 1665 aa17.65■□□□□ 0.42
VPS50-201ENST00000251739 TEX14Q8IWB6 1497 aa17.65■□□□□ 0.42
VPS50-201ENST00000251739 SAMD9Q5K651 1589 aa17.64■□□□□ 0.41
VPS50-201ENST00000251739 KDM4FA0A1W2PPD8 638 aa17.63■□□□□ 0.41
VPS50-201ENST00000251739 MAGI3Q5TCQ9 1506 aa17.59■□□□□ 0.41
VPS50-201ENST00000251739 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
VPS50-201ENST00000251739 EEA1Q15075 1411 aa17.55■□□□□ 0.4
VPS50-201ENST00000251739 ADGRL1O94910 1474 aa17.54■□□□□ 0.4
VPS50-201ENST00000251739 CSRNP3Q8WYN3 585 aa17.53■□□□□ 0.4
VPS50-201ENST00000251739 CD109Q6YHK3 1445 aa17.53■□□□□ 0.4
VPS50-201ENST00000251739 ATP10BO94823 1461 aa17.52■□□□□ 0.4
VPS50-201ENST00000251739 RAPGEF6Q8TEU7 1601 aa17.52■□□□□ 0.4
VPS50-201ENST00000251739 ABCA9Q8IUA7 1624 aa17.5■□□□□ 0.39
VPS50-201ENST00000251739 KIF21BO75037 1637 aa17.47■□□□□ 0.39
VPS50-201ENST00000251739 ARAP3Q8WWN8 1544 aa17.46■□□□□ 0.39
VPS50-201ENST00000251739 NUP153P49790 1475 aaKnown RBP17.45■□□□□ 0.38
VPS50-201ENST00000251739 KCNH8Q96L42 1107 aa17.44■□□□□ 0.38
VPS50-201ENST00000251739 P3H3Q8IVL6 736 aa17.43■□□□□ 0.38
VPS50-201ENST00000251739 EFCAB5A4FU69 1503 aa17.42■□□□□ 0.38
VPS50-201ENST00000251739 DCAF8L1A6NGE4 600 aa17.41■□□□□ 0.38
VPS50-201ENST00000251739 FHOD3Q2V2M9 1422 aa17.4■□□□□ 0.38
VPS50-201ENST00000251739 NEO1Q92859 1461 aa17.37■□□□□ 0.37
VPS50-201ENST00000251739 FRMPD1Q5SYB0 1578 aa17.37■□□□□ 0.37
VPS50-201ENST00000251739 ARID3CA6NKF2 412 aa17.37■□□□□ 0.37
VPS50-201ENST00000251739 PHLDB1Q86UU1 1377 aa17.37■□□□□ 0.37
VPS50-201ENST00000251739 FAM9AQ8IZU1 332 aaPredicted RBP17.36■□□□□ 0.37
VPS50-201ENST00000251739 HECW2Q9P2P5 1572 aa17.32■□□□□ 0.36
VPS50-201ENST00000251739 RICTORQ6R327 1708 aa17.3■□□□□ 0.36
VPS50-201ENST00000251739 TTC37Q6PGP7 1564 aa17.3■□□□□ 0.36
VPS50-201ENST00000251739 ADAMTSL3P82987 1691 aa17.29■□□□□ 0.36
VPS50-201ENST00000251739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.29■□□□□ 0.36
VPS50-201ENST00000251739 CFAP74Q9C0B2 1584 aa17.28■□□□□ 0.36
VPS50-201ENST00000251739 ARHGEF40Q8TER5 1519 aa17.27■□□□□ 0.36
VPS50-201ENST00000251739 CDK13Q14004 1512 aaKnown RBP17.26■□□□□ 0.35
VPS50-201ENST00000251739 BCORL1Q5H9F3 1711 aa17.25■□□□□ 0.35
VPS50-201ENST00000251739 RANGAP1P46060 587 aaPredicted RBP17.24■□□□□ 0.35
VPS50-201ENST00000251739 ARHGAP35Q9NRY4 1499 aa17.24■□□□□ 0.35
VPS50-201ENST00000251739 ZMYM4Q5VZL5 1548 aa17.23■□□□□ 0.35
VPS50-201ENST00000251739 HECW1Q76N89 1606 aa17.23■□□□□ 0.35
VPS50-201ENST00000251739 RAPGEF3O95398 923 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms